Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000235.1

Orthogroup ID

OG0000175

Physical Location & Seq

Genomic Coordinates Reverse (-)

12429 .. 13936

Gene Structure 1508 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000235.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

atgcttacagacgctcttagtccgaagtcttacgaacgctcttactcagtggtgcttgacttggaggatgcgtgcggtggtgggatttggcatagaggaggtcgccggctgcttgttttgctagggaagaaggctgcaggtgcagctgggtcgtgtggctgtccaagaggtactgcaggggcagcggactgctatgtgagctacaggggcagcggatgcacggtaggtgaggcggaagtgcggctagtgcgggctaggtgcaagcaaagttcacggtggagggttttggttgttgtggttagggctccaaccattcctcgtgaagataagcggcggatgatgttcgagagagaaatatatgataatgacataatgaatgtcatagcttgcgagggactggaaaggtttgaaagacctgatacatacaagaagtggcagatcaggaatgtgaggactgggttgaagcagcacccgttggaccaggagcggctgaagaaagtaaagaacttgtccaagttgatgggttatcataaggattttagagttaaagaagataggcattggatgctgcagggatggaaaggaaggatcatcgtggctctttcattttggatatctgcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAS

Protein Analysis

207

Amino Acids

23.63

Weight (kDa)

9.82

Isoelectric Point (pI)

43.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000175)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46600 AT3G46600 AT3G46600 AT5G59450
fragaria_vesca	FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36691 FvH4_3g36700 FvH4_3g36711 FvH4_3g36711 FvH4_3g36720 FvH4_3g36730 FvH4_3g36760
malus_domestica	MD03G1088900.v1.1 MD03G1089100.v1.1 MD03G1089200.v1.1 MD03G1089300.v1.1 MD11G1097900.v1.1 MD11G1098000.v1.1 MD11G1098100.v1.1 MD11G1098400.v1.1 MD11G1098900.v1.1
prunus_persica	Prupe.6G073300_v2.0.a1 Prupe.6G073400_v2.0.a1 Prupe.6G073400_v2.0.a1 Prupe.6G073500_v2.0.a1 Prupe.6G073600_v2.0.a1 Prupe.6G073700_v2.0.a1 Prupe.6G073800_v2.0.a1 Prupe.I004400_v2.0.a1 Prupe.I004500_v2.0.a1
pyrus_communis	pycom03g07050 pycom03g07060 pycom03g07070 pycom03g07110 pycom04g11870 pycom11g08270 pycom11g08280
rosa_chinensis	RchiOBHm_Chr5g0065591 RchiOBHm_Chr5g0065601 RchiOBHm_Chr5g0065621 RchiOBHm_Chr5g0065631 RchiOBHm_Chr5g0065641 RchiOBHm_Chr5g0065651 RchiOBHm_Chr5g0065671 RchiOBHm_Chr5g0065721 RchiOBHm_Chr5g0065731 RchiOBHm_Chr5g0065751 RchiOBHm_Chr5g0065791 RchiOBHm_Chr5g0065811
rosa_laevigata	RLG00000035800 RLG00000035801 RLG00000035803 RLG00000035804 RLG00000035805 RLG00000035806 RLG00000035807 RLG00000035808 RLG00000035809 RLG00000035810 RLG00000035813 RLG00000035814 RLG00000035816
rosa_multiflora	Rmu_co8233911.1_g000001 Rmu_co8258053.1_g000001 Rmu_co8279117.1_g000001 Rmu_sc0000235.1_g000004 Rmu_sc0000235.1_g000024 Rmu_sc0000235.1_g000060 Rmu_sc0000235.1_g000074 Rmu_sc0001010.1_g000001 Rmu_sc0001010.1_g000015 Rmu_sc0001010.1_g000030 Rmu_sc0001010.1_g000037 Rmu_sc0001010.1_g000043 Rmu_sc0001010.1_g000063 Rmu_sc0001010.1_g000066 Rmu_sc0003636.1_g000008 Rmu_sc0003636.1_g000011 Rmu_sc0003636.1_g000012 Rmu_sc0003636.1_g000015 Rmu_sc0005971.1_g000017 Rmu_sc0008231.1_g000001 Rmu_sc0032155.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015360 Rroxscaffold_1G00015390 Rroxscaffold_1G00015410 Rroxscaffold_1G00015430 Rroxscaffold_1G00015490 Rroxscaffold_1G00015520 Rroxscaffold_1G00015530 Rroxscaffold_1G00015550 Rroxscaffold_1G00015560 Rroxscaffold_1G00015580 Rroxscaffold_1G00015600 Rroxscaffold_1G00015610 Rroxscaffold_1G00015620 Rroxscaffold_1G00015630
rosa_rugosa	Rorug05G0372800 Rorug05G0372800 Rorug05G0372800 Rorug05G0372800 Rorug05G0373100 Rorug05G0373100 Rorug05G0373200 Rorug05G0373300 Rorug05G0373400 Rorug05G0373500 Rorug05G0373600 Rorug05G0373700 Rorug05G0378700
rosa_samantha	Rh5AG430900 Rh5AG431000 Rh5AG431100 Rh5AG431200 Rh5AG431700 Rh5AG431800 Rh5AG431900 Rh5AG432200 Rh5AG432500 Rh5BG445200 Rh5BG446000 Rh5BG447100 Rh5BG447200 Rh5BG447400 Rh5BG447800 Rh5BG447900 Rh5BG448000 Rh5BG448100 Rh5BG448300 Rh5BG448400 Rh5BG448500 Rh5BG448600 Rh5CG467400 Rh5CG468000 Rh5CG469000 Rh5CG469100 Rh5CG469400 Rh5CG469700 Rh5CG469900 Rh5CG470100 Rh5CG470200 Rh5CG470600 Rh5CG470700 Rh5CG470800 Rh5DG459500 Rh5DG459700 Rh5DG459800 Rh5DG460000 Rh5DG460900 Rh5DG461300 Rh5DG461500 Rh5DG461900 Rh5DG462000 Rh5DG462100
rosa_wichuraiana	Rw5G040420 Rw5G040430 Rw5G040440 Rw5G040470 Rw5G040480 Rw5G040500 Rw5G040510 Rw5G040530 Rw5G040550 Rw5G040560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	128
Acc36I	ACCTGC	1 cut(s)	128
AccBSI	CCGCTC	1 cut(s)	487
AciI	CCGC	9 cut(s)	75, 185, 213, 233, 241, 250, 331, 334, 487
AclWI	GGATC	1 cut(s)	596
AcuI	CTGAAG	1 cut(s)	512
AfaI	GTAC	1 cut(s)	172
AgsI	TTSAA	2 cut(s)	410, 463
AjnI	CCWGG	1 cut(s)	480
AluBI	AGCT	3 cut(s)	146, 201, 386
AluI	AGCT	3 cut(s)	146, 201, 386
AlwI	GGATC	1 cut(s)	596
ApeKI	GCWGC	7 cut(s)	109, 134, 143, 182, 210, 466, 568
AspS9I	GGNCC	1 cut(s)	478
AsuHPI	GGTGA	1 cut(s)	239
AvaII	GGWCC	1 cut(s)	478
BanII	GRGCYC	1 cut(s)	307
BauI	CACGAG	1 cut(s)	318
BbvI	GCAGC	7 cut(s)	96, 121, 155, 194, 222, 478, 555
BccI	CCATC	2 cut(s)	514, 570
BcgI	CGANNNNNNTGC	2 cut(s)	132, 166
BciT130I	CCWGG	1 cut(s)	482
BfaI	CTAG	4 cut(s)	122, 245, 255, 622
BfmI	CTRYAG	4 cut(s)	135, 174, 202, 569
BfuAI	ACCTGC	1 cut(s)	128
Bme1390I	CCNGG	1 cut(s)	482
Bme18I	GGWCC	1 cut(s)	478
BmgT120I	GGNCC	1 cut(s)	478
BmiI	GGNNCC	1 cut(s)	306
BmrFI	CCNGG	1 cut(s)	482
BmrI	ACTGGG	1 cut(s)	465
BmsI	GCATC	3 cut(s)	58, 206, 555
BmuI	ACTGGG	1 cut(s)	465
BsaXI	ACNNNNNCTCC	2 cut(s)	56, 86
Bse118I	RCCGGY	1 cut(s)	105
Bse1I	ACTGG	2 cut(s)	402, 460
BseBI	CCWGG	1 cut(s)	482
BseGI	GGATG	5 cut(s)	73, 221, 342, 570, 581
BseMII	CTCAG	1 cut(s)	60
BseNI	ACTGG	2 cut(s)	402, 460
BseRI	GAGGAG	1 cut(s)	111
BseXI	GCAGC	7 cut(s)	96, 121, 155, 194, 222, 478, 555
BseYI	CCCAGC	1 cut(s)	146
BsgI	GTGCAG	1 cut(s)	162
BsiSI	CCGG	1 cut(s)	106
BslFI	GGGAC	1 cut(s)	408
BsmFI	GGGAC	1 cut(s)	408
Bsp1286I	GDGCHC	1 cut(s)	307
Bsp143I	GATC	2 cut(s)	438, 588
BspACI	CCGC	9 cut(s)	75, 185, 213, 233, 241, 250, 331, 334, 487
BspCNI	CTCAG	1 cut(s)	59
BspLI	GGNNCC	1 cut(s)	306
BspMAI	CTGCAG	3 cut(s)	139, 178, 573
BspMI	ACCTGC	1 cut(s)	128
BspPI	GGATC	1 cut(s)	596
BsrBI	CCGCTC	1 cut(s)	487
BsrFI	RCCGGY	1 cut(s)	105
BsrI	ACTGG	2 cut(s)	402, 460
BssAI	RCCGGY	1 cut(s)	105
BssMI	GATC	2 cut(s)	438, 588
BssSI	CACGAG	1 cut(s)	318
Bst2BI	CACGAG	1 cut(s)	318
Bst2UI	CCWGG	1 cut(s)	482
Bst4CI	ACNGT	2 cut(s)	223, 276
BstAPI	GCANNNNNTGC	2 cut(s)	216, 565
BstC8I	GCNNGC	5 cut(s)	73, 107, 252, 263, 388
BstDEI	CTNAG	2 cut(s)	17, 46
BstF5I	GGATG	5 cut(s)	73, 221, 342, 570, 581
BstKTI	GATC	2 cut(s)	441, 591
BstMBI	GATC	2 cut(s)	438, 588
BstMWI	GCNNNNNNNGC	9 cut(s)	118, 140, 143, 182, 198, 207, 216, 247, 565
BstNI	CCWGG	1 cut(s)	482
BstSCI	CCNGG	1 cut(s)	480
BstSFI	CTRYAG	4 cut(s)	135, 174, 202, 569
BstV1I	GCAGC	7 cut(s)	96, 121, 155, 194, 222, 478, 555
BstXI	CCANNNNNNTGG	1 cut(s)	520
BtsCI	GGATG	5 cut(s)	73, 221, 342, 570, 581
BtsIMutI	CAGTG	1 cut(s)	54
BveI	ACCTGC	1 cut(s)	128
Cac8I	GCNNGC	5 cut(s)	73, 107, 252, 263, 388
Cfr10I	RCCGGY	1 cut(s)	105
Cfr13I	GGNCC	1 cut(s)	478
CseI	GACGC	1 cut(s)	20
Csp6I	GTAC	1 cut(s)	171
CviQI	GTAC	1 cut(s)	171
DdeI	CTNAG	2 cut(s)	17, 46
DpnI	GATC	2 cut(s)	440, 590
DpnII	GATC	2 cut(s)	438, 588
EciI	GGCGGA	2 cut(s)	248, 349
Eco24I	GRGCYC	1 cut(s)	307
Eco32I	GATATC	1 cut(s)	615
Eco47I	GGWCC	1 cut(s)	478
Eco57I	CTGAAG	1 cut(s)	512
EcoRII	CCWGG	1 cut(s)	480
EcoRV	GATATC	1 cut(s)	615
EcoT38I	GRGCYC	1 cut(s)	307
FaiI	YATR	8 cut(s)	93, 195, 358, 360, 371, 383, 424, 531
FaqI	GGGAC	1 cut(s)	408
FauI	CCCGC	1 cut(s)	243
FokI	GGATG	5 cut(s)	80, 228, 349, 577, 588
FriOI	GRGCYC	1 cut(s)	307
FspBI	CTAG	4 cut(s)	122, 245, 255, 622
GsaI	CCCAGC	1 cut(s)	150
HapII	CCGG	1 cut(s)	106
HgaI	GACGC	1 cut(s)	20
HpaII	CCGG	1 cut(s)	106
HphI	GGTGA	1 cut(s)	239
Hpy166II	GTNNAC	1 cut(s)	272
Hpy188I	TCNGA	1 cut(s)	24
Hpy188III	TCNNGA	3 cut(s)	320, 346, 442
Hpy8I	GTNNAC	1 cut(s)	272
HpyAV	CCTTC	2 cut(s)	124, 579
HpyCH4III	ACNGT	2 cut(s)	223, 276
HpyCH4V	TGCA	6 cut(s)	137, 143, 176, 219, 261, 571
HpyF10VI	GCNNNNNNNGC	9 cut(s)	118, 140, 143, 182, 198, 207, 216, 247, 565
HpyF3I	CTNAG	2 cut(s)	17, 46
KroI	GCCGGC	1 cut(s)	105
KroNI	GCCGGC	1 cut(s)	107
Kzo9I	GATC	2 cut(s)	438, 588
LmnI	GCTCC	2 cut(s)	310, 484
Lsp1109I	GCAGC	7 cut(s)	96, 121, 155, 194, 222, 478, 555
LweI	GCATC	3 cut(s)	58, 206, 555
MaeI	CTAG	4 cut(s)	122, 245, 255, 622
MalI	GATC	2 cut(s)	440, 590
MbiI	CCGCTC	1 cut(s)	487
MboI	GATC	2 cut(s)	438, 588
MboII	GAAGA	4 cut(s)	139, 335, 505, 563
MhlI	GDGCHC	1 cut(s)	307
MmeI	TCCRAC	2 cut(s)	332, 456
MnlI	CCTC	9 cut(s)	58, 89, 92, 161, 223, 273, 327, 385, 444
MroNI	GCCGGC	1 cut(s)	105
MseI	TTAA	1 cut(s)	546
MspA1I	CMGCKG	3 cut(s)	146, 185, 213
MspI	CCGG	1 cut(s)	106
MspR9I	CCNGG	1 cut(s)	482
MvaI	CCWGG	1 cut(s)	482
MwoI	GCNNNNNNNGC	9 cut(s)	118, 140, 143, 182, 198, 207, 216, 247, 565
NaeI	GCCGGC	1 cut(s)	107
NdeII	GATC	2 cut(s)	438, 588
NgoMIV	GCCGGC	1 cut(s)	105
NlaIV	GGNNCC	1 cut(s)	306
PaqCI	CACCTGC	1 cut(s)	128
PdiI	GCCGGC	1 cut(s)	107
Psp6I	CCWGG	1 cut(s)	480
PspFI	CCCAGC	1 cut(s)	146
PspGI	CCWGG	1 cut(s)	480
PspN4I	GGNNCC	1 cut(s)	306
PspPI	GGNCC	1 cut(s)	478
PstI	CTGCAG	3 cut(s)	139, 178, 573
PvuII	CAGCTG	1 cut(s)	146
RsaI	GTAC	1 cut(s)	172
RsaNI	GTAC	1 cut(s)	171
SaqAI	TTAA	1 cut(s)	546
Sau3AI	GATC	2 cut(s)	438, 588
Sau96I	GGNCC	1 cut(s)	478
ScrFI	CCNGG	1 cut(s)	482
SduI	GDGCHC	1 cut(s)	307
SfaNI	GCATC	3 cut(s)	58, 206, 555
SfcI	CTRYAG	4 cut(s)	135, 174, 202, 569
SinI	GGWCC	1 cut(s)	478
SsiI	CCGC	9 cut(s)	75, 185, 213, 233, 241, 250, 331, 334, 487
SspMI	CTAG	4 cut(s)	122, 245, 255, 622
StyD4I	CCNGG	1 cut(s)	480
TaaI	ACNGT	2 cut(s)	223, 276
TaqI	TCGA	1 cut(s)	345
TauI	GCSGC	3 cut(s)	244, 334, 490
Tru1I	TTAA	1 cut(s)	546
Tru9I	TTAA	1 cut(s)	546
TscAI	CASTG	1 cut(s)	54
TseI	GCWGC	7 cut(s)	109, 134, 143, 182, 210, 466, 568
TspDTI	ATGAA	2 cut(s)	389, 594
TspRI	CASTG	1 cut(s)	54
VpaK11BI	GGWCC	1 cut(s)	478
XspI	CTAG	4 cut(s)	122, 245, 255, 622

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.