Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000175

Physical Location & Seq

Genomic Coordinates Forward (+)

74322972 .. 74325678

Gene Structure 2707 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG432500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2013 bp

ATGGATACCCTCTTTGATAGATTTTCTGGTCGCATAGAGGGACTTTATTTTGGCCATGCCCCAACTTCAATTACTTTCAATCCAAATCTTGCAGACGGGTGCAAAGTCACTCAGGAATCCACCAATACACTTATCCATCCAGCTAACTTAGAATATCCAAGTGATTTGAGTAAGTCTTTGAGCCCAGCTTCTGAGGAAGAAACTGTTGATGTTAGTTACTCCAACAATCCTGTTATCAAGTACATAAGTGATATTCTTCTGGAGGAAGACCTGGAGGACGAGAGCTGCATGCTGCAGGACTATTTGGCCATCCAAGCTGCTGAAAAATCTTTCTATGATGTCCTTAATCCGAATGATCCTCATTCACCCAACAAGGCTTCTCTTGGTGAATCGTTTTCAGATACTCTTTTGGTTTCAGATTCACTTTTTGAGAGGCAGAGTCTTGGAAATTTCGGAAATGTTGGGGAGGCAGACAAGTTCCTTCCTAATGGGGAATTCGATATCATTGAATATGAGAGGTACGAATTACTGCCTGCAGCACGTTCTCACCTGGTGAAAGGGAATCTGGCATCCGATAAAAAAAATGATGTAAATAACCCAACAAATGGTATGAAGGGAAAGAAAAATCATCGCAGAGAGGATGGAGATTATCCAGAGGAAGGGAGACGCAGCAAGCAGTCAGTTGTTTCTGCTGATGACTCTGAGCCTCAAGAAATGTTTGATAAGGTGTTACTCTGTCAAGCTGAGCATCATCATCGGAAGTGGGAATCTTGCAGGCCTCATTGCTGTATGAAAAGGGAGGAAACAGAGCAGTTGCAGCAAAACAGGCAGCCTAAAGGATCTAAAACAAATCGTTCAAAGCGACAAAATAAAGATGAGGAAGGAGTAGATTTGACCACCATGCTAAATCAATGTGCACAAGCCGTGGCAAGCTATGAACAAGGAACGGCGAGTGAACTACTGAAGAAGATAAGGCAGCACTCCTCCCCCCATGGACATGCAACTCAGAGATTAGCTCACTACTTTGCCAATGGCCTAGAGGCGCGGCTTACTGGTGTCGGAACCCCATCATTTTCACCTCTCTTTAGTAGGCAGACATCAGCCGCTGAATACTTACTAGCTTACCAGGTATATACTACTTCATGCCCTTCCAAGATGATGTCACAATTATTTGCCAACAGAACAATCATGAAGCTAGCAAAAAATGAAACAAGGCTTCACATTATTGATTTTGGTATTTCTTATGGTTTCCAATGGCCCTTCCTTATCCAACATCTCTCCGAGAGACCTAATGGACCTCCCAAGTTACACATCACAGGAATTGAGCTTCCGCAACCTGGTTTTCGACCTAGAGAAAGGGTTGAAGAGACCGGGCGTCGCCTAGCAAGGTATTGTGCAAAGTTCAATGTCCCGTTTGAGTACGATGTCATTGTTCAAAGATGGGAAACCATACAATGTGAGGATCTTAAAATTGACCGAAACGAACTGGTAGTGGTCAATTGTCTGAACCGGTTAAAGCACATACATGATGAGACGGTGATGGAGAACTCTCCGAGAGATACTGTCCTGAATTTGATCAAGAATATAGATCCCCACCTTTTCATTCATGGGATTGTCAATGGGACGTACAATACACCCTTCTTTGCCACACGGTTCAAAGAGGCACTCTTGCACTACTATGCCGTGTTTGATATGTATGAAGCAACTATTCCTCGTGAAGATGAACGGCGGATGATTATCGAGAGAGAAAAATGTGGTAGAGACATAATGAATATCGTAGCATGCGAGGGAGTGGAAAGGTTTGAAAGACCTGAGACATATAAGAAATGGCAGATCAGGAATGTGAGGGCTGGGTTGAAGCAGCTCCCGTTGGACCAGGAGGAGTTGAAGAAAGTGAAGAACTTGTATAAGGGTTATCATAATGATTTTAGAGTTGAAGAAGATGGGCAGTGGATATTGCAGGGATGGAAAGGAAGGATCCAACGGGCTCTTTCACTCTGGACTCCTGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAS

Protein Analysis

670

Amino Acids

77.06

Weight (kDa)

6.04

Isoelectric Point (pI)

51.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GRAS	PF03514	299 - 668	5.2e-115	GRAS domain family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000175)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46600 AT3G46600 AT3G46600 AT5G59450
fragaria_vesca	FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36691 FvH4_3g36700 FvH4_3g36711 FvH4_3g36711 FvH4_3g36720 FvH4_3g36730 FvH4_3g36760
malus_domestica	MD03G1088900.v1.1 MD03G1089100.v1.1 MD03G1089200.v1.1 MD03G1089300.v1.1 MD11G1097900.v1.1 MD11G1098000.v1.1 MD11G1098100.v1.1 MD11G1098400.v1.1 MD11G1098900.v1.1
prunus_persica	Prupe.6G073300_v2.0.a1 Prupe.6G073400_v2.0.a1 Prupe.6G073400_v2.0.a1 Prupe.6G073500_v2.0.a1 Prupe.6G073600_v2.0.a1 Prupe.6G073700_v2.0.a1 Prupe.6G073800_v2.0.a1 Prupe.I004400_v2.0.a1 Prupe.I004500_v2.0.a1
pyrus_communis	pycom03g07050 pycom03g07060 pycom03g07070 pycom03g07110 pycom04g11870 pycom11g08270 pycom11g08280
rosa_chinensis	RchiOBHm_Chr5g0065591 RchiOBHm_Chr5g0065601 RchiOBHm_Chr5g0065621 RchiOBHm_Chr5g0065631 RchiOBHm_Chr5g0065641 RchiOBHm_Chr5g0065651 RchiOBHm_Chr5g0065671 RchiOBHm_Chr5g0065721 RchiOBHm_Chr5g0065731 RchiOBHm_Chr5g0065751 RchiOBHm_Chr5g0065791 RchiOBHm_Chr5g0065811
rosa_laevigata	RLG00000035800 RLG00000035801 RLG00000035803 RLG00000035804 RLG00000035805 RLG00000035806 RLG00000035807 RLG00000035808 RLG00000035809 RLG00000035810 RLG00000035813 RLG00000035814 RLG00000035816
rosa_multiflora	Rmu_co8233911.1_g000001 Rmu_co8258053.1_g000001 Rmu_co8279117.1_g000001 Rmu_sc0000235.1_g000004 Rmu_sc0000235.1_g000024 Rmu_sc0000235.1_g000060 Rmu_sc0000235.1_g000074 Rmu_sc0001010.1_g000001 Rmu_sc0001010.1_g000015 Rmu_sc0001010.1_g000030 Rmu_sc0001010.1_g000037 Rmu_sc0001010.1_g000043 Rmu_sc0001010.1_g000063 Rmu_sc0001010.1_g000066 Rmu_sc0003636.1_g000008 Rmu_sc0003636.1_g000011 Rmu_sc0003636.1_g000012 Rmu_sc0003636.1_g000015 Rmu_sc0005971.1_g000017 Rmu_sc0008231.1_g000001 Rmu_sc0032155.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015360 Rroxscaffold_1G00015390 Rroxscaffold_1G00015410 Rroxscaffold_1G00015430 Rroxscaffold_1G00015490 Rroxscaffold_1G00015520 Rroxscaffold_1G00015530 Rroxscaffold_1G00015550 Rroxscaffold_1G00015560 Rroxscaffold_1G00015580 Rroxscaffold_1G00015600 Rroxscaffold_1G00015610 Rroxscaffold_1G00015620 Rroxscaffold_1G00015630
rosa_rugosa	Rorug05G0372800 Rorug05G0372800 Rorug05G0372800 Rorug05G0372800 Rorug05G0373100 Rorug05G0373100 Rorug05G0373200 Rorug05G0373300 Rorug05G0373400 Rorug05G0373500 Rorug05G0373600 Rorug05G0373700 Rorug05G0378700
rosa_samantha	Rh5AG430900 Rh5AG431000 Rh5AG431100 Rh5AG431200 Rh5AG431700 Rh5AG431800 Rh5AG431900 Rh5AG432200 Rh5AG432500 Rh5BG445200 Rh5BG446000 Rh5BG447100 Rh5BG447200 Rh5BG447400 Rh5BG447800 Rh5BG447900 Rh5BG448000 Rh5BG448100 Rh5BG448300 Rh5BG448400 Rh5BG448500 Rh5BG448600 Rh5CG467400 Rh5CG468000 Rh5CG469000 Rh5CG469100 Rh5CG469400 Rh5CG469700 Rh5CG469900 Rh5CG470100 Rh5CG470200 Rh5CG470600 Rh5CG470700 Rh5CG470800 Rh5DG459500 Rh5DG459700 Rh5DG459800 Rh5DG460000 Rh5DG460900 Rh5DG461300 Rh5DG461500 Rh5DG461900 Rh5DG462000 Rh5DG462100
rosa_wichuraiana	Rw5G040420 Rw5G040430 Rw5G040440 Rw5G040470 Rw5G040480 Rw5G040500 Rw5G040510 Rw5G040530 Rw5G040550 Rw5G040560

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	605
AccII	CGCG	1 cut(s)	1045
AciI	CCGC	4 cut(s)	1045, 1104, 1331, 1729
AclWI	GGATC	6 cut(s)	350, 847, 1470, 1583, 1972, 1985
AcoI	YGGCCR	2 cut(s)	52, 306
AcsI	RAATTY	3 cut(s)	448, 494, 1570
AcuI	CTGAAG	1 cut(s)	983
AcyI	GRCGYC	1 cut(s)	1375
AdeI	CACNNNGTG	1 cut(s)	553
AfaI	GTAC	4 cut(s)	242, 521, 1421, 1628
AfiI	CCNNNNNNNGG	3 cut(s)	605, 659, 1337
AgeI	ACCGGT	1 cut(s)	1509
AhdI	GACNNNNNGTC	1 cut(s)	1374
AjnI	CCWGG	5 cut(s)	270, 549, 1125, 1336, 1875
Alw21I	GWGCWC	1 cut(s)	919
Alw26I	GTCTC	6 cut(s)	658, 1279, 1361, 1526, 1755, 1808
Alw44I	GTGCAC	1 cut(s)	915
AlwI	GGATC	6 cut(s)	350, 847, 1470, 1583, 1972, 1985
AlwNI	CAGNNNCTG	2 cut(s)	191, 1106
AoxI	GGCC	5 cut(s)	52, 306, 776, 1033, 1256
ApaLI	GTGCAC	1 cut(s)	915
ApeKI	GCWGC	9 cut(s)	285, 292, 317, 536, 669, 817, 829, 976, 1861
ApoI	RAATTY	3 cut(s)	448, 494, 1570
AsiGI	ACCGGT	1 cut(s)	1509
AspLEI	GCGC	1 cut(s)	1045
AspS9I	GGNCC	3 cut(s)	1257, 1295, 1873
AsuC2I	CCSGG	1 cut(s)	1372
AsuHPI	GGTGA	6 cut(s)	357, 398, 539, 565, 1068, 1549
AsuNHI	GCTAGC	1 cut(s)	1195
AvaII	GGWCC	2 cut(s)	1295, 1873
BaeGI	GKGCMC	1 cut(s)	919
BalI	TGGCCA	2 cut(s)	54, 308
BamHI	GGATCC	1 cut(s)	1977
BanII	GRGCYC	2 cut(s)	185, 1990
BauI	CACGAG	1 cut(s)	1713
BbsI	GAAGAC	1 cut(s)	273
Bbv12I	GWGCWC	1 cut(s)	919
BbvI	GCAGC	9 cut(s)	272, 279, 304, 548, 681, 829, 841, 988, 1873
BccI	CCATC	8 cut(s)	144, 317, 635, 1075, 1434, 1534, 1937, 1959
BceAI	ACGGC	4 cut(s)	908, 963, 1667, 1742
BcgI	CGANNNNNNTGC	2 cut(s)	737, 771
BciT130I	CCWGG	5 cut(s)	272, 551, 1127, 1338, 1877
BclI	TGATCA	1 cut(s)	1575
BcnI	CCSGG	1 cut(s)	1372
BcoDI	GTCTC	6 cut(s)	658, 1279, 1361, 1526, 1755, 1808
BfaI	CTAG	6 cut(s)	1037, 1118, 1196, 1350, 1382, 2011
BfmI	CTRYAG	2 cut(s)	293, 534
BlpI	GCTNAGC	1 cut(s)	744
Bme1390I	CCNGG	6 cut(s)	272, 551, 1127, 1338, 1372, 1877
Bme18I	GGWCC	2 cut(s)	1295, 1873
BmeRI	GACNNNNNGTC	1 cut(s)	1374
BmgT120I	GGNCC	3 cut(s)	1257, 1295, 1873
BmiI	GGNNCC	2 cut(s)	1063, 1979
BmrFI	CCNGG	6 cut(s)	272, 551, 1127, 1338, 1372, 1877
BmsI	GCATC	2 cut(s)	578, 757
BmtI	GCTAGC	1 cut(s)	1199
BpiI	GAAGAC	1 cut(s)	273
BplI	GAGNNNNNCTC	2 cut(s)	1000, 1032
BpmI	CTGGAG	2 cut(s)	281, 293
Bpu1102I	GCTNAGC	1 cut(s)	744
BpuEI	CTTGAG	1 cut(s)	693
BpuMI	CCSGG	1 cut(s)	1372
BsaBI	GATNNNNATC	1 cut(s)	1736
BsaHI	GRCGYC	1 cut(s)	1375
BsaI	GGTCTC	2 cut(s)	1279, 1361
BsaJI	CCNNGG	2 cut(s)	924, 991
BsaWI	WCCGGW	1 cut(s)	1509
Bsc4I	CCNNNNNNNGG	3 cut(s)	605, 659, 1337
Bse118I	RCCGGY	1 cut(s)	1509
Bse1I	ACTGG	2 cut(s)	1057, 1491
Bse3DI	GCAATG	1 cut(s)	781
Bse8I	GATNNNNATC	1 cut(s)	1736
BseBI	CCWGG	5 cut(s)	272, 551, 1127, 1338, 1877
BseDI	CCNNGG	2 cut(s)	924, 991
BseGI	GGATG	6 cut(s)	136, 309, 569, 646, 1737, 1970
BseJI	GATNNNNATC	1 cut(s)	1736
BseLI	CCNNNNNNNGG	3 cut(s)	605, 659, 1337
BseMI	GCAATG	1 cut(s)	781
BseMII	CTCAG	6 cut(s)	125, 183, 693, 735, 1019, 1803
BseNI	ACTGG	2 cut(s)	1057, 1491
BseRI	GAGGAG	2 cut(s)	973, 1895
BseSI	GKGCMC	1 cut(s)	919
BseXI	GCAGC	9 cut(s)	272, 279, 304, 548, 681, 829, 841, 988, 1873
BseYI	CCCAGC	2 cut(s)	184, 1850
Bsh1236I	CGCG	1 cut(s)	1045
BshFI	GGCC	5 cut(s)	54, 308, 778, 1035, 1258
BshTI	ACCGGT	1 cut(s)	1509
BsiHKAI	GWGCWC	1 cut(s)	919
BsiSI	CCGG	2 cut(s)	1371, 1510
BslFI	GGGAC	3 cut(s)	54, 1394, 1636
BslI	CCNNNNNNNGG	3 cut(s)	605, 659, 1337
BsmAI	GTCTC	6 cut(s)	658, 1279, 1361, 1526, 1755, 1808
BsmBI	CGTCTC	2 cut(s)	658, 1526
BsmFI	GGGAC	3 cut(s)	54, 1394, 1636
BsnI	GGCC	5 cut(s)	54, 308, 778, 1035, 1258
Bso31I	GGTCTC	2 cut(s)	1279, 1361
Bsp1286I	GDGCHC	3 cut(s)	185, 919, 1990
Bsp143I	GATC	7 cut(s)	355, 839, 1462, 1575, 1588, 1833, 1977
Bsp1720I	GCTNAGC	1 cut(s)	744
Bsp19I	CCATGG	1 cut(s)	991
BspACI	CCGC	4 cut(s)	1045, 1104, 1331, 1729
BspANI	GGCC	5 cut(s)	54, 308, 778, 1035, 1258
BspCNI	CTCAG	6 cut(s)	124, 184, 694, 736, 1018, 1804
BspFNI	CGCG	1 cut(s)	1045
BspHI	TCATGA	1 cut(s)	1188
BspLI	GGNNCC	2 cut(s)	1063, 1979
BspMAI	CTGCAG	2 cut(s)	297, 538
BspOI	GCTAGC	1 cut(s)	1199
BspPI	GGATC	6 cut(s)	350, 847, 1470, 1583, 1972, 1985
BspTNI	GGTCTC	2 cut(s)	1279, 1361
BsrDI	GCAATG	1 cut(s)	781
BsrFI	RCCGGY	1 cut(s)	1509
BsrI	ACTGG	2 cut(s)	1057, 1491
BssAI	RCCGGY	1 cut(s)	1509
BssECI	CCNNGG	2 cut(s)	924, 991
BssMI	GATC	7 cut(s)	355, 839, 1462, 1575, 1588, 1833, 1977
BssNI	GRCGYC	1 cut(s)	1375
BssSI	CACGAG	1 cut(s)	1713
BssT1I	CCWWGG	1 cut(s)	991
Bst2BI	CACGAG	1 cut(s)	1713
Bst2UI	CCWGG	5 cut(s)	272, 551, 1127, 1338, 1877
Bst4CI	ACNGT	4 cut(s)	205, 1537, 1564, 1653
Bst6I	CTCTTC	1 cut(s)	1359
BstACI	GRCGYC	1 cut(s)	1375
BstC8I	GCNNGC	7 cut(s)	290, 534, 674, 776, 931, 1197, 1783
BstDEI	CTNAG	7 cut(s)	111, 148, 192, 702, 744, 1005, 1812
BstDSI	CCRYGG	2 cut(s)	924, 991
BstF5I	GGATG	6 cut(s)	136, 309, 569, 646, 1737, 1970
BstFNI	CGCG	1 cut(s)	1045
BstHHI	GCGC	1 cut(s)	1045
BstKTI	GATC	7 cut(s)	358, 842, 1465, 1578, 1591, 1836, 1980
BstMAI	GTCTC	6 cut(s)	658, 1279, 1361, 1526, 1755, 1808
BstMBI	GATC	7 cut(s)	355, 839, 1462, 1575, 1588, 1833, 1977
BstMWI	GCNNNNNNNGC	3 cut(s)	314, 817, 826
BstNI	CCWGG	5 cut(s)	272, 551, 1127, 1338, 1877
BstNSI	RCATGY	3 cut(s)	292, 1001, 1785
BstSCI	CCNGG	6 cut(s)	270, 549, 1125, 1336, 1370, 1875
BstSFI	CTRYAG	2 cut(s)	293, 534
BstSLI	GKGCMC	1 cut(s)	919
BstUI	CGCG	1 cut(s)	1045
BstV1I	GCAGC	9 cut(s)	272, 279, 304, 548, 681, 829, 841, 988, 1873
BstV2I	GAAGAC	1 cut(s)	273
BstX2I	RGATCY	4 cut(s)	839, 1462, 1588, 1977
BstYI	RGATCY	4 cut(s)	839, 1462, 1588, 1977
BsuRI	GGCC	5 cut(s)	54, 308, 778, 1035, 1258
BtgI	CCRYGG	2 cut(s)	924, 991
BtgZI	GCGATG	1 cut(s)	614
BtsCI	GGATG	6 cut(s)	136, 309, 569, 646, 1737, 1970
BtsI	GCAGTG	1 cut(s)	1955
BtsIMutI	CAGTG	1 cut(s)	1955
Cac8I	GCNNGC	7 cut(s)	290, 534, 674, 776, 931, 1197, 1783
CaiI	CAGNNNCTG	2 cut(s)	191, 1106
CciI	TCATGA	1 cut(s)	1188
CfoI	GCGC	1 cut(s)	1045
Cfr10I	RCCGGY	1 cut(s)	1509
Cfr13I	GGNCC	3 cut(s)	1257, 1295, 1873
CseI	GACGC	2 cut(s)	675, 1364
CsiI	ACCWGGT	3 cut(s)	549, 1125, 1336
Csp6I	GTAC	4 cut(s)	241, 520, 1420, 1627
CspAI	ACCGGT	1 cut(s)	1509
CviQI	GTAC	4 cut(s)	241, 520, 1420, 1627
DdeI	CTNAG	7 cut(s)	111, 148, 192, 702, 744, 1005, 1812
DpnI	GATC	7 cut(s)	357, 841, 1464, 1577, 1590, 1835, 1979
DpnII	GATC	7 cut(s)	355, 839, 1462, 1575, 1588, 1833, 1977
DraIII	CACNNNGTG	1 cut(s)	553
DriI	GACNNNNNGTC	1 cut(s)	1374
EaeI	YGGCCR	2 cut(s)	52, 306
Eam1104I	CTCTTC	1 cut(s)	1359
Eam1105I	GACNNNNNGTC	1 cut(s)	1374
EarI	CTCTTC	1 cut(s)	1359
EciI	GGCGGA	1 cut(s)	1744
Eco130I	CCWWGG	1 cut(s)	991
Eco147I	AGGCCT	1 cut(s)	778
Eco24I	GRGCYC	2 cut(s)	185, 1990
Eco31I	GGTCTC	2 cut(s)	1279, 1361
Eco32I	GATATC	1 cut(s)	502
Eco47I	GGWCC	2 cut(s)	1295, 1873
Eco57I	CTGAAG	1 cut(s)	983
EcoRI	GAATTC	1 cut(s)	494
EcoRII	CCWGG	5 cut(s)	270, 549, 1125, 1336, 1875
EcoRV	GATATC	1 cut(s)	502
EcoT14I	CCWWGG	1 cut(s)	991
EcoT38I	GRGCYC	2 cut(s)	185, 1990
ErhI	CCWWGG	1 cut(s)	991
Esp3I	CGTCTC	2 cut(s)	658, 1526
FaqI	GGGAC	3 cut(s)	54, 1394, 1636
FbaI	TGATCA	1 cut(s)	1575
FokI	GGATG	6 cut(s)	123, 296, 556, 653, 1744, 1977
FriOI	GRGCYC	2 cut(s)	185, 1990
FspBI	CTAG	6 cut(s)	1037, 1118, 1196, 1350, 1382, 2011
GlaI	GCGC	1 cut(s)	1044
GsaI	CCCAGC	2 cut(s)	188, 1854
GsuI	CTGGAG	2 cut(s)	281, 293
HaeIII	GGCC	5 cut(s)	54, 308, 778, 1035, 1258
HapII	CCGG	2 cut(s)	1371, 1510
HgaI	GACGC	2 cut(s)	675, 1364
HhaI	GCGC	1 cut(s)	1045
Hin1I	GRCGYC	1 cut(s)	1375
Hin6I	GCGC	1 cut(s)	1043
HinP1I	GCGC	1 cut(s)	1043
HinfI	GANTC	8 cut(s)	116, 389, 419, 439, 562, 698, 767, 2002
HpaII	CCGG	2 cut(s)	1371, 1510
HphI	GGTGA	6 cut(s)	357, 398, 539, 565, 1068, 1549
Hpy166II	GTNNAC	2 cut(s)	917, 956
Hpy8I	GTNNAC	2 cut(s)	917, 956
Hpy99I	CGWCG	1 cut(s)	1380
HpyAV	CCTTC	8 cut(s)	491, 607, 653, 875, 1158, 1270, 1648, 1968
HpyCH4III	ACNGT	4 cut(s)	205, 1537, 1564, 1653
HpyCH4IV	ACGT	2 cut(s)	541, 1625
HpyF10VI	GCNNNNNNNGC	3 cut(s)	314, 817, 826
HpyF3I	CTNAG	7 cut(s)	111, 148, 192, 702, 744, 1005, 1812
HpySE526I	ACGT	2 cut(s)	541, 1625
Hsp92I	GRCGYC	1 cut(s)	1375
HspAI	GCGC	1 cut(s)	1043
Ksp22I	TGATCA	1 cut(s)	1575
Kzo9I	GATC	7 cut(s)	355, 839, 1462, 1575, 1588, 1833, 1977
LmnI	GCTCC	1 cut(s)	1869
Lsp1109I	GCAGC	9 cut(s)	272, 279, 304, 548, 681, 829, 841, 988, 1873
LweI	GCATC	2 cut(s)	578, 757
MabI	ACCWGGT	3 cut(s)	549, 1125, 1336
MaeI	CTAG	6 cut(s)	1037, 1118, 1196, 1350, 1382, 2011
MaeII	ACGT	2 cut(s)	541, 1625
MaeIII	GTNAC	5 cut(s)	106, 215, 729, 1161, 1305
MalI	GATC	7 cut(s)	357, 841, 1464, 1577, 1590, 1835, 1979
MboI	GATC	7 cut(s)	355, 839, 1462, 1575, 1588, 1833, 1977
MfeI	CAATTG	1 cut(s)	1498
MflI	RGATCY	4 cut(s)	839, 1462, 1588, 1977
MhlI	GDGCHC	3 cut(s)	185, 919, 1990
MlsI	TGGCCA	2 cut(s)	54, 308
MluCI	AATT	9 cut(s)	69, 448, 494, 524, 1166, 1320, 1470, 1498, 1570
MluNI	TGGCCA	2 cut(s)	54, 308
MlyI	GAGTC	3 cut(s)	448, 692, 1996
MmeI	TCCRAC	5 cut(s)	246, 1039, 1294, 1851, 2005
Mox20I	TGGCCA	2 cut(s)	54, 308
MscI	TGGCCA	2 cut(s)	54, 308
MseI	TTAA	3 cut(s)	345, 1467, 1514
MslI	CAYNNNNRTG	3 cut(s)	996, 1524, 1677
Msp20I	TGGCCA	2 cut(s)	54, 308
MspA1I	CMGCKG	1 cut(s)	1106
MspI	CCGG	2 cut(s)	1371, 1510
MspR9I	CCNGG	6 cut(s)	272, 551, 1127, 1338, 1372, 1877
MunI	CAATTG	1 cut(s)	1498
MvaI	CCWGG	5 cut(s)	272, 551, 1127, 1338, 1877
MvnI	CGCG	1 cut(s)	1045
MwoI	GCNNNNNNNGC	3 cut(s)	314, 817, 826
NciI	CCSGG	1 cut(s)	1372
NcoI	CCATGG	1 cut(s)	991
NdeII	GATC	7 cut(s)	355, 839, 1462, 1575, 1588, 1833, 1977
NheI	GCTAGC	1 cut(s)	1195
NlaIV	GGNNCC	2 cut(s)	1063, 1979
NmuCI	GTSAC	2 cut(s)	106, 1161
NspI	RCATGY	3 cut(s)	292, 1001, 1785
PaeI	GCATGC	2 cut(s)	292, 1785
PagI	TCATGA	1 cut(s)	1188
PceI	AGGCCT	1 cut(s)	778
PcsI	WCGNNNNNNNCGW	2 cut(s)	859, 1782
PfeI	GAWTC	5 cut(s)	116, 389, 419, 562, 767
PflMI	CCANNNNNTGG	1 cut(s)	605
PinAI	ACCGGT	1 cut(s)	1509
PleI	GAGTC	3 cut(s)	447, 692, 1996
PpsI	GAGTC	3 cut(s)	447, 692, 1996
Psp6I	CCWGG	5 cut(s)	270, 549, 1125, 1336, 1875
PspFI	CCCAGC	2 cut(s)	184, 1850
PspGI	CCWGG	5 cut(s)	270, 549, 1125, 1336, 1875
PspN4I	GGNNCC	2 cut(s)	1063, 1979
PspPI	GGNCC	3 cut(s)	1257, 1295, 1873
PstI	CTGCAG	2 cut(s)	297, 538
PstNI	CAGNNNCTG	2 cut(s)	191, 1106
PsuI	RGATCY	4 cut(s)	839, 1462, 1588, 1977
RsaI	GTAC	4 cut(s)	242, 521, 1421, 1628
RsaNI	GTAC	4 cut(s)	241, 520, 1420, 1627
RseI	CAYNNNNRTG	3 cut(s)	996, 1524, 1677
SaqAI	TTAA	3 cut(s)	345, 1467, 1514
Sau3AI	GATC	7 cut(s)	355, 839, 1462, 1575, 1588, 1833, 1977
Sau96I	GGNCC	3 cut(s)	1257, 1295, 1873
SchI	GAGTC	3 cut(s)	448, 692, 1996
ScrFI	CCNGG	6 cut(s)	272, 551, 1127, 1338, 1372, 1877
SduI	GDGCHC	3 cut(s)	185, 919, 1990
SexAI	ACCWGGT	3 cut(s)	549, 1125, 1336
SfaNI	GCATC	2 cut(s)	578, 757
SfcI	CTRYAG	2 cut(s)	293, 534
SinI	GGWCC	2 cut(s)	1295, 1873
SmiMI	CAYNNNNRTG	3 cut(s)	996, 1524, 1677
SmlI	CTYRAG	1 cut(s)	708
SmoI	CTYRAG	1 cut(s)	708
SphI	GCATGC	2 cut(s)	292, 1785
Sse9I	AATT	9 cut(s)	69, 448, 494, 524, 1166, 1320, 1470, 1498, 1570
SseBI	AGGCCT	1 cut(s)	778
SsiI	CCGC	4 cut(s)	1045, 1104, 1331, 1729
SspMI	CTAG	6 cut(s)	1037, 1118, 1196, 1350, 1382, 2011
StuI	AGGCCT	1 cut(s)	778
StyD4I	CCNGG	6 cut(s)	270, 549, 1125, 1336, 1370, 1875
StyI	CCWWGG	1 cut(s)	991
TaaI	ACNGT	4 cut(s)	205, 1537, 1564, 1653
TaiI	ACGT	2 cut(s)	544, 1628
TaqI	TCGA	3 cut(s)	498, 1345, 1740
TaqII	GACCGA	1 cut(s)	1491
TasI	AATT	9 cut(s)	69, 448, 494, 524, 1166, 1320, 1470, 1498, 1570
TatI	WGTACW	1 cut(s)	240
TauI	GCSGC	2 cut(s)	1048, 1106
TfiI	GAWTC	5 cut(s)	116, 389, 419, 562, 767
Tru1I	TTAA	3 cut(s)	345, 1467, 1514
Tru9I	TTAA	3 cut(s)	345, 1467, 1514
TscAI	CASTG	1 cut(s)	1955
TseFI	GTSAC	2 cut(s)	106, 1161
TseI	GCWGC	9 cut(s)	285, 292, 317, 536, 669, 817, 829, 976, 1861
Tsp45I	GTSAC	2 cut(s)	106, 1161
TspRI	CASTG	1 cut(s)	1955
Van91I	CCANNNNNTGG	1 cut(s)	605
VneI	GTGCAC	1 cut(s)	915
VpaK11BI	GGWCC	2 cut(s)	1295, 1873
XapI	RAATTY	3 cut(s)	448, 494, 1570
XceI	RCATGY	3 cut(s)	292, 1001, 1785
XspI	CTAG	6 cut(s)	1037, 1118, 1196, 1350, 1382, 2011

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.