Rh5AG432200

Belongs to the GRAS family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000175
Physical Location & Seq
Reverse (-)
74264908 .. 74267705
2798 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG432200.1

Sequence Viewer

Length: 1086 bp
ATGCCAACATCTCCAGATCAGAATATCATTTTTACTGAGTTTGATCAACACAATCTTGAAATTACTGATCCCAGTTCGTTTCTATCCAATCCAAACCCTCCTCCTCGTGATGATTCATCCCGGTCTTTGGGTGTGACCTCAGAGGCCTCCAGAGCTACTCCCCAGTATATAAGTGAGATGCTTATGGAGGAAGAGCTGGAGAACAGACCCTGCATGCTTCAGGACTGTTTGGCCCTCCAAGCTGCTGAGAAATCCTTGGAAGATGTCCTGGTTCAGCAATATCCTCCTTCGACTAATCCCATTCTTGCTTCTTCCATTCAGCAAAATGTTGAGAACTCTGATGATTTCATTAACCACAGCAGTAATAGCTCCACTGCTGCTAGAAACTGGGATGATAGTTCAGAGAAAGCAACAAGGCTTCACATAATTGATTTTGGTATTCTCTATGGCTACCAATGGCCTGGCCTTATCCAAAGTCTTGCGAATAGACCCTCTCGACCTCCCATGCTTCGCATTACTGGTATTGAATTTCCACAATCAGGATTTCGACCTTCAGAGAGTCTTGAAGAGACAGGGCACCTCCTAGCGAAATATTGCAAGAGATTCAATGTCCCATTTGAGTACAACTTCATAGCACAGGATTGGGAAACCATTCGATATCAAGATATCAAACTTGACAGAGATGAGTTGACTGTAGTGAACTGCTTGTGCAGATTAAGGAACGTACCTGAAGAAACAGAGATGAGGACTCCAAGGGATAGAGTTTTGAAGCTGATCAGGAGAATCAACCCAGATATTTATATCCTTCGACTGGTTAATGGAACCTATAATGCACCCTTCTTCAACATACGGTTCCGGGAGGCACTCTACCATTTCTCTTCCCTTTTTGATATGTTTGACGAGACTTTGCACAGAGAAGATCAACAGAGTCTGCTCTACAAACAAGAGATATTAGGTAGAGATATTATCAATGTGATAGCATGTGAGGGTTCCAGGAGGTTGAAAGGCCTGAAACATACAAGCAGTGGCAGATTAGAAATACCAGAGCTGGGTTCAAGCAGTTACCATCAAACCAGGAGATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GRAS

Protein Analysis

361

Amino Acids

41.71

Weight (kDa)

5.25

Isoelectric Point (pI)

65.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRAS PF03514 131 - 336 3.2e-63 GRAS domain family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000175)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G46600 AT3G46600 AT3G46600 AT5G59450
fragaria_vesca FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36691 FvH4_3g36700 FvH4_3g36711 FvH4_3g36711 FvH4_3g36720 FvH4_3g36730 FvH4_3g36760
malus_domestica MD03G1088900.v1.1 MD03G1089100.v1.1 MD03G1089200.v1.1 MD03G1089300.v1.1 MD11G1097900.v1.1 MD11G1098000.v1.1 MD11G1098100.v1.1 MD11G1098400.v1.1 MD11G1098900.v1.1
prunus_persica Prupe.6G073300_v2.0.a1 Prupe.6G073400_v2.0.a1 Prupe.6G073400_v2.0.a1 Prupe.6G073500_v2.0.a1 Prupe.6G073600_v2.0.a1 Prupe.6G073700_v2.0.a1 Prupe.6G073800_v2.0.a1 Prupe.I004400_v2.0.a1 Prupe.I004500_v2.0.a1
pyrus_communis pycom03g07050 pycom03g07060 pycom03g07070 pycom03g07110 pycom04g11870 pycom11g08270 pycom11g08280
rosa_chinensis RchiOBHm_Chr5g0065591 RchiOBHm_Chr5g0065601 RchiOBHm_Chr5g0065621 RchiOBHm_Chr5g0065631 RchiOBHm_Chr5g0065641 RchiOBHm_Chr5g0065651 RchiOBHm_Chr5g0065671 RchiOBHm_Chr5g0065721 RchiOBHm_Chr5g0065731 RchiOBHm_Chr5g0065751 RchiOBHm_Chr5g0065791 RchiOBHm_Chr5g0065811
rosa_laevigata RLG00000035800 RLG00000035801 RLG00000035803 RLG00000035804 RLG00000035805 RLG00000035806 RLG00000035807 RLG00000035808 RLG00000035809 RLG00000035810 RLG00000035813 RLG00000035814 RLG00000035816
rosa_multiflora Rmu_co8233911.1_g000001 Rmu_co8258053.1_g000001 Rmu_co8279117.1_g000001 Rmu_sc0000235.1_g000004 Rmu_sc0000235.1_g000024 Rmu_sc0000235.1_g000060 Rmu_sc0000235.1_g000074 Rmu_sc0001010.1_g000001 Rmu_sc0001010.1_g000015 Rmu_sc0001010.1_g000030 Rmu_sc0001010.1_g000037 Rmu_sc0001010.1_g000043 Rmu_sc0001010.1_g000063 Rmu_sc0001010.1_g000066 Rmu_sc0003636.1_g000008 Rmu_sc0003636.1_g000011 Rmu_sc0003636.1_g000012 Rmu_sc0003636.1_g000015 Rmu_sc0005971.1_g000017 Rmu_sc0008231.1_g000001 Rmu_sc0032155.1_g000001
rosa_roxburghii Rroxscaffold_1G00015360 Rroxscaffold_1G00015390 Rroxscaffold_1G00015410 Rroxscaffold_1G00015430 Rroxscaffold_1G00015490 Rroxscaffold_1G00015520 Rroxscaffold_1G00015530 Rroxscaffold_1G00015550 Rroxscaffold_1G00015560 Rroxscaffold_1G00015580 Rroxscaffold_1G00015600 Rroxscaffold_1G00015610 Rroxscaffold_1G00015620 Rroxscaffold_1G00015630
rosa_rugosa Rorug05G0372800 Rorug05G0372800 Rorug05G0372800 Rorug05G0372800 Rorug05G0373100 Rorug05G0373100 Rorug05G0373200 Rorug05G0373300 Rorug05G0373400 Rorug05G0373500 Rorug05G0373600 Rorug05G0373700 Rorug05G0378700
rosa_samantha Rh5AG430900 Rh5AG431000 Rh5AG431100 Rh5AG431200 Rh5AG431700 Rh5AG431800 Rh5AG431900 Rh5AG432200 Rh5AG432500 Rh5BG445200 Rh5BG446000 Rh5BG447100 Rh5BG447200 Rh5BG447400 Rh5BG447800 Rh5BG447900 Rh5BG448000 Rh5BG448100 Rh5BG448300 Rh5BG448400 Rh5BG448500 Rh5BG448600 Rh5CG467400 Rh5CG468000 Rh5CG469000 Rh5CG469100 Rh5CG469400 Rh5CG469700 Rh5CG469900 Rh5CG470100 Rh5CG470200 Rh5CG470600 Rh5CG470700 Rh5CG470800 Rh5DG459500 Rh5DG459700 Rh5DG459800 Rh5DG460000 Rh5DG460900 Rh5DG461300 Rh5DG461500 Rh5DG461900 Rh5DG462000 Rh5DG462100
rosa_wichuraiana Rw5G040420 Rw5G040430 Rw5G040440 Rw5G040470 Rw5G040480 Rw5G040500 Rw5G040510 Rw5G040530 Rw5G040550 Rw5G040560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 576
AclWI GGATC 1 cut(s) 62
AcsI RAATTY 1 cut(s) 527
AcuI CTGAAG 3 cut(s) 203, 537, 750
AfaI GTAC 2 cut(s) 623, 726
AfiI CCNNNNNNNGG 4 cut(s) 127, 539, 811, 1049
AgsI TTSAA 8 cut(s) 59, 527, 566, 607, 769, 844, 1003, 1056
AjnI CCWGG 4 cut(s) 267, 460, 992, 1073
AluBI AGCT 6 cut(s) 155, 196, 242, 369, 772, 1048
AluI AGCT 6 cut(s) 155, 196, 242, 369, 772, 1048
Alw26I GTCTC 2 cut(s) 563, 896
AlwI GGATC 1 cut(s) 62
AlwNI CAGNNNCTG 2 cut(s) 210, 931
AoxI GGCC 5 cut(s) 144, 231, 458, 463, 1006
ApeKI GCWGC 2 cut(s) 242, 377
ApoI RAATTY 1 cut(s) 527
Asp700I GAANNNNTTC 1 cut(s) 651
AspS9I GGNCC 1 cut(s) 232
AsuC2I CCSGG 2 cut(s) 121, 857
BaeGI GKGCMC 1 cut(s) 579
BanI GGYRCC 1 cut(s) 576
BauI CACGAG 1 cut(s) 105
BbvI GCAGC 2 cut(s) 229, 364
BccI CCATC 1 cut(s) 1074
BciT130I CCWGG 4 cut(s) 269, 462, 994, 1075
BclI TGATCA 2 cut(s) 43, 774
BcnI CCSGG 2 cut(s) 121, 857
BcoDI GTCTC 2 cut(s) 563, 896
BfaI CTAG 2 cut(s) 381, 584
BfmI CTRYAG 1 cut(s) 693
BisI GCNGC 2 cut(s) 243, 378
BlsI GCNGC 2 cut(s) 244, 379
Bme1390I CCNGG 6 cut(s) 121, 269, 462, 857, 994, 1075
BmgT120I GGNCC 1 cut(s) 232
BmiI GGNNCC 4 cut(s) 578, 823, 854, 991
BmrFI CCNGG 6 cut(s) 121, 269, 462, 857, 994, 1075
BmrI ACTGGG 3 cut(s) 66, 157, 397
BmsI GCATC 1 cut(s) 168
BmuI ACTGGG 3 cut(s) 66, 157, 397
BpmI CTGGAG 2 cut(s) 133, 218
BpuMI CCSGG 2 cut(s) 121, 857
BsaJI CCNNGG 2 cut(s) 255, 752
Bsc4I CCNNNNNNNGG 4 cut(s) 127, 539, 811, 1049
Bse1I ACTGG 5 cut(s) 72, 163, 392, 523, 816
BseBI CCWGG 4 cut(s) 269, 462, 994, 1075
BseDI CCNNGG 2 cut(s) 255, 752
BseGI GGATG 2 cut(s) 116, 397
BseLI CCNNNNNNNGG 4 cut(s) 127, 539, 811, 1049
BseMII CTCAG 3 cut(s) 27, 153, 237
BseNI ACTGG 5 cut(s) 72, 163, 392, 523, 816
BseRI GAGGAG 2 cut(s) 90, 93
BseSI GKGCMC 1 cut(s) 579
BseXI GCAGC 2 cut(s) 229, 364
BseYI CCCAGC 1 cut(s) 1048
BsgI GTGCAG 1 cut(s) 730
BshFI GGCC 5 cut(s) 146, 233, 460, 465, 1008
BshNI GGYRCC 1 cut(s) 576
BsiSI CCGG 2 cut(s) 121, 856
BslFI GGGAC 1 cut(s) 596
BslI CCNNNNNNNGG 4 cut(s) 127, 539, 811, 1049
BsmAI GTCTC 2 cut(s) 563, 896
BsmFI GGGAC 1 cut(s) 596
BsnI GGCC 5 cut(s) 146, 233, 460, 465, 1008
Bsp1286I GDGCHC 1 cut(s) 579
Bsp143I GATC 5 cut(s) 16, 43, 67, 774, 919
BspANI GGCC 5 cut(s) 146, 233, 460, 465, 1008
BspCNI CTCAG 3 cut(s) 28, 152, 238
BspLI GGNNCC 4 cut(s) 578, 823, 854, 991
BspPI GGATC 1 cut(s) 62
BspQI GCTCTTC 1 cut(s) 186
BspT107I GGYRCC 1 cut(s) 576
BsrI ACTGG 5 cut(s) 72, 163, 392, 523, 816
BssECI CCNNGG 2 cut(s) 255, 752
BssMI GATC 5 cut(s) 16, 43, 67, 774, 919
BssSI CACGAG 1 cut(s) 105
BssT1I CCWWGG 2 cut(s) 255, 752
Bst2BI CACGAG 1 cut(s) 105
Bst2UI CCWGG 4 cut(s) 269, 462, 994, 1075
Bst4CI ACNGT 3 cut(s) 227, 694, 852
Bst6I CTCTTC 3 cut(s) 186, 561, 883
BstC8I GCNNGC 1 cut(s) 215
BstDEI CTNAG 3 cut(s) 36, 139, 246
BstF5I GGATG 2 cut(s) 116, 397
BstKTI GATC 5 cut(s) 19, 46, 70, 777, 922
BstMAI GTCTC 2 cut(s) 563, 896
BstMBI GATC 5 cut(s) 16, 43, 67, 774, 919
BstMWI GCNNNNNNNGC 3 cut(s) 152, 239, 366
BstNI CCWGG 4 cut(s) 269, 462, 994, 1075
BstNSI RCATGY 2 cut(s) 217, 984
BstSCI CCNGG 6 cut(s) 119, 267, 460, 855, 992, 1073
BstSFI CTRYAG 1 cut(s) 693
BstSLI GKGCMC 1 cut(s) 579
BstV1I GCAGC 2 cut(s) 229, 364
BstXI CCANNNNNNTGG 1 cut(s) 461
BsuRI GGCC 5 cut(s) 146, 233, 460, 465, 1008
BtsCI GGATG 2 cut(s) 116, 397
BtsI GCAGTG 2 cut(s) 372, 1030
BtsIMutI CAGTG 2 cut(s) 372, 1030
Cac8I GCNNGC 1 cut(s) 215
CaiI CAGNNNCTG 2 cut(s) 210, 931
Cfr13I GGNCC 1 cut(s) 232
Csp6I GTAC 2 cut(s) 622, 725
CviAII CATG 3 cut(s) 214, 505, 981
CviQI GTAC 2 cut(s) 622, 725
DdeI CTNAG 3 cut(s) 36, 139, 246
DpnI GATC 5 cut(s) 18, 45, 69, 776, 921
DpnII GATC 5 cut(s) 16, 43, 67, 774, 919
Eam1104I CTCTTC 3 cut(s) 186, 561, 883
EarI CTCTTC 3 cut(s) 186, 561, 883
Eco130I CCWWGG 2 cut(s) 255, 752
Eco147I AGGCCT 2 cut(s) 146, 1008
Eco32I GATATC 2 cut(s) 659, 667
Eco57I CTGAAG 3 cut(s) 203, 537, 750
EcoRII CCWGG 4 cut(s) 267, 460, 992, 1073
EcoRV GATATC 2 cut(s) 659, 667
EcoT14I CCWWGG 2 cut(s) 255, 752
ErhI CCWWGG 2 cut(s) 255, 752
FaeI CATG 3 cut(s) 217, 508, 984
FaqI GGGAC 1 cut(s) 596
FatI CATG 3 cut(s) 213, 504, 980
FbaI TGATCA 2 cut(s) 43, 774
Fnu4HI GCNGC 2 cut(s) 243, 378
FokI GGATG 2 cut(s) 103, 404
Fsp4HI GCNGC 2 cut(s) 243, 378
FspBI CTAG 2 cut(s) 381, 584
GluI GCNGC 2 cut(s) 243, 378
GsaI CCCAGC 1 cut(s) 1052
GsuI CTGGAG 2 cut(s) 133, 218
HaeIII GGCC 5 cut(s) 146, 233, 460, 465, 1008
HapII CCGG 2 cut(s) 121, 856
Hin1II CATG 3 cut(s) 217, 508, 984
HincII GTYRAC 1 cut(s) 690
HindII GTYRAC 1 cut(s) 690
HinfI GANTC 7 cut(s) 113, 559, 603, 748, 783, 928, 1080
HpaII CCGG 2 cut(s) 121, 856
Hpy166II GTNNAC 2 cut(s) 690, 700
Hpy188I TCNGA 6 cut(s) 21, 142, 340, 403, 556, 1085
Hpy8I GTNNAC 2 cut(s) 690, 700
HpyAV CCTTC 4 cut(s) 297, 561, 815, 847
HpyCH4III ACNGT 3 cut(s) 227, 694, 852
HpyCH4IV ACGT 1 cut(s) 723
HpyCH4V TGCA 5 cut(s) 213, 597, 711, 833, 910
HpyF10VI GCNNNNNNNGC 3 cut(s) 152, 239, 366
HpyF3I CTNAG 3 cut(s) 36, 139, 246
HpySE526I ACGT 1 cut(s) 723
Hsp92II CATG 3 cut(s) 217, 508, 984
Ksp22I TGATCA 2 cut(s) 43, 774
Kzo9I GATC 5 cut(s) 16, 43, 67, 774, 919
LguI GCTCTTC 1 cut(s) 186
LmnI GCTCC 1 cut(s) 374
Lsp1109I GCAGC 2 cut(s) 229, 364
LweI GCATC 1 cut(s) 168
MaeI CTAG 2 cut(s) 381, 584
MaeII ACGT 1 cut(s) 723
MaeIII GTNAC 2 cut(s) 133, 1061
MalI GATC 5 cut(s) 18, 45, 69, 776, 921
MboI GATC 5 cut(s) 16, 43, 67, 774, 919
MboII GAAGA 8 cut(s) 203, 272, 303, 578, 743, 832, 870, 929
MhlI GDGCHC 1 cut(s) 579
MluCI AATT 3 cut(s) 60, 426, 527
MlyI GAGTC 3 cut(s) 568, 742, 937
MroXI GAANNNNTTC 1 cut(s) 651
MseI TTAA 3 cut(s) 351, 716, 816
MspI CCGG 2 cut(s) 121, 856
MspR9I CCNGG 6 cut(s) 121, 269, 462, 857, 994, 1075
MvaI CCWGG 4 cut(s) 269, 462, 994, 1075
MwoI GCNNNNNNNGC 3 cut(s) 152, 239, 366
NciI CCSGG 2 cut(s) 121, 857
NdeII GATC 5 cut(s) 16, 43, 67, 774, 919
NlaIII CATG 3 cut(s) 217, 508, 984
NlaIV GGNNCC 4 cut(s) 578, 823, 854, 991
NmuCI GTSAC 1 cut(s) 133
NspI RCATGY 2 cut(s) 217, 984
PaeI GCATGC 1 cut(s) 217
PceI AGGCCT 2 cut(s) 146, 1008
PciSI GCTCTTC 1 cut(s) 186
PdmI GAANNNNTTC 1 cut(s) 651
PfeI GAWTC 4 cut(s) 113, 603, 783, 1080
PfoI TCCNGGA 2 cut(s) 855, 992
PkrI GCNGC 2 cut(s) 244, 379
PleI GAGTC 3 cut(s) 567, 742, 936
PpsI GAGTC 3 cut(s) 567, 742, 936
Psp6I CCWGG 4 cut(s) 267, 460, 992, 1073
PspFI CCCAGC 1 cut(s) 1048
PspGI CCWGG 4 cut(s) 267, 460, 992, 1073
PspN4I GGNNCC 4 cut(s) 578, 823, 854, 991
PspPI GGNCC 1 cut(s) 232
PstNI CAGNNNCTG 2 cut(s) 210, 931
RsaI GTAC 2 cut(s) 623, 726
RsaNI GTAC 2 cut(s) 622, 725
SapI GCTCTTC 1 cut(s) 186
SaqAI TTAA 3 cut(s) 351, 716, 816
SatI GCNGC 2 cut(s) 243, 378
Sau3AI GATC 5 cut(s) 16, 43, 67, 774, 919
Sau96I GGNCC 1 cut(s) 232
SchI GAGTC 3 cut(s) 568, 742, 937
ScrFI CCNGG 6 cut(s) 121, 269, 462, 857, 994, 1075
SduI GDGCHC 1 cut(s) 579
SfaNI GCATC 1 cut(s) 168
SfcI CTRYAG 1 cut(s) 693
SphI GCATGC 1 cut(s) 217
Sse9I AATT 3 cut(s) 60, 426, 527
SseBI AGGCCT 2 cut(s) 146, 1008
SspI AATATT 1 cut(s) 593
SspMI CTAG 2 cut(s) 381, 584
StuI AGGCCT 2 cut(s) 146, 1008
StyD4I CCNGG 6 cut(s) 119, 267, 460, 855, 992, 1073
StyI CCWWGG 2 cut(s) 255, 752
TaaI ACNGT 3 cut(s) 227, 694, 852
TaiI ACGT 1 cut(s) 726
TaqI TCGA 5 cut(s) 290, 496, 547, 655, 808
TasI AATT 3 cut(s) 60, 426, 527
TatI WGTACW 1 cut(s) 621
TfiI GAWTC 4 cut(s) 113, 603, 783, 1080
Tru1I TTAA 3 cut(s) 351, 716, 816
Tru9I TTAA 3 cut(s) 351, 716, 816
TscAI CASTG 2 cut(s) 379, 1030
TseFI GTSAC 1 cut(s) 133
TseI GCWGC 2 cut(s) 242, 377
Tsp45I GTSAC 1 cut(s) 133
TspDTI ATGAA 3 cut(s) 105, 337, 619
TspRI CASTG 2 cut(s) 379, 1030
XapI RAATTY 1 cut(s) 527
XceI RCATGY 2 cut(s) 217, 984
XmnI GAANNNNTTC 1 cut(s) 651
XspI CTAG 2 cut(s) 381, 584
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.