Rroxscaffold_1G00015410

Belongs to the GRAS family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000175
Physical Location & Seq
Reverse (-)
19177732 .. 19179753
2022 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00015410.1

Sequence Viewer

Length: 2022 bp
ATGGATGAATTTCCAAGTTCCATGAATAATTTCATGTTTAACCAGAACTCAATGCCAACTTCAGGTCAGAGTATCCTTGTTGCTGAATCTGATCAACACAATCATGAATTCAGTGATCCCAGTTTCTTTCCATCCAATCCAAACCCTCCTTCTTGTAATGATCCATCTTCATCTTTGGGTTTGAGCTCAGAGGGGGGGTATTACTCTCCCTCTATTGCTACTCTCCAATACATAAGTCAGATGCTTATGGAAGAAGACTTGGAGAACAGACCCTGCATGCTTCAGGACTGTTTGGCCCTCCAAGCCGCTGAGAAATCCTTACATGATGTCCTAGTTCAGCAATATCCTTCTTCGACTAATCACCTTCTCACTTCTTCCACTCATCAAAATGTTGAGATATCTGATGATTTCATTAACCACAGCAGTAATAGCTCCACTGCTGCTAGGAACTGGGATGATGGCTCAGGTTGGATTTCTTTTCAAAATGTTCTAGAATCCTCTCCTGTGGAGAATGATACCCTTTTGGTTCCAAATCCTTTTTCCTCAAATGGAAAGGGTGAAATCATAAATCTAGAAAGGGACCCATCATTTCTCATACAGCCAAGGGAGCTGGCTGAGGATGGGAATGACTCAACAAACGGTCCAAGGAGCAAGAAAGATCGTCAGTGGGACGATGGTGATTATCAAGAAGAAGGGAGGAGCAACAAGCAGACAGCATTTTACGCAGCTGAGTCTGAGCCACCAGAGATGTTAGATAAGGTACTGCTCTATCAGTATCAAAACTCATGTTCTTCTCTTCAGGAATCTGATCAGCCTAAAAAGGGAAGTGGACTTGGAGGATCCAAAGGCAAAAGAACAGGAAAGAAAAAAATGGATGACAACAGAGCAGTGGTGGATTTTCAGACACTTCTAACTCAATGTGCAAAAGCTGTTGCAAGCTATGACATAAGGACTGCAAAGGAACAACTCAAGCTGATAAGGCAGCACTCATCTCCCCATGGTGATGGAACCCAACGATTAGCTCATTACTTGGCCAATGGCCTGGAAGAACGCTTGATCGCTGCGGTTCCGTTGTACAATCCCGTTTCCCTTTTCAGTTATAAGATTTCAGCTGCTGATGTCTTAAAAGCTTACCAGACTTATATCAAAGCATGCCCTTTCAAGCTGATGTCAAATATCTACGCTAACAAAACTATTTTCAAGCTAGCAGAGAAAGTAACGAGGCTTCACATAATCGATTTTGGTATTCTCTATGGCTACCAATGGCCTTGCCTTATCCAGATGCTTGCAGAAAGACCCTCCGGACCTCCCATGCTTCACATTACTGGTATTGAATTTCCCCAATCAGGATTTCGACCTTCAGGGAGGCTTGAAGAGACGGGGAACCGCCTAGCGAAATACTGCAAGAGATTCAATGTCCCGTTTGAGTACAATTTTATAGCACAGAGTTGGGAAACCATTAAATATGGAGATATCAAACTTGACAGAGACGAGTTGACTGTAGTGAACTGCTTGTACAGGTTAAAGAACTTACCTGATGAAACAGTAATCAACAGTCCAAGGGATACAGTTTTGAAGCTTATCAGAAGAATCAACCCAGATATCTTCATTCATGGAGTGGTTAATGGAGCCTACAATGCACCCTTCTTCGACATACGGTTCCGGGAGGCGCTCTACTATTTCTCTTCCTTGTTTGATATGTTTGAGGAGACTTTGCCCAGAGAAGATCAACAGAGGTTGCTCTATGAACAGGCCACATTTGGTAGAGATATTATCAATGTGATAGCATGTGAGGGTTCCAGGAGGCTTGAAAGGCCTGAAACATACAAGCAGTGGCATACAAGAAACACTAGAGCTGGGTTCGAGCAGTTACCATTACAGCAGGAGATCCTGGAGGAAGTCAAGTGTATGGTAAGGTTAGATTACCATCAGGACTTTGTTGTCGATGAAGATGGCAAGTGGCTCTTGCAGGGATGGAAAGGCCGAATAATACATGCTATTTCTTGCTGGAAATCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GRAS

Protein Analysis

673

Amino Acids

76.63

Weight (kDa)

5.42

Isoelectric Point (pI)

53.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRAS PF03514 301 - 671 5.8e-116 GRAS domain family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000175)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G46600 AT3G46600 AT3G46600 AT5G59450
fragaria_vesca FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36691 FvH4_3g36700 FvH4_3g36711 FvH4_3g36711 FvH4_3g36720 FvH4_3g36730 FvH4_3g36760
malus_domestica MD03G1088900.v1.1 MD03G1089100.v1.1 MD03G1089200.v1.1 MD03G1089300.v1.1 MD11G1097900.v1.1 MD11G1098000.v1.1 MD11G1098100.v1.1 MD11G1098400.v1.1 MD11G1098900.v1.1
prunus_persica Prupe.6G073300_v2.0.a1 Prupe.6G073400_v2.0.a1 Prupe.6G073400_v2.0.a1 Prupe.6G073500_v2.0.a1 Prupe.6G073600_v2.0.a1 Prupe.6G073700_v2.0.a1 Prupe.6G073800_v2.0.a1 Prupe.I004400_v2.0.a1 Prupe.I004500_v2.0.a1
pyrus_communis pycom03g07050 pycom03g07060 pycom03g07070 pycom03g07110 pycom04g11870 pycom11g08270 pycom11g08280
rosa_chinensis RchiOBHm_Chr5g0065591 RchiOBHm_Chr5g0065601 RchiOBHm_Chr5g0065621 RchiOBHm_Chr5g0065631 RchiOBHm_Chr5g0065641 RchiOBHm_Chr5g0065651 RchiOBHm_Chr5g0065671 RchiOBHm_Chr5g0065721 RchiOBHm_Chr5g0065731 RchiOBHm_Chr5g0065751 RchiOBHm_Chr5g0065791 RchiOBHm_Chr5g0065811
rosa_laevigata RLG00000035800 RLG00000035801 RLG00000035803 RLG00000035804 RLG00000035805 RLG00000035806 RLG00000035807 RLG00000035808 RLG00000035809 RLG00000035810 RLG00000035813 RLG00000035814 RLG00000035816
rosa_multiflora Rmu_co8233911.1_g000001 Rmu_co8258053.1_g000001 Rmu_co8279117.1_g000001 Rmu_sc0000235.1_g000004 Rmu_sc0000235.1_g000024 Rmu_sc0000235.1_g000060 Rmu_sc0000235.1_g000074 Rmu_sc0001010.1_g000001 Rmu_sc0001010.1_g000015 Rmu_sc0001010.1_g000030 Rmu_sc0001010.1_g000037 Rmu_sc0001010.1_g000043 Rmu_sc0001010.1_g000063 Rmu_sc0001010.1_g000066 Rmu_sc0003636.1_g000008 Rmu_sc0003636.1_g000011 Rmu_sc0003636.1_g000012 Rmu_sc0003636.1_g000015 Rmu_sc0005971.1_g000017 Rmu_sc0008231.1_g000001 Rmu_sc0032155.1_g000001
rosa_roxburghii Rroxscaffold_1G00015360 Rroxscaffold_1G00015390 Rroxscaffold_1G00015410 Rroxscaffold_1G00015430 Rroxscaffold_1G00015490 Rroxscaffold_1G00015520 Rroxscaffold_1G00015530 Rroxscaffold_1G00015550 Rroxscaffold_1G00015560 Rroxscaffold_1G00015580 Rroxscaffold_1G00015600 Rroxscaffold_1G00015610 Rroxscaffold_1G00015620 Rroxscaffold_1G00015630
rosa_rugosa Rorug05G0372800 Rorug05G0372800 Rorug05G0372800 Rorug05G0372800 Rorug05G0373100 Rorug05G0373100 Rorug05G0373200 Rorug05G0373300 Rorug05G0373400 Rorug05G0373500 Rorug05G0373600 Rorug05G0373700 Rorug05G0378700
rosa_samantha Rh5AG430900 Rh5AG431000 Rh5AG431100 Rh5AG431200 Rh5AG431700 Rh5AG431800 Rh5AG431900 Rh5AG432200 Rh5AG432500 Rh5BG445200 Rh5BG446000 Rh5BG447100 Rh5BG447200 Rh5BG447400 Rh5BG447800 Rh5BG447900 Rh5BG448000 Rh5BG448100 Rh5BG448300 Rh5BG448400 Rh5BG448500 Rh5BG448600 Rh5CG467400 Rh5CG468000 Rh5CG469000 Rh5CG469100 Rh5CG469400 Rh5CG469700 Rh5CG469900 Rh5CG470100 Rh5CG470200 Rh5CG470600 Rh5CG470700 Rh5CG470800 Rh5DG459500 Rh5DG459700 Rh5DG459800 Rh5DG460000 Rh5DG460900 Rh5DG461300 Rh5DG461500 Rh5DG461900 Rh5DG462000 Rh5DG462100
rosa_wichuraiana Rw5G040420 Rw5G040430 Rw5G040440 Rw5G040470 Rw5G040480 Rw5G040500 Rw5G040510 Rw5G040530 Rw5G040550 Rw5G040560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1101
AasI GACNNNNNNGTC 1 cut(s) 1940
AccIII TCCGGA 1 cut(s) 1301
AciI CCGC 3 cut(s) 306, 1064, 1387
AclWI GGATC 5 cut(s) 110, 155, 834, 847, 1882
AcoI YGGCCR 1 cut(s) 1032
AcsI RAATTY 3 cut(s) 8, 107, 1334
AcuI CTGAAG 4 cut(s) 45, 266, 782, 1344
AfaI GTAC 4 cut(s) 762, 1076, 1430, 1517
AfiI CCNNNNNNNGG 3 cut(s) 62, 821, 1346
AgsI TTSAA 8 cut(s) 482, 1162, 1201, 1334, 1373, 1414, 1576, 1811
AjnI CCWGG 3 cut(s) 1041, 1799, 1890
AjuI GAANNNNNNNTTGG 6 cut(s) 133, 165, 523, 555, 1335, 1367
Alw21I GWGCWC 1 cut(s) 188
Alw26I GTCTC 3 cut(s) 1370, 1482, 1703
AlwI GGATC 5 cut(s) 110, 155, 834, 847, 1882
AlwNI CAGNNNCTG 2 cut(s) 273, 1115
Aor13HI TCCGGA 1 cut(s) 1301
AoxI GGCC 7 cut(s) 294, 1032, 1039, 1265, 1752, 1814, 1981
ApeKI GCWGC 5 cut(s) 440, 725, 982, 1061, 1112
ApoI RAATTY 3 cut(s) 8, 107, 1334
Asp700I GAANNNNTTC 1 cut(s) 29
AspLEI GCGC 1 cut(s) 1672
AspS9I GGNCC 4 cut(s) 295, 580, 641, 1304
AsuC2I CCSGG 1 cut(s) 1664
AsuHPI GGTGA 4 cut(s) 353, 569, 689, 1013
AsuNHI GCTAGC 1 cut(s) 1204
AvaII GGWCC 3 cut(s) 580, 641, 1304
BalI TGGCCA 1 cut(s) 1034
BamHI GGATCC 1 cut(s) 839
BanII GRGCYC 1 cut(s) 188
BarI GAAGNNNNNNTAC 2 cut(s) 1209, 1241
BbsI GAAGAC 1 cut(s) 261
Bbv12I GWGCWC 1 cut(s) 188
BbvCI CCTCAGC 1 cut(s) 615
BbvI GCAGC 5 cut(s) 427, 737, 994, 1048, 1099
BciT130I CCWGG 3 cut(s) 1043, 1801, 1892
BciVI GTATCC 2 cut(s) 83, 1558
BclI TGATCA 2 cut(s) 91, 808
BcnI CCSGG 1 cut(s) 1664
BcoDI GTCTC 3 cut(s) 1370, 1482, 1703
BfaI CTAG 7 cut(s) 332, 444, 491, 572, 1205, 1391, 1851
BfmI CTRYAG 1 cut(s) 1500
BfoI RGCGCY 1 cut(s) 1673
BfuI GTATCC 2 cut(s) 83, 1558
BisI GCNGC 6 cut(s) 306, 441, 726, 983, 1062, 1113
BlsI GCNGC 6 cut(s) 307, 442, 727, 984, 1063, 1114
Bme1390I CCNGG 4 cut(s) 1043, 1664, 1801, 1892
Bme18I GGWCC 3 cut(s) 580, 641, 1304
BmgT120I GGNCC 4 cut(s) 295, 580, 641, 1304
BmrFI CCNGG 4 cut(s) 1043, 1664, 1801, 1892
BmrI ACTGGG 2 cut(s) 114, 460
BmsI GCATC 2 cut(s) 231, 1272
BmtI GCTAGC 1 cut(s) 1208
BmuI ACTGGG 2 cut(s) 114, 460
BpiI GAAGAC 1 cut(s) 261
BpmI CTGGAG 1 cut(s) 1913
Bpu10I CCTNAGC 2 cut(s) 463, 615
BpuEI CTTGAG 1 cut(s) 953
BpuMI CCSGG 1 cut(s) 1664
Bsa29I ATCGAT 1 cut(s) 1236
BsaBI GATNNNNATC 1 cut(s) 1926
BsaJI CCNNGG 4 cut(s) 602, 644, 997, 1559
BsaWI WCCGGW 1 cut(s) 1301
Bsc4I CCNNNNNNNGG 3 cut(s) 62, 821, 1346
Bse1I ACTGG 3 cut(s) 120, 455, 1330
Bse8I GATNNNNATC 1 cut(s) 1926
BseAI TCCGGA 1 cut(s) 1301
BseBI CCWGG 3 cut(s) 1043, 1801, 1892
BseCI ATCGAT 1 cut(s) 1236
BseDI CCNNGG 4 cut(s) 602, 644, 997, 1559
BseGI GGATG 6 cut(s) 10, 131, 460, 625, 880, 1979
BseJI GATNNNNATC 1 cut(s) 1926
BseLI CCNNNNNNNGG 3 cut(s) 62, 821, 1346
BseMII CTCAG 6 cut(s) 201, 300, 477, 606, 720, 726
BseNI ACTGG 3 cut(s) 120, 455, 1330
BseRI GAGGAG 2 cut(s) 712, 1721
BseXI GCAGC 5 cut(s) 427, 737, 994, 1048, 1099
BseYI CCCAGC 1 cut(s) 1856
BshFI GGCC 7 cut(s) 296, 1034, 1041, 1267, 1754, 1816, 1983
BshVI ATCGAT 1 cut(s) 1236
BsiHKAI GWGCWC 1 cut(s) 188
BsiSI CCGG 2 cut(s) 1302, 1663
BslFI GGGAC 3 cut(s) 593, 683, 1403
BslI CCNNNNNNNGG 3 cut(s) 62, 821, 1346
BsmAI GTCTC 3 cut(s) 1370, 1482, 1703
BsmBI CGTCTC 2 cut(s) 1370, 1482
BsmFI GGGAC 3 cut(s) 593, 683, 1403
BsnI GGCC 7 cut(s) 296, 1034, 1041, 1267, 1754, 1816, 1983
Bsp1286I GDGCHC 1 cut(s) 188
Bsp13I TCCGGA 1 cut(s) 1301
Bsp1407I TGTACA 2 cut(s) 1074, 1515
Bsp143I GATC 9 cut(s) 91, 115, 160, 658, 808, 839, 1056, 1726, 1887
Bsp19I CCATGG 1 cut(s) 997
BspACI CCGC 3 cut(s) 306, 1064, 1387
BspANI GGCC 7 cut(s) 296, 1034, 1041, 1267, 1754, 1816, 1983
BspCNI CTCAG 6 cut(s) 200, 301, 476, 607, 721, 727
BspDI ATCGAT 1 cut(s) 1236
BspEI TCCGGA 1 cut(s) 1301
BspHI TCATGA 1 cut(s) 103
BspOI GCTAGC 1 cut(s) 1208
BspPI GGATC 5 cut(s) 110, 155, 834, 847, 1882
BsrGI TGTACA 2 cut(s) 1074, 1515
BsrI ACTGG 3 cut(s) 120, 455, 1330
BssECI CCNNGG 4 cut(s) 602, 644, 997, 1559
BssMI GATC 9 cut(s) 91, 115, 160, 658, 808, 839, 1056, 1726, 1887
BssT1I CCWWGG 4 cut(s) 602, 644, 997, 1559
Bst2UI CCWGG 3 cut(s) 1043, 1801, 1892
Bst4CI ACNGT 7 cut(s) 290, 641, 1501, 1546, 1556, 1570, 1659
Bst6I CTCTTC 3 cut(s) 801, 1368, 1690
BstAUI TGTACA 2 cut(s) 1074, 1515
BstC8I GCNNGC 6 cut(s) 278, 612, 937, 1153, 1206, 1287
BstDEI CTNAG 6 cut(s) 187, 309, 463, 615, 729, 735
BstDSI CCRYGG 1 cut(s) 997
BstF5I GGATG 6 cut(s) 10, 131, 460, 625, 880, 1979
BstH2I RGCGCY 1 cut(s) 1673
BstHHI GCGC 1 cut(s) 1672
BstKTI GATC 9 cut(s) 94, 118, 163, 661, 811, 842, 1059, 1729, 1890
BstMAI GTCTC 3 cut(s) 1370, 1482, 1703
BstMBI GATC 9 cut(s) 91, 115, 160, 658, 808, 839, 1056, 1726, 1887
BstMWI GCNNNNNNNGC 7 cut(s) 302, 429, 607, 722, 979, 1637, 1813
BstNI CCWGG 3 cut(s) 1043, 1801, 1892
BstNSI RCATGY 4 cut(s) 280, 1155, 1791, 1997
BstSCI CCNGG 4 cut(s) 1041, 1662, 1799, 1890
BstSFI CTRYAG 1 cut(s) 1500
BstV1I GCAGC 5 cut(s) 427, 737, 994, 1048, 1099
BstV2I GAAGAC 1 cut(s) 261
BstX2I RGATCY 2 cut(s) 839, 1887
BstXI CCANNNNNNTGG 2 cut(s) 1004, 1042
BstYI RGATCY 2 cut(s) 839, 1887
Bsu15I ATCGAT 1 cut(s) 1236
BsuI GTATCC 2 cut(s) 83, 1558
BsuRI GGCC 7 cut(s) 296, 1034, 1041, 1267, 1754, 1816, 1983
BsuTUI ATCGAT 1 cut(s) 1236
BtgI CCRYGG 1 cut(s) 997
BtsCI GGATG 6 cut(s) 10, 131, 460, 625, 880, 1979
BtsI GCAGTG 3 cut(s) 435, 894, 1838
BtsIMutI CAGTG 5 cut(s) 118, 435, 671, 894, 1838
Cac8I GCNNGC 6 cut(s) 278, 612, 937, 1153, 1206, 1287
CaiI CAGNNNCTG 2 cut(s) 273, 1115
CciI TCATGA 1 cut(s) 103
CfoI GCGC 1 cut(s) 1672
Cfr13I GGNCC 4 cut(s) 295, 580, 641, 1304
ClaI ATCGAT 1 cut(s) 1236
Csp6I GTAC 4 cut(s) 761, 1075, 1429, 1516
CviQI GTAC 4 cut(s) 761, 1075, 1429, 1516
DdeI CTNAG 6 cut(s) 187, 309, 463, 615, 729, 735
DpnI GATC 9 cut(s) 93, 117, 162, 660, 810, 841, 1058, 1728, 1889
DpnII GATC 9 cut(s) 91, 115, 160, 658, 808, 839, 1056, 1726, 1887
DrdI GACNNNNNNGTC 1 cut(s) 1940
DseDI GACNNNNNNGTC 1 cut(s) 1940
EaeI YGGCCR 1 cut(s) 1032
Eam1104I CTCTTC 3 cut(s) 801, 1368, 1690
EarI CTCTTC 3 cut(s) 801, 1368, 1690
Ecl136II GAGCTC 1 cut(s) 186
Eco130I CCWWGG 4 cut(s) 602, 644, 997, 1559
Eco147I AGGCCT 1 cut(s) 1816
Eco24I GRGCYC 1 cut(s) 188
Eco32I GATATC 3 cut(s) 399, 1474, 1603
Eco47I GGWCC 3 cut(s) 580, 641, 1304
Eco53kI GAGCTC 1 cut(s) 186
Eco57I CTGAAG 4 cut(s) 45, 266, 782, 1344
EcoICRI GAGCTC 1 cut(s) 186
EcoO109I RGGNCCY 1 cut(s) 580
EcoRI GAATTC 1 cut(s) 107
EcoRII CCWGG 3 cut(s) 1041, 1799, 1890
EcoRV GATATC 3 cut(s) 399, 1474, 1603
EcoT14I CCWWGG 4 cut(s) 602, 644, 997, 1559
EcoT38I GRGCYC 1 cut(s) 188
ErhI CCWWGG 4 cut(s) 602, 644, 997, 1559
Esp3I CGTCTC 2 cut(s) 1370, 1482
FalI AAGNNNNNCTT 2 cut(s) 1949, 1981
FaqI GGGAC 3 cut(s) 593, 683, 1403
FbaI TGATCA 2 cut(s) 91, 808
Fnu4HI GCNGC 6 cut(s) 306, 441, 726, 983, 1062, 1113
FokI GGATG 6 cut(s) 17, 118, 467, 632, 887, 1986
FriOI GRGCYC 1 cut(s) 188
Fsp4HI GCNGC 6 cut(s) 306, 441, 726, 983, 1062, 1113
FspBI CTAG 7 cut(s) 332, 444, 491, 572, 1205, 1391, 1851
GlaI GCGC 1 cut(s) 1671
GluI GCNGC 6 cut(s) 306, 441, 726, 983, 1062, 1113
GsaI CCCAGC 1 cut(s) 1860
GsuI CTGGAG 1 cut(s) 1913
HaeII RGCGCY 1 cut(s) 1673
HaeIII GGCC 7 cut(s) 296, 1034, 1041, 1267, 1754, 1816, 1983
HapII CCGG 2 cut(s) 1302, 1663
HhaI GCGC 1 cut(s) 1672
Hin6I GCGC 1 cut(s) 1670
HinP1I GCGC 1 cut(s) 1670
HincII GTYRAC 1 cut(s) 1497
HindII GTYRAC 1 cut(s) 1497
HindIII AAGCTT 2 cut(s) 1128, 1577
HinfI GANTC 7 cut(s) 86, 494, 629, 731, 803, 1410, 1590
HpaII CCGG 2 cut(s) 1302, 1663
HphI GGTGA 4 cut(s) 353, 569, 689, 1013
Hpy166II GTNNAC 3 cut(s) 830, 1497, 1507
Hpy188I TCNGA 9 cut(s) 69, 91, 190, 240, 403, 736, 808, 903, 1586
Hpy8I GTNNAC 3 cut(s) 830, 1497, 1507
HpyAV CCTTC 6 cut(s) 159, 357, 374, 686, 1368, 1654
HpyCH4III ACNGT 7 cut(s) 290, 641, 1501, 1546, 1556, 1570, 1659
HpyCH4V TGCA 8 cut(s) 276, 923, 935, 956, 1289, 1404, 1640, 1969
HpyF10VI GCNNNNNNNGC 7 cut(s) 302, 429, 607, 722, 979, 1637, 1813
HpyF3I CTNAG 6 cut(s) 187, 309, 463, 615, 729, 735
HspAI GCGC 1 cut(s) 1670
KflI GGGWCCC 1 cut(s) 580
Kpn2I TCCGGA 1 cut(s) 1301
Ksp22I TGATCA 2 cut(s) 91, 808
Kzo9I GATC 9 cut(s) 91, 115, 160, 658, 808, 839, 1056, 1726, 1887
LmnI GCTCC 5 cut(s) 437, 607, 648, 699, 1628
Lsp1109I GCAGC 5 cut(s) 427, 737, 994, 1048, 1099
LweI GCATC 2 cut(s) 231, 1272
MaeI CTAG 7 cut(s) 332, 444, 491, 572, 1205, 1391, 1851
MaeIII GTNAC 2 cut(s) 1216, 1869
MalI GATC 9 cut(s) 93, 117, 162, 660, 810, 841, 1058, 1728, 1889
MboI GATC 9 cut(s) 91, 115, 160, 658, 808, 839, 1056, 1726, 1887
MflI RGATCY 2 cut(s) 839, 1887
MhlI GDGCHC 1 cut(s) 188
MlsI TGGCCA 1 cut(s) 1034
MluCI AATT 5 cut(s) 8, 28, 107, 1334, 1432
MluNI TGGCCA 1 cut(s) 1034
MlyI GAGTC 2 cut(s) 623, 740
MmeI TCCRAC 1 cut(s) 449
Mox20I TGGCCA 1 cut(s) 1034
MroI TCCGGA 1 cut(s) 1301
MroXI GAANNNNTTC 1 cut(s) 29
MscI TGGCCA 1 cut(s) 1034
MseI TTAA 6 cut(s) 39, 414, 1124, 1461, 1523, 1623
MslI CAYNNNNRTG 3 cut(s) 102, 387, 1002
Msp20I TGGCCA 1 cut(s) 1034
MspA1I CMGCKG 3 cut(s) 308, 728, 1112
MspI CCGG 2 cut(s) 1302, 1663
MspR9I CCNGG 4 cut(s) 1043, 1664, 1801, 1892
MvaI CCWGG 3 cut(s) 1043, 1801, 1892
MwoI GCNNNNNNNGC 7 cut(s) 302, 429, 607, 722, 979, 1637, 1813
NciI CCSGG 1 cut(s) 1664
NcoI CCATGG 1 cut(s) 997
NdeII GATC 9 cut(s) 91, 115, 160, 658, 808, 839, 1056, 1726, 1887
NheI GCTAGC 1 cut(s) 1204
NspI RCATGY 4 cut(s) 280, 1155, 1791, 1997
PaeI GCATGC 2 cut(s) 280, 1155
PagI TCATGA 1 cut(s) 103
PceI AGGCCT 1 cut(s) 1816
PdmI GAANNNNTTC 1 cut(s) 29
PfeI GAWTC 5 cut(s) 86, 494, 803, 1410, 1590
PfoI TCCNGGA 3 cut(s) 1662, 1799, 1890
PkrI GCNGC 6 cut(s) 307, 442, 727, 984, 1063, 1114
PleI GAGTC 2 cut(s) 623, 739
PpsI GAGTC 2 cut(s) 623, 739
PpuMI RGGWCCY 1 cut(s) 580
PsiI TTATAA 1 cut(s) 1101
Psp124BI GAGCTC 1 cut(s) 188
Psp5II RGGWCCY 1 cut(s) 580
Psp6I CCWGG 3 cut(s) 1041, 1799, 1890
PspFI CCCAGC 1 cut(s) 1856
PspGI CCWGG 3 cut(s) 1041, 1799, 1890
PspPI GGNCC 4 cut(s) 295, 580, 641, 1304
PspPPI RGGWCCY 1 cut(s) 580
PsrI GAACNNNNNNTAC 2 cut(s) 1499, 1531
PstNI CAGNNNCTG 2 cut(s) 273, 1115
PsuI RGATCY 2 cut(s) 839, 1887
PvuII CAGCTG 2 cut(s) 728, 1112
RsaI GTAC 4 cut(s) 762, 1076, 1430, 1517
RsaNI GTAC 4 cut(s) 761, 1075, 1429, 1516
RseI CAYNNNNRTG 3 cut(s) 102, 387, 1002
SacI GAGCTC 1 cut(s) 188
SaqAI TTAA 6 cut(s) 39, 414, 1124, 1461, 1523, 1623
SatI GCNGC 6 cut(s) 306, 441, 726, 983, 1062, 1113
Sau3AI GATC 9 cut(s) 91, 115, 160, 658, 808, 839, 1056, 1726, 1887
Sau96I GGNCC 4 cut(s) 295, 580, 641, 1304
SchI GAGTC 2 cut(s) 623, 740
ScrFI CCNGG 4 cut(s) 1043, 1664, 1801, 1892
SduI GDGCHC 1 cut(s) 188
SfaNI GCATC 2 cut(s) 231, 1272
SfcI CTRYAG 1 cut(s) 1500
SinI GGWCC 3 cut(s) 580, 641, 1304
SmiMI CAYNNNNRTG 3 cut(s) 102, 387, 1002
SmlI CTYRAG 1 cut(s) 968
SmoI CTYRAG 1 cut(s) 968
SphI GCATGC 2 cut(s) 280, 1155
Sse9I AATT 5 cut(s) 8, 28, 107, 1334, 1432
SseBI AGGCCT 1 cut(s) 1816
SsiI CCGC 3 cut(s) 306, 1064, 1387
SspMI CTAG 7 cut(s) 332, 444, 491, 572, 1205, 1391, 1851
SstI GAGCTC 1 cut(s) 188
StuI AGGCCT 1 cut(s) 1816
StyD4I CCNGG 4 cut(s) 1041, 1662, 1799, 1890
StyI CCWWGG 4 cut(s) 602, 644, 997, 1559
TaaI ACNGT 7 cut(s) 290, 641, 1501, 1546, 1556, 1570, 1659
TaqI TCGA 6 cut(s) 353, 1236, 1354, 1650, 1863, 1944
TasI AATT 5 cut(s) 8, 28, 107, 1334, 1432
TatI WGTACW 3 cut(s) 1074, 1428, 1515
TauI GCSGC 1 cut(s) 308
TfiI GAWTC 5 cut(s) 86, 494, 803, 1410, 1590
Tru1I TTAA 6 cut(s) 39, 414, 1124, 1461, 1523, 1623
Tru9I TTAA 6 cut(s) 39, 414, 1124, 1461, 1523, 1623
TscAI CASTG 5 cut(s) 118, 442, 671, 894, 1838
TseI GCWGC 5 cut(s) 440, 725, 982, 1061, 1112
TspGWI ACGGA 1 cut(s) 1059
TspRI CASTG 5 cut(s) 118, 442, 671, 894, 1838
VpaK11BI GGWCC 3 cut(s) 580, 641, 1304
XapI RAATTY 3 cut(s) 8, 107, 1334
XbaI TCTAGA 2 cut(s) 490, 571
XceI RCATGY 4 cut(s) 280, 1155, 1791, 1997
XmnI GAANNNNTTC 1 cut(s) 29
XspI CTAG 7 cut(s) 332, 444, 491, 572, 1205, 1391, 1851
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.