FvH4_3g36760

Belongs to the GRAS family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000175
Physical Location & Seq
Forward (+)
31494086 .. 31495112
1027 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g36760.t1

Sequence Viewer

Length: 504 bp
ATGCCAACATCTACAGATCAGAATGACATTTTTACTGAGTTTGATCAACAGAATCATGAATTCACTGATCCCACTTCCTTTCTGTCCAATCCAAACCCTCCTCCTTGTGATGATTATTCATGCCGGTCTTTCGGTGTCAGTGTGACCTCAGAGGCCTCCAGAGCTACTCTCCAACATATAAGAGAGATGCTTATGGAGGAAGAGCTGGAGAACAGACCCTGCATGCTTCAGGACTTTTTGGCCCTCCAAGCTGCTGAGAAATCCTTGGAAGATGTCCTAATTCAGCAGTATTCTCCTCCGACGAATCCCCTTCTTGCTTCTTCTATTGAGCCAAGTGCTGAAAACTCTTATGATTTCATTAACCACAGCAGTAATAGCTCCAGTGCTGCTAGGAGCTGGGATGATGGCTCAGGTTGGATTTCCTTTCAAAAAGATCATAATGACTCAACAAAAGGATCAAGGAGCAAAAAAGATCGTCACAGCTGGGAGAATGGCGTTATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GRAS

Protein Analysis

168

Amino Acids

18.8

Weight (kDa)

4.48

Isoelectric Point (pI)

64.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000175)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G46600 AT3G46600 AT3G46600 AT5G59450
fragaria_vesca FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36691 FvH4_3g36700 FvH4_3g36711 FvH4_3g36711 FvH4_3g36720 FvH4_3g36730 FvH4_3g36760
malus_domestica MD03G1088900.v1.1 MD03G1089100.v1.1 MD03G1089200.v1.1 MD03G1089300.v1.1 MD11G1097900.v1.1 MD11G1098000.v1.1 MD11G1098100.v1.1 MD11G1098400.v1.1 MD11G1098900.v1.1
prunus_persica Prupe.6G073300_v2.0.a1 Prupe.6G073400_v2.0.a1 Prupe.6G073400_v2.0.a1 Prupe.6G073500_v2.0.a1 Prupe.6G073600_v2.0.a1 Prupe.6G073700_v2.0.a1 Prupe.6G073800_v2.0.a1 Prupe.I004400_v2.0.a1 Prupe.I004500_v2.0.a1
pyrus_communis pycom03g07050 pycom03g07060 pycom03g07070 pycom03g07110 pycom04g11870 pycom11g08270 pycom11g08280
rosa_chinensis RchiOBHm_Chr5g0065591 RchiOBHm_Chr5g0065601 RchiOBHm_Chr5g0065621 RchiOBHm_Chr5g0065631 RchiOBHm_Chr5g0065641 RchiOBHm_Chr5g0065651 RchiOBHm_Chr5g0065671 RchiOBHm_Chr5g0065721 RchiOBHm_Chr5g0065731 RchiOBHm_Chr5g0065751 RchiOBHm_Chr5g0065791 RchiOBHm_Chr5g0065811
rosa_laevigata RLG00000035800 RLG00000035801 RLG00000035803 RLG00000035804 RLG00000035805 RLG00000035806 RLG00000035807 RLG00000035808 RLG00000035809 RLG00000035810 RLG00000035813 RLG00000035814 RLG00000035816
rosa_multiflora Rmu_co8233911.1_g000001 Rmu_co8258053.1_g000001 Rmu_co8279117.1_g000001 Rmu_sc0000235.1_g000004 Rmu_sc0000235.1_g000024 Rmu_sc0000235.1_g000060 Rmu_sc0000235.1_g000074 Rmu_sc0001010.1_g000001 Rmu_sc0001010.1_g000015 Rmu_sc0001010.1_g000030 Rmu_sc0001010.1_g000037 Rmu_sc0001010.1_g000043 Rmu_sc0001010.1_g000063 Rmu_sc0001010.1_g000066 Rmu_sc0003636.1_g000008 Rmu_sc0003636.1_g000011 Rmu_sc0003636.1_g000012 Rmu_sc0003636.1_g000015 Rmu_sc0005971.1_g000017 Rmu_sc0008231.1_g000001 Rmu_sc0032155.1_g000001
rosa_roxburghii Rroxscaffold_1G00015360 Rroxscaffold_1G00015390 Rroxscaffold_1G00015410 Rroxscaffold_1G00015430 Rroxscaffold_1G00015490 Rroxscaffold_1G00015520 Rroxscaffold_1G00015530 Rroxscaffold_1G00015550 Rroxscaffold_1G00015560 Rroxscaffold_1G00015580 Rroxscaffold_1G00015600 Rroxscaffold_1G00015610 Rroxscaffold_1G00015620 Rroxscaffold_1G00015630
rosa_rugosa Rorug05G0372800 Rorug05G0372800 Rorug05G0372800 Rorug05G0372800 Rorug05G0373100 Rorug05G0373100 Rorug05G0373200 Rorug05G0373300 Rorug05G0373400 Rorug05G0373500 Rorug05G0373600 Rorug05G0373700 Rorug05G0378700
rosa_samantha Rh5AG430900 Rh5AG431000 Rh5AG431100 Rh5AG431200 Rh5AG431700 Rh5AG431800 Rh5AG431900 Rh5AG432200 Rh5AG432500 Rh5BG445200 Rh5BG446000 Rh5BG447100 Rh5BG447200 Rh5BG447400 Rh5BG447800 Rh5BG447900 Rh5BG448000 Rh5BG448100 Rh5BG448300 Rh5BG448400 Rh5BG448500 Rh5BG448600 Rh5CG467400 Rh5CG468000 Rh5CG469000 Rh5CG469100 Rh5CG469400 Rh5CG469700 Rh5CG469900 Rh5CG470100 Rh5CG470200 Rh5CG470600 Rh5CG470700 Rh5CG470800 Rh5DG459500 Rh5DG459700 Rh5DG459800 Rh5DG460000 Rh5DG460900 Rh5DG461300 Rh5DG461500 Rh5DG461900 Rh5DG462000 Rh5DG462100
rosa_wichuraiana Rw5G040420 Rw5G040430 Rw5G040440 Rw5G040470 Rw5G040480 Rw5G040500 Rw5G040510 Rw5G040530 Rw5G040550 Rw5G040560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 62, 463
AcsI RAATTY 1 cut(s) 59
AcuI CTGAAG 1 cut(s) 212
AgsI TTSAA 1 cut(s) 428
AluBI AGCT 6 cut(s) 164, 205, 251, 378, 396, 483
AluI AGCT 6 cut(s) 164, 205, 251, 378, 396, 483
AlwI GGATC 2 cut(s) 62, 463
AlwNI CAGNNNCTG 1 cut(s) 219
AoxI GGCC 2 cut(s) 153, 240
ApeKI GCWGC 2 cut(s) 251, 386
ApoI RAATTY 1 cut(s) 59
AspS9I GGNCC 1 cut(s) 241
BbvI GCAGC 2 cut(s) 238, 373
BccI CCATC 1 cut(s) 398
BclI TGATCA 1 cut(s) 43
BfaI CTAG 2 cut(s) 390, 502
BfmI CTRYAG 1 cut(s) 12
BisI GCNGC 2 cut(s) 252, 387
BlsI GCNGC 2 cut(s) 253, 388
BmgT120I GGNCC 1 cut(s) 241
BmsI GCATC 1 cut(s) 177
BplI GAGNNNNNCTC 2 cut(s) 153, 185
BpmI CTGGAG 3 cut(s) 142, 227, 364
Bpu10I CCTNAGC 1 cut(s) 409
BsaJI CCNNGG 1 cut(s) 264
Bse118I RCCGGY 1 cut(s) 123
Bse1I ACTGG 1 cut(s) 381
BseDI CCNNGG 1 cut(s) 264
BseGI GGATG 1 cut(s) 406
BseMII CTCAG 4 cut(s) 27, 162, 246, 423
BseNI ACTGG 1 cut(s) 381
BseRI GAGGAG 2 cut(s) 90, 285
BseXI GCAGC 2 cut(s) 238, 373
BseYI CCCAGC 2 cut(s) 396, 483
BshFI GGCC 2 cut(s) 155, 242
BsiSI CCGG 1 cut(s) 124
BsnI GGCC 2 cut(s) 155, 242
Bsp143I GATC 6 cut(s) 16, 43, 67, 433, 455, 472
BspANI GGCC 2 cut(s) 155, 242
BspCNI CTCAG 4 cut(s) 28, 161, 247, 422
BspHI TCATGA 1 cut(s) 55
BspPI GGATC 2 cut(s) 62, 463
BspQI GCTCTTC 1 cut(s) 195
BsrFI RCCGGY 1 cut(s) 123
BsrI ACTGG 1 cut(s) 381
BssAI RCCGGY 1 cut(s) 123
BssECI CCNNGG 1 cut(s) 264
BssMI GATC 6 cut(s) 16, 43, 67, 433, 455, 472
BssT1I CCWWGG 1 cut(s) 264
Bst6I CTCTTC 1 cut(s) 195
BstC8I GCNNGC 1 cut(s) 224
BstDEI CTNAG 4 cut(s) 36, 148, 255, 409
BstF5I GGATG 1 cut(s) 406
BstKTI GATC 6 cut(s) 19, 46, 70, 436, 458, 475
BstMBI GATC 6 cut(s) 16, 43, 67, 433, 455, 472
BstMWI GCNNNNNNNGC 3 cut(s) 161, 248, 375
BstNSI RCATGY 1 cut(s) 226
BstSFI CTRYAG 1 cut(s) 12
BstV1I GCAGC 2 cut(s) 238, 373
BsuRI GGCC 2 cut(s) 155, 242
BtsCI GGATG 1 cut(s) 406
BtsIMutI CAGTG 3 cut(s) 63, 145, 388
Cac8I GCNNGC 1 cut(s) 224
CaiI CAGNNNCTG 1 cut(s) 219
CciI TCATGA 1 cut(s) 55
Cfr10I RCCGGY 1 cut(s) 123
Cfr13I GGNCC 1 cut(s) 241
CviAII CATG 3 cut(s) 56, 120, 223
DdeI CTNAG 4 cut(s) 36, 148, 255, 409
DpnI GATC 6 cut(s) 18, 45, 69, 435, 457, 474
DpnII GATC 6 cut(s) 16, 43, 67, 433, 455, 472
Eam1104I CTCTTC 1 cut(s) 195
EarI CTCTTC 1 cut(s) 195
Eco130I CCWWGG 1 cut(s) 264
Eco147I AGGCCT 1 cut(s) 155
Eco57I CTGAAG 1 cut(s) 212
EcoRI GAATTC 1 cut(s) 59
EcoT14I CCWWGG 1 cut(s) 264
ErhI CCWWGG 1 cut(s) 264
FaeI CATG 3 cut(s) 59, 123, 226
FaiI YATR 8 cut(s) 57, 121, 177, 179, 194, 224, 351, 438
FatI CATG 3 cut(s) 55, 119, 222
FbaI TGATCA 1 cut(s) 43
Fnu4HI GCNGC 2 cut(s) 252, 387
FokI GGATG 1 cut(s) 413
Fsp4HI GCNGC 2 cut(s) 252, 387
FspBI CTAG 2 cut(s) 390, 502
GluI GCNGC 2 cut(s) 252, 387
GsaI CCCAGC 2 cut(s) 400, 487
GsuI CTGGAG 3 cut(s) 142, 227, 364
HaeIII GGCC 2 cut(s) 155, 242
HapII CCGG 1 cut(s) 124
Hin1II CATG 3 cut(s) 59, 123, 226
HinfI GANTC 3 cut(s) 52, 304, 443
HpaII CCGG 1 cut(s) 124
Hpy188I TCNGA 3 cut(s) 21, 151, 300
Hpy188III TCNNGA 3 cut(s) 56, 159, 230
Hpy99I CGWCG 1 cut(s) 304
HpyAV CCTTC 1 cut(s) 320
HpyCH4V TGCA 1 cut(s) 222
HpyF10VI GCNNNNNNNGC 3 cut(s) 161, 248, 375
HpyF3I CTNAG 4 cut(s) 36, 148, 255, 409
Hsp92II CATG 3 cut(s) 59, 123, 226
Ksp22I TGATCA 1 cut(s) 43
Kzo9I GATC 6 cut(s) 16, 43, 67, 433, 455, 472
LguI GCTCTTC 1 cut(s) 195
LmnI GCTCC 3 cut(s) 383, 393, 462
LpnPI CCDG 9 cut(s) 137, 172, 191, 215, 232, 382, 394, 396, 469
Lsp1109I GCAGC 2 cut(s) 238, 373
LweI GCATC 1 cut(s) 177
MaeI CTAG 2 cut(s) 390, 502
MaeIII GTNAC 2 cut(s) 142, 476
MalI GATC 6 cut(s) 18, 45, 69, 435, 457, 474
MboI GATC 6 cut(s) 16, 43, 67, 433, 455, 472
MboII GAAGA 3 cut(s) 212, 281, 312
MluCI AATT 2 cut(s) 59, 279
MlyI GAGTC 1 cut(s) 437
MmeI TCCRAC 3 cut(s) 196, 323, 395
MnlI CCTC 8 cut(s) 108, 111, 145, 157, 166, 190, 254, 306
MseI TTAA 1 cut(s) 360
MspA1I CMGCKG 1 cut(s) 483
MspI CCGG 1 cut(s) 124
MwoI GCNNNNNNNGC 3 cut(s) 161, 248, 375
NdeII GATC 6 cut(s) 16, 43, 67, 433, 455, 472
NlaIII CATG 3 cut(s) 59, 123, 226
NmuCI GTSAC 2 cut(s) 142, 476
NspI RCATGY 1 cut(s) 226
PaeI GCATGC 1 cut(s) 226
PagI TCATGA 1 cut(s) 55
PceI AGGCCT 1 cut(s) 155
PciSI GCTCTTC 1 cut(s) 195
PfeI GAWTC 2 cut(s) 52, 304
PkrI GCNGC 2 cut(s) 253, 388
PleI GAGTC 1 cut(s) 437
PpsI GAGTC 1 cut(s) 437
PspFI CCCAGC 2 cut(s) 396, 483
PspPI GGNCC 1 cut(s) 241
PstNI CAGNNNCTG 1 cut(s) 219
PvuII CAGCTG 1 cut(s) 483
SapI GCTCTTC 1 cut(s) 195
SaqAI TTAA 1 cut(s) 360
SatI GCNGC 2 cut(s) 252, 387
Sau3AI GATC 6 cut(s) 16, 43, 67, 433, 455, 472
Sau96I GGNCC 1 cut(s) 241
SchI GAGTC 1 cut(s) 437
SetI ASST 8 cut(s) 149, 166, 207, 253, 380, 398, 415, 485
SfaNI GCATC 1 cut(s) 177
SfcI CTRYAG 1 cut(s) 12
SphI GCATGC 1 cut(s) 226
Sse9I AATT 2 cut(s) 59, 279
SseBI AGGCCT 1 cut(s) 155
SspMI CTAG 2 cut(s) 390, 502
StuI AGGCCT 1 cut(s) 155
StyI CCWWGG 1 cut(s) 264
TasI AATT 2 cut(s) 59, 279
TfiI GAWTC 2 cut(s) 52, 304
Tru1I TTAA 1 cut(s) 360
Tru9I TTAA 1 cut(s) 360
TscAI CASTG 3 cut(s) 70, 145, 388
TseFI GTSAC 2 cut(s) 142, 476
TseI GCWGC 2 cut(s) 251, 386
Tsp45I GTSAC 2 cut(s) 142, 476
TspDTI ATGAA 3 cut(s) 72, 108, 346
TspRI CASTG 3 cut(s) 70, 145, 388
XapI RAATTY 1 cut(s) 59
XceI RCATGY 1 cut(s) 226
XspI CTAG 2 cut(s) 390, 502
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.