Rmu_sc0005971.1_g000017

oxidosqualene cyclase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005971.1
OG0000175
Physical Location & Seq
Reverse (-)
39313 .. 39792
480 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005971.1_g000017.1.cds

Sequence Viewer

Length: 480 bp
atggagaactctccgagagatgtcgtcctgaagttgatcaagaatataaaccccaaccttttcattcatgggattagcaatgggacacacaatacacccttctttgctacacggtttagagaggcactcttgcactactatgcagtgtttgatgtgtttgaagcaaccaatcctcatgaagagaatcgttggatgatgttggagaaagacttccatggtagagacataatgaatatcatagcatgcgagggagtggaaagagttgaaaggcctgagacttacaagaagtggcagatcaggaatgtgagggctgggttgaagcagcttccactggaccgagaactattgaagaaagcgaagaaattgtcggagctaatgggttatcataatgattttggacttgatgaagatgggcattggatgctgcatggatggaaaggaaggatcctcacagctctttcattttggaaacctgcctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00100 ko00909 ko01100 ko01110 map00100 map00909 map01100 map01110
Pfam Domains
Protein Families
Prenyltrans SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

159

Amino Acids

18.76

Weight (kDa)

8.67

Isoelectric Point (pI)

39.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000175)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G46600 AT3G46600 AT3G46600 AT5G59450
fragaria_vesca FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36691 FvH4_3g36700 FvH4_3g36711 FvH4_3g36711 FvH4_3g36720 FvH4_3g36730 FvH4_3g36760
malus_domestica MD03G1088900.v1.1 MD03G1089100.v1.1 MD03G1089200.v1.1 MD03G1089300.v1.1 MD11G1097900.v1.1 MD11G1098000.v1.1 MD11G1098100.v1.1 MD11G1098400.v1.1 MD11G1098900.v1.1
prunus_persica Prupe.6G073300_v2.0.a1 Prupe.6G073400_v2.0.a1 Prupe.6G073400_v2.0.a1 Prupe.6G073500_v2.0.a1 Prupe.6G073600_v2.0.a1 Prupe.6G073700_v2.0.a1 Prupe.6G073800_v2.0.a1 Prupe.I004400_v2.0.a1 Prupe.I004500_v2.0.a1
pyrus_communis pycom03g07050 pycom03g07060 pycom03g07070 pycom03g07110 pycom04g11870 pycom11g08270 pycom11g08280
rosa_chinensis RchiOBHm_Chr5g0065591 RchiOBHm_Chr5g0065601 RchiOBHm_Chr5g0065621 RchiOBHm_Chr5g0065631 RchiOBHm_Chr5g0065641 RchiOBHm_Chr5g0065651 RchiOBHm_Chr5g0065671 RchiOBHm_Chr5g0065721 RchiOBHm_Chr5g0065731 RchiOBHm_Chr5g0065751 RchiOBHm_Chr5g0065791 RchiOBHm_Chr5g0065811
rosa_laevigata RLG00000035800 RLG00000035801 RLG00000035803 RLG00000035804 RLG00000035805 RLG00000035806 RLG00000035807 RLG00000035808 RLG00000035809 RLG00000035810 RLG00000035813 RLG00000035814 RLG00000035816
rosa_multiflora Rmu_co8233911.1_g000001 Rmu_co8258053.1_g000001 Rmu_co8279117.1_g000001 Rmu_sc0000235.1_g000004 Rmu_sc0000235.1_g000024 Rmu_sc0000235.1_g000060 Rmu_sc0000235.1_g000074 Rmu_sc0001010.1_g000001 Rmu_sc0001010.1_g000015 Rmu_sc0001010.1_g000030 Rmu_sc0001010.1_g000037 Rmu_sc0001010.1_g000043 Rmu_sc0001010.1_g000063 Rmu_sc0001010.1_g000066 Rmu_sc0003636.1_g000008 Rmu_sc0003636.1_g000011 Rmu_sc0003636.1_g000012 Rmu_sc0003636.1_g000015 Rmu_sc0005971.1_g000017 Rmu_sc0008231.1_g000001 Rmu_sc0032155.1_g000001
rosa_roxburghii Rroxscaffold_1G00015360 Rroxscaffold_1G00015390 Rroxscaffold_1G00015410 Rroxscaffold_1G00015430 Rroxscaffold_1G00015490 Rroxscaffold_1G00015520 Rroxscaffold_1G00015530 Rroxscaffold_1G00015550 Rroxscaffold_1G00015560 Rroxscaffold_1G00015580 Rroxscaffold_1G00015600 Rroxscaffold_1G00015610 Rroxscaffold_1G00015620 Rroxscaffold_1G00015630
rosa_rugosa Rorug05G0372800 Rorug05G0372800 Rorug05G0372800 Rorug05G0372800 Rorug05G0373100 Rorug05G0373100 Rorug05G0373200 Rorug05G0373300 Rorug05G0373400 Rorug05G0373500 Rorug05G0373600 Rorug05G0373700 Rorug05G0378700
rosa_samantha Rh5AG430900 Rh5AG431000 Rh5AG431100 Rh5AG431200 Rh5AG431700 Rh5AG431800 Rh5AG431900 Rh5AG432200 Rh5AG432500 Rh5BG445200 Rh5BG446000 Rh5BG447100 Rh5BG447200 Rh5BG447400 Rh5BG447800 Rh5BG447900 Rh5BG448000 Rh5BG448100 Rh5BG448300 Rh5BG448400 Rh5BG448500 Rh5BG448600 Rh5CG467400 Rh5CG468000 Rh5CG469000 Rh5CG469100 Rh5CG469400 Rh5CG469700 Rh5CG469900 Rh5CG470100 Rh5CG470200 Rh5CG470600 Rh5CG470700 Rh5CG470800 Rh5DG459500 Rh5DG459700 Rh5DG459800 Rh5DG460000 Rh5DG460900 Rh5DG461300 Rh5DG461500 Rh5DG461900 Rh5DG462000 Rh5DG462100
rosa_wichuraiana Rw5G040420 Rw5G040430 Rw5G040440 Rw5G040470 Rw5G040480 Rw5G040500 Rw5G040510 Rw5G040530 Rw5G040550 Rw5G040560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 439, 452
AcuI CTGAAG 1 cut(s) 50
AgsI TTSAA 4 cut(s) 161, 266, 319, 349
AluBI AGCT 3 cut(s) 325, 373, 455
AluI AGCT 3 cut(s) 325, 373, 455
Alw26I GTCTC 2 cut(s) 216, 269
AlwI GGATC 2 cut(s) 439, 452
AoxI GGCC 1 cut(s) 269
ApeKI GCWGC 2 cut(s) 322, 424
ArsI GACNNNNNNTTYG 2 cut(s) 350, 382
Asp700I GAANNNNTTC 1 cut(s) 209
AspS9I GGNCC 1 cut(s) 334
AvaII GGWCC 1 cut(s) 334
BamHI GGATCC 1 cut(s) 444
BbvI GCAGC 2 cut(s) 334, 411
BccI CCATC 2 cut(s) 404, 426
BclI TGATCA 1 cut(s) 36
BcoDI GTCTC 2 cut(s) 216, 269
BfaI CTAG 1 cut(s) 478
BisI GCNGC 2 cut(s) 323, 425
BlsI GCNGC 2 cut(s) 324, 426
Bme18I GGWCC 1 cut(s) 334
BmgT120I GGNCC 1 cut(s) 334
BmiI GGNNCC 1 cut(s) 446
BmsI GCATC 1 cut(s) 411
BplI GAGNNNNNCTC 2 cut(s) 111, 143
BsaJI CCNNGG 1 cut(s) 214
Bse1I ACTGG 1 cut(s) 336
Bse3DI GCAATG 1 cut(s) 85
BseDI CCNNGG 1 cut(s) 214
BseGI GGATG 3 cut(s) 198, 426, 437
BseMI GCAATG 1 cut(s) 85
BseMII CTCAG 1 cut(s) 264
BseNI ACTGG 1 cut(s) 336
BseXI GCAGC 2 cut(s) 334, 411
BseYI CCCAGC 1 cut(s) 311
BshFI GGCC 1 cut(s) 271
BslFI GGGAC 1 cut(s) 97
BsmAI GTCTC 2 cut(s) 216, 269
BsmFI GGGAC 1 cut(s) 97
BsnI GGCC 1 cut(s) 271
Bsp143I GATC 3 cut(s) 36, 294, 444
Bsp19I CCATGG 1 cut(s) 214
BspANI GGCC 1 cut(s) 271
BspCNI CTCAG 1 cut(s) 265
BspHI TCATGA 1 cut(s) 175
BspLI GGNNCC 1 cut(s) 446
BspPI GGATC 2 cut(s) 439, 452
BsrDI GCAATG 1 cut(s) 85
BsrI ACTGG 1 cut(s) 336
BssECI CCNNGG 1 cut(s) 214
BssMI GATC 3 cut(s) 36, 294, 444
BssT1I CCWWGG 1 cut(s) 214
Bst4CI ACNGT 1 cut(s) 114
Bst6I CTCTTC 1 cut(s) 174
BstAPI GCANNNNNTGC 1 cut(s) 421
BstC8I GCNNGC 1 cut(s) 244
BstDEI CTNAG 1 cut(s) 273
BstDSI CCRYGG 1 cut(s) 214
BstF5I GGATG 3 cut(s) 198, 426, 437
BstKTI GATC 3 cut(s) 39, 297, 447
BstMAI GTCTC 2 cut(s) 216, 269
BstMBI GATC 3 cut(s) 36, 294, 444
BstMWI GCNNNNNNNGC 1 cut(s) 421
BstNSI RCATGY 1 cut(s) 246
BstV1I GCAGC 2 cut(s) 334, 411
BstX2I RGATCY 1 cut(s) 444
BstYI RGATCY 1 cut(s) 444
BsuRI GGCC 1 cut(s) 271
BtgI CCRYGG 1 cut(s) 214
BtsCI GGATG 3 cut(s) 198, 426, 437
BtsI GCAGTG 1 cut(s) 150
BtsIMutI CAGTG 2 cut(s) 150, 329
Cac8I GCNNGC 1 cut(s) 244
CciI TCATGA 1 cut(s) 175
Cfr13I GGNCC 1 cut(s) 334
CviAII CATG 5 cut(s) 68, 176, 215, 243, 428
CviJI RGCY 5 cut(s) 271, 311, 325, 373, 455
CviKI_1 RGCY 5 cut(s) 271, 311, 325, 373, 455
DdeI CTNAG 1 cut(s) 273
DpnI GATC 3 cut(s) 38, 296, 446
DpnII GATC 3 cut(s) 36, 294, 444
Eam1104I CTCTTC 1 cut(s) 174
EarI CTCTTC 1 cut(s) 174
Eco130I CCWWGG 1 cut(s) 214
Eco147I AGGCCT 1 cut(s) 271
Eco47I GGWCC 1 cut(s) 334
Eco57I CTGAAG 1 cut(s) 50
EcoT14I CCWWGG 1 cut(s) 214
ErhI CCWWGG 1 cut(s) 214
FaeI CATG 5 cut(s) 71, 179, 218, 246, 431
FaqI GGGAC 1 cut(s) 97
FatI CATG 5 cut(s) 67, 175, 214, 242, 427
FbaI TGATCA 1 cut(s) 36
Fnu4HI GCNGC 2 cut(s) 323, 425
FokI GGATG 3 cut(s) 205, 433, 444
Fsp4HI GCNGC 2 cut(s) 323, 425
FspBI CTAG 1 cut(s) 478
GluI GCNGC 2 cut(s) 323, 425
GsaI CCCAGC 1 cut(s) 315
HaeIII GGCC 1 cut(s) 271
Hin1II CATG 5 cut(s) 71, 179, 218, 246, 431
HinfI GANTC 1 cut(s) 184
Hpy188I TCNGA 2 cut(s) 15, 370
Hpy188III TCNNGA 4 cut(s) 28, 40, 176, 298
HpyAV CCTTC 2 cut(s) 109, 435
HpyCH4III ACNGT 1 cut(s) 114
HpyCH4V TGCA 3 cut(s) 133, 143, 427
HpyF10VI GCNNNNNNNGC 1 cut(s) 421
HpyF3I CTNAG 1 cut(s) 273
Hsp92II CATG 5 cut(s) 71, 179, 218, 246, 431
Ksp22I TGATCA 1 cut(s) 36
Kzo9I GATC 3 cut(s) 36, 294, 444
LmnI GCTCC 1 cut(s) 370
LpnPI CCDG 5 cut(s) 41, 283, 285, 297, 317
Lsp1109I GCAGC 2 cut(s) 334, 411
LweI GCATC 1 cut(s) 411
MaeI CTAG 1 cut(s) 478
MalI GATC 3 cut(s) 38, 296, 446
MboI GATC 3 cut(s) 36, 294, 444
MboII GAAGA 4 cut(s) 191, 361, 370, 419
MflI RGATCY 1 cut(s) 444
MluCI AATT 1 cut(s) 362
MmeI TCCRAC 3 cut(s) 170, 180, 348
MnlI CCTC 5 cut(s) 115, 183, 241, 300, 458
MroXI GAANNNNTTC 1 cut(s) 209
MslI CAYNNNNRTG 1 cut(s) 138
MwoI GCNNNNNNNGC 1 cut(s) 421
NcoI CCATGG 1 cut(s) 214
NdeII GATC 3 cut(s) 36, 294, 444
NlaIII CATG 5 cut(s) 71, 179, 218, 246, 431
NlaIV GGNNCC 1 cut(s) 446
NspI RCATGY 1 cut(s) 246
PaeI GCATGC 1 cut(s) 246
PagI TCATGA 1 cut(s) 175
PceI AGGCCT 1 cut(s) 271
PdmI GAANNNNTTC 1 cut(s) 209
PfeI GAWTC 1 cut(s) 184
PkrI GCNGC 2 cut(s) 324, 426
PspFI CCCAGC 1 cut(s) 311
PspN4I GGNNCC 1 cut(s) 446
PspPI GGNCC 1 cut(s) 334
PsuI RGATCY 1 cut(s) 444
RseI CAYNNNNRTG 1 cut(s) 138
SatI GCNGC 2 cut(s) 323, 425
Sau3AI GATC 3 cut(s) 36, 294, 444
Sau96I GGNCC 1 cut(s) 334
SetI ASST 5 cut(s) 60, 327, 375, 457, 475
SfaNI GCATC 1 cut(s) 411
SinI GGWCC 1 cut(s) 334
SmiMI CAYNNNNRTG 1 cut(s) 138
SphI GCATGC 1 cut(s) 246
Sse9I AATT 1 cut(s) 362
SseBI AGGCCT 1 cut(s) 271
SspMI CTAG 1 cut(s) 478
StuI AGGCCT 1 cut(s) 271
StyI CCWWGG 1 cut(s) 214
TaaI ACNGT 1 cut(s) 114
TaqII GACCGA 1 cut(s) 351
TasI AATT 1 cut(s) 362
TfiI GAWTC 1 cut(s) 184
TscAI CASTG 2 cut(s) 150, 336
TseI GCWGC 2 cut(s) 322, 424
TspDTI ATGAA 6 cut(s) 52, 56, 192, 245, 420, 450
TspRI CASTG 2 cut(s) 150, 336
VpaK11BI GGWCC 1 cut(s) 334
XceI RCATGY 1 cut(s) 246
XmnI GAANNNNTTC 1 cut(s) 209
XspI CTAG 1 cut(s) 478
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.