Rmu_sc0001010.1_g000063

Belongs to the GRAS family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001010.1
OG0000175
Physical Location & Seq
Reverse (-)
231402 .. 233125
1724 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001010.1_g000063.1.cds

Sequence Viewer

Length: 549 bp
atgtttgataacagttttcctcgtgaagatcagatgagattggggtttgagaaagagtttattgggcgtgaagttctgaatatagtagcttgtgagggctcagaaagaattgtgaggccagaaacatataagcagtggcaggttcggaacataagggctgggttcagacagctgccattggaccgtgaagtcatgaacaaaataaaggataaagtaaaaatggggtacagccctgattttgtggttgatgaagatggccactggatgcttctgggatggaagggcagaattatgtttggttccgcctgttgggcaccttctcaatttcttcatggtatcaaagctacaaagcatctgacgaagaagaatcttttgttcccgtctctccttctccttcattctatggctaccacagactcatcccttcccggtcctaatgttgctcattttctcaagctcactgaaaccaactatctcatttggcttcgacagaggtggacgatggctgcaaagggacaacggcagcggttgtctgagggtctccattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GRAS

Protein Analysis

182

Amino Acids

21.2

Weight (kDa)

9.69

Isoelectric Point (pI)

44.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000175)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G46600 AT3G46600 AT3G46600 AT5G59450
fragaria_vesca FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36691 FvH4_3g36700 FvH4_3g36711 FvH4_3g36711 FvH4_3g36720 FvH4_3g36730 FvH4_3g36760
malus_domestica MD03G1088900.v1.1 MD03G1089100.v1.1 MD03G1089200.v1.1 MD03G1089300.v1.1 MD11G1097900.v1.1 MD11G1098000.v1.1 MD11G1098100.v1.1 MD11G1098400.v1.1 MD11G1098900.v1.1
prunus_persica Prupe.6G073300_v2.0.a1 Prupe.6G073400_v2.0.a1 Prupe.6G073400_v2.0.a1 Prupe.6G073500_v2.0.a1 Prupe.6G073600_v2.0.a1 Prupe.6G073700_v2.0.a1 Prupe.6G073800_v2.0.a1 Prupe.I004400_v2.0.a1 Prupe.I004500_v2.0.a1
pyrus_communis pycom03g07050 pycom03g07060 pycom03g07070 pycom03g07110 pycom04g11870 pycom11g08270 pycom11g08280
rosa_chinensis RchiOBHm_Chr5g0065591 RchiOBHm_Chr5g0065601 RchiOBHm_Chr5g0065621 RchiOBHm_Chr5g0065631 RchiOBHm_Chr5g0065641 RchiOBHm_Chr5g0065651 RchiOBHm_Chr5g0065671 RchiOBHm_Chr5g0065721 RchiOBHm_Chr5g0065731 RchiOBHm_Chr5g0065751 RchiOBHm_Chr5g0065791 RchiOBHm_Chr5g0065811
rosa_laevigata RLG00000035800 RLG00000035801 RLG00000035803 RLG00000035804 RLG00000035805 RLG00000035806 RLG00000035807 RLG00000035808 RLG00000035809 RLG00000035810 RLG00000035813 RLG00000035814 RLG00000035816
rosa_multiflora Rmu_co8233911.1_g000001 Rmu_co8258053.1_g000001 Rmu_co8279117.1_g000001 Rmu_sc0000235.1_g000004 Rmu_sc0000235.1_g000024 Rmu_sc0000235.1_g000060 Rmu_sc0000235.1_g000074 Rmu_sc0001010.1_g000001 Rmu_sc0001010.1_g000015 Rmu_sc0001010.1_g000030 Rmu_sc0001010.1_g000037 Rmu_sc0001010.1_g000043 Rmu_sc0001010.1_g000063 Rmu_sc0001010.1_g000066 Rmu_sc0003636.1_g000008 Rmu_sc0003636.1_g000011 Rmu_sc0003636.1_g000012 Rmu_sc0003636.1_g000015 Rmu_sc0005971.1_g000017 Rmu_sc0008231.1_g000001 Rmu_sc0032155.1_g000001
rosa_roxburghii Rroxscaffold_1G00015360 Rroxscaffold_1G00015390 Rroxscaffold_1G00015410 Rroxscaffold_1G00015430 Rroxscaffold_1G00015490 Rroxscaffold_1G00015520 Rroxscaffold_1G00015530 Rroxscaffold_1G00015550 Rroxscaffold_1G00015560 Rroxscaffold_1G00015580 Rroxscaffold_1G00015600 Rroxscaffold_1G00015610 Rroxscaffold_1G00015620 Rroxscaffold_1G00015630
rosa_rugosa Rorug05G0372800 Rorug05G0372800 Rorug05G0372800 Rorug05G0372800 Rorug05G0373100 Rorug05G0373100 Rorug05G0373200 Rorug05G0373300 Rorug05G0373400 Rorug05G0373500 Rorug05G0373600 Rorug05G0373700 Rorug05G0378700
rosa_samantha Rh5AG430900 Rh5AG431000 Rh5AG431100 Rh5AG431200 Rh5AG431700 Rh5AG431800 Rh5AG431900 Rh5AG432200 Rh5AG432500 Rh5BG445200 Rh5BG446000 Rh5BG447100 Rh5BG447200 Rh5BG447400 Rh5BG447800 Rh5BG447900 Rh5BG448000 Rh5BG448100 Rh5BG448300 Rh5BG448400 Rh5BG448500 Rh5BG448600 Rh5CG467400 Rh5CG468000 Rh5CG469000 Rh5CG469100 Rh5CG469400 Rh5CG469700 Rh5CG469900 Rh5CG470100 Rh5CG470200 Rh5CG470600 Rh5CG470700 Rh5CG470800 Rh5DG459500 Rh5DG459700 Rh5DG459800 Rh5DG460000 Rh5DG460900 Rh5DG461300 Rh5DG461500 Rh5DG461900 Rh5DG462000 Rh5DG462100
rosa_wichuraiana Rw5G040420 Rw5G040430 Rw5G040440 Rw5G040470 Rw5G040480 Rw5G040500 Rw5G040510 Rw5G040530 Rw5G040550 Rw5G040560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 188
Acc36I ACCTGC 1 cut(s) 130
AccB1I GGYRCC 1 cut(s) 313
AciI CCGC 2 cut(s) 303, 526
AcoI YGGCCR 1 cut(s) 256
AfaI GTAC 1 cut(s) 227
AfiI CCNNNNNNNGG 1 cut(s) 309
AluBI AGCT 4 cut(s) 89, 172, 344, 457
AluI AGCT 4 cut(s) 89, 172, 344, 457
Alw26I GTCTC 2 cut(s) 387, 545
AoxI GGCC 2 cut(s) 116, 256
ApeKI GCWGC 3 cut(s) 172, 506, 523
AspS9I GGNCC 2 cut(s) 181, 431
AsuC2I CCSGG 1 cut(s) 429
AvaII GGWCC 2 cut(s) 181, 431
BaeGI GKGCMC 1 cut(s) 316
BalI TGGCCA 1 cut(s) 258
BanI GGYRCC 1 cut(s) 313
BanII GRGCYC 1 cut(s) 101
BauI CACGAG 1 cut(s) 21
BbvI GCAGC 3 cut(s) 159, 493, 535
BccI CCATC 3 cut(s) 248, 270, 496
BceAI ACGGC 1 cut(s) 536
BcnI CCSGG 1 cut(s) 429
BcoDI GTCTC 2 cut(s) 387, 545
BfuAI ACCTGC 1 cut(s) 130
BglI GCCNNNNNGGC 1 cut(s) 311
BisI GCNGC 3 cut(s) 173, 507, 524
BlsI GCNGC 3 cut(s) 174, 508, 525
Bme1390I CCNGG 1 cut(s) 429
Bme18I GGWCC 2 cut(s) 181, 431
BmgT120I GGNCC 2 cut(s) 181, 431
BmiI GGNNCC 2 cut(s) 301, 315
BmrFI CCNGG 1 cut(s) 429
BmsI GCATC 2 cut(s) 255, 361
BpuEI CTTGAG 1 cut(s) 437
BpuMI CCSGG 1 cut(s) 429
BsaI GGTCTC 1 cut(s) 545
Bsc4I CCNNNNNNNGG 1 cut(s) 309
Bse1I ACTGG 1 cut(s) 266
BseGI GGATG 3 cut(s) 270, 281, 419
BseLI CCNNNNNNNGG 1 cut(s) 309
BseMII CTCAG 2 cut(s) 114, 525
BseNI ACTGG 1 cut(s) 266
BseSI GKGCMC 1 cut(s) 316
BseXI GCAGC 3 cut(s) 159, 493, 535
BseYI CCCAGC 1 cut(s) 158
BshFI GGCC 2 cut(s) 118, 258
BshNI GGYRCC 1 cut(s) 313
BsiSI CCGG 1 cut(s) 429
BslFI GGGAC 1 cut(s) 528
BslI CCNNNNNNNGG 1 cut(s) 309
BsmAI GTCTC 2 cut(s) 387, 545
BsmBI CGTCTC 1 cut(s) 387
BsmFI GGGAC 1 cut(s) 528
BsnI GGCC 2 cut(s) 118, 258
Bso31I GGTCTC 1 cut(s) 545
Bsp1286I GDGCHC 2 cut(s) 101, 316
Bsp143I GATC 1 cut(s) 28
BspACI CCGC 2 cut(s) 303, 526
BspANI GGCC 2 cut(s) 118, 258
BspCNI CTCAG 2 cut(s) 113, 526
BspHI TCATGA 1 cut(s) 192
BspLI GGNNCC 2 cut(s) 301, 315
BspMI ACCTGC 1 cut(s) 130
BspT107I GGYRCC 1 cut(s) 313
BspTNI GGTCTC 1 cut(s) 545
BsrI ACTGG 1 cut(s) 266
BssMI GATC 1 cut(s) 28
BssSI CACGAG 1 cut(s) 21
Bst2BI CACGAG 1 cut(s) 21
Bst4CI ACNGT 2 cut(s) 14, 185
BstDEI CTNAG 2 cut(s) 100, 534
BstF5I GGATG 3 cut(s) 270, 281, 419
BstKTI GATC 1 cut(s) 31
BstMAI GTCTC 2 cut(s) 387, 545
BstMBI GATC 1 cut(s) 28
BstMWI GCNNNNNNNGC 1 cut(s) 311
BstSCI CCNGG 1 cut(s) 427
BstSLI GKGCMC 1 cut(s) 316
BstV1I GCAGC 3 cut(s) 159, 493, 535
BsuRI GGCC 2 cut(s) 118, 258
BtsCI GGATG 3 cut(s) 270, 281, 419
BtsI GCAGTG 1 cut(s) 140
BtsIMutI CAGTG 3 cut(s) 140, 259, 459
BveI ACCTGC 1 cut(s) 130
CciI TCATGA 1 cut(s) 192
Cfr13I GGNCC 2 cut(s) 181, 431
Csp6I GTAC 1 cut(s) 226
CviAII CATG 2 cut(s) 193, 332
CviQI GTAC 1 cut(s) 226
DdeI CTNAG 2 cut(s) 100, 534
DpnI GATC 1 cut(s) 30
DpnII GATC 1 cut(s) 28
DrdI GACNNNNNNGTC 1 cut(s) 188
DseDI GACNNNNNNGTC 1 cut(s) 188
EaeI YGGCCR 1 cut(s) 256
EciI GGCGGA 1 cut(s) 292
Eco24I GRGCYC 1 cut(s) 101
Eco31I GGTCTC 1 cut(s) 545
Eco47I GGWCC 2 cut(s) 181, 431
EcoT38I GRGCYC 1 cut(s) 101
Esp3I CGTCTC 1 cut(s) 387
FaeI CATG 2 cut(s) 196, 335
FaiI YATR 8 cut(s) 83, 127, 129, 152, 194, 293, 333, 404
FaqI GGGAC 1 cut(s) 528
FatI CATG 2 cut(s) 192, 331
Fnu4HI GCNGC 3 cut(s) 173, 507, 524
FokI GGATG 3 cut(s) 277, 288, 406
FriOI GRGCYC 1 cut(s) 101
Fsp4HI GCNGC 3 cut(s) 173, 507, 524
GluI GCNGC 3 cut(s) 173, 507, 524
GsaI CCCAGC 1 cut(s) 162
HaeIII GGCC 2 cut(s) 118, 258
HapII CCGG 1 cut(s) 429
Hin1II CATG 2 cut(s) 196, 335
HinfI GANTC 2 cut(s) 367, 416
HpaII CCGG 1 cut(s) 429
Hpy166II GTNNAC 1 cut(s) 498
Hpy188I TCNGA 7 cut(s) 33, 78, 103, 147, 167, 357, 535
Hpy188III TCNNGA 2 cut(s) 23, 193
Hpy8I GTNNAC 1 cut(s) 498
HpyAV CCTTC 5 cut(s) 274, 327, 398, 404, 434
HpyCH4III ACNGT 2 cut(s) 14, 185
HpyCH4V TGCA 1 cut(s) 509
HpyF10VI GCNNNNNNNGC 1 cut(s) 311
HpyF3I CTNAG 2 cut(s) 100, 534
Hsp92II CATG 2 cut(s) 196, 335
Kzo9I GATC 1 cut(s) 28
LpnPI CCDG 8 cut(s) 125, 132, 144, 246, 247, 257, 319, 442
Lsp1109I GCAGC 3 cut(s) 159, 493, 535
LweI GCATC 2 cut(s) 255, 361
MalI GATC 1 cut(s) 30
MboI GATC 1 cut(s) 28
MboII GAAGA 5 cut(s) 38, 263, 320, 373, 376
MhlI GDGCHC 2 cut(s) 101, 316
MlsI TGGCCA 1 cut(s) 258
MluCI AATT 3 cut(s) 108, 288, 323
MluNI TGGCCA 1 cut(s) 258
MlyI GAGTC 1 cut(s) 410
MnlI CCTC 5 cut(s) 30, 88, 108, 486, 529
Mox20I TGGCCA 1 cut(s) 258
MscI TGGCCA 1 cut(s) 258
MseI TTAA 1 cut(s) 547
Msp20I TGGCCA 1 cut(s) 258
MspA1I CMGCKG 2 cut(s) 172, 526
MspI CCGG 1 cut(s) 429
MspR9I CCNGG 1 cut(s) 429
MwoI GCNNNNNNNGC 1 cut(s) 311
NciI CCSGG 1 cut(s) 429
NdeII GATC 1 cut(s) 28
NlaIII CATG 2 cut(s) 196, 335
NlaIV GGNNCC 2 cut(s) 301, 315
PagI TCATGA 1 cut(s) 192
PfeI GAWTC 1 cut(s) 367
PkrI GCNGC 3 cut(s) 174, 508, 525
PleI GAGTC 1 cut(s) 410
PpsI GAGTC 1 cut(s) 410
PspFI CCCAGC 1 cut(s) 158
PspN4I GGNNCC 2 cut(s) 301, 315
PspPI GGNCC 2 cut(s) 181, 431
PvuII CAGCTG 1 cut(s) 172
RsaI GTAC 1 cut(s) 227
RsaNI GTAC 1 cut(s) 226
SaqAI TTAA 1 cut(s) 547
SatI GCNGC 3 cut(s) 173, 507, 524
Sau3AI GATC 1 cut(s) 28
Sau96I GGNCC 2 cut(s) 181, 431
SchI GAGTC 1 cut(s) 410
ScrFI CCNGG 1 cut(s) 429
SduI GDGCHC 2 cut(s) 101, 316
SetI ASST 7 cut(s) 91, 144, 174, 319, 346, 459, 497
SfaNI GCATC 2 cut(s) 255, 361
SinI GGWCC 2 cut(s) 181, 431
SmlI CTYRAG 1 cut(s) 452
SmoI CTYRAG 1 cut(s) 452
Sse9I AATT 3 cut(s) 108, 288, 323
SsiI CCGC 2 cut(s) 303, 526
StyD4I CCNGG 1 cut(s) 427
TaaI ACNGT 2 cut(s) 14, 185
TaqI TCGA 1 cut(s) 487
TasI AATT 3 cut(s) 108, 288, 323
TfiI GAWTC 1 cut(s) 367
Tru1I TTAA 1 cut(s) 547
Tru9I TTAA 1 cut(s) 547
TscAI CASTG 3 cut(s) 140, 266, 466
TseI GCWGC 3 cut(s) 172, 506, 523
TspDTI ATGAA 4 cut(s) 209, 264, 320, 386
TspRI CASTG 3 cut(s) 140, 266, 466
VpaK11BI GGWCC 2 cut(s) 181, 431
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.