Rh5BG446000

Belongs to the GRAS family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000175
Physical Location & Seq
Forward (+)
71514603 .. 71514932
330 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG446000.1

Sequence Viewer

Length: 330 bp
ATGTTGGATAACAATTTGCCTCCTGACGATCAGATGAGATTGGGGTTTGAGAAAGAGTTTATTGGACGTGAAGTTGTGAATATAGTAGCTTGTGAGGGCTCTCAAAGAATTGTTAGGCCAGAAACATTCAAGCAGTGGCAGATTCGAAACATAAGGGCTGGGTTCAGACAGCTACCATTGGACCGTGAAGTCATGAACAAAATAAAGGATAAGGTAAAAATGGGGTACCACCCTTATTTTGTTGTTGATGAAGATGGCCACTGGATGCTGCAGGGATGGAAGGGCAGAATTATGTTTGCTTCTGCCTGTTGGGCACCATCTAGGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GRAS

Protein Analysis

109

Amino Acids

12.87

Weight (kDa)

9.06

Isoelectric Point (pI)

51.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRAS PF03514 1 - 104 5.6e-24 GRAS domain family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000175)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G46600 AT3G46600 AT3G46600 AT5G59450
fragaria_vesca FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36691 FvH4_3g36700 FvH4_3g36711 FvH4_3g36711 FvH4_3g36720 FvH4_3g36730 FvH4_3g36760
malus_domestica MD03G1088900.v1.1 MD03G1089100.v1.1 MD03G1089200.v1.1 MD03G1089300.v1.1 MD11G1097900.v1.1 MD11G1098000.v1.1 MD11G1098100.v1.1 MD11G1098400.v1.1 MD11G1098900.v1.1
prunus_persica Prupe.6G073300_v2.0.a1 Prupe.6G073400_v2.0.a1 Prupe.6G073400_v2.0.a1 Prupe.6G073500_v2.0.a1 Prupe.6G073600_v2.0.a1 Prupe.6G073700_v2.0.a1 Prupe.6G073800_v2.0.a1 Prupe.I004400_v2.0.a1 Prupe.I004500_v2.0.a1
pyrus_communis pycom03g07050 pycom03g07060 pycom03g07070 pycom03g07110 pycom04g11870 pycom11g08270 pycom11g08280
rosa_chinensis RchiOBHm_Chr5g0065591 RchiOBHm_Chr5g0065601 RchiOBHm_Chr5g0065621 RchiOBHm_Chr5g0065631 RchiOBHm_Chr5g0065641 RchiOBHm_Chr5g0065651 RchiOBHm_Chr5g0065671 RchiOBHm_Chr5g0065721 RchiOBHm_Chr5g0065731 RchiOBHm_Chr5g0065751 RchiOBHm_Chr5g0065791 RchiOBHm_Chr5g0065811
rosa_laevigata RLG00000035800 RLG00000035801 RLG00000035803 RLG00000035804 RLG00000035805 RLG00000035806 RLG00000035807 RLG00000035808 RLG00000035809 RLG00000035810 RLG00000035813 RLG00000035814 RLG00000035816
rosa_multiflora Rmu_co8233911.1_g000001 Rmu_co8258053.1_g000001 Rmu_co8279117.1_g000001 Rmu_sc0000235.1_g000004 Rmu_sc0000235.1_g000024 Rmu_sc0000235.1_g000060 Rmu_sc0000235.1_g000074 Rmu_sc0001010.1_g000001 Rmu_sc0001010.1_g000015 Rmu_sc0001010.1_g000030 Rmu_sc0001010.1_g000037 Rmu_sc0001010.1_g000043 Rmu_sc0001010.1_g000063 Rmu_sc0001010.1_g000066 Rmu_sc0003636.1_g000008 Rmu_sc0003636.1_g000011 Rmu_sc0003636.1_g000012 Rmu_sc0003636.1_g000015 Rmu_sc0005971.1_g000017 Rmu_sc0008231.1_g000001 Rmu_sc0032155.1_g000001
rosa_roxburghii Rroxscaffold_1G00015360 Rroxscaffold_1G00015390 Rroxscaffold_1G00015410 Rroxscaffold_1G00015430 Rroxscaffold_1G00015490 Rroxscaffold_1G00015520 Rroxscaffold_1G00015530 Rroxscaffold_1G00015550 Rroxscaffold_1G00015560 Rroxscaffold_1G00015580 Rroxscaffold_1G00015600 Rroxscaffold_1G00015610 Rroxscaffold_1G00015620 Rroxscaffold_1G00015630
rosa_rugosa Rorug05G0372800 Rorug05G0372800 Rorug05G0372800 Rorug05G0372800 Rorug05G0373100 Rorug05G0373100 Rorug05G0373200 Rorug05G0373300 Rorug05G0373400 Rorug05G0373500 Rorug05G0373600 Rorug05G0373700 Rorug05G0378700
rosa_samantha Rh5AG430900 Rh5AG431000 Rh5AG431100 Rh5AG431200 Rh5AG431700 Rh5AG431800 Rh5AG431900 Rh5AG432200 Rh5AG432500 Rh5BG445200 Rh5BG446000 Rh5BG447100 Rh5BG447200 Rh5BG447400 Rh5BG447800 Rh5BG447900 Rh5BG448000 Rh5BG448100 Rh5BG448300 Rh5BG448400 Rh5BG448500 Rh5BG448600 Rh5CG467400 Rh5CG468000 Rh5CG469000 Rh5CG469100 Rh5CG469400 Rh5CG469700 Rh5CG469900 Rh5CG470100 Rh5CG470200 Rh5CG470600 Rh5CG470700 Rh5CG470800 Rh5DG459500 Rh5DG459700 Rh5DG459800 Rh5DG460000 Rh5DG460900 Rh5DG461300 Rh5DG461500 Rh5DG461900 Rh5DG462000 Rh5DG462100
rosa_wichuraiana Rw5G040420 Rw5G040430 Rw5G040440 Rw5G040470 Rw5G040480 Rw5G040500 Rw5G040510 Rw5G040530 Rw5G040550 Rw5G040560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 188
Acc65I GGTACC 1 cut(s) 225
AccB1I GGYRCC 2 cut(s) 225, 313
AcoI YGGCCR 1 cut(s) 256
AfaI GTAC 1 cut(s) 227
AgsI TTSAA 1 cut(s) 130
AjiI CACGTC 1 cut(s) 68
AluBI AGCT 2 cut(s) 89, 172
AluI AGCT 2 cut(s) 89, 172
AoxI GGCC 2 cut(s) 116, 256
ApeKI GCWGC 1 cut(s) 268
Asp718I GGTACC 1 cut(s) 225
AspS9I GGNCC 1 cut(s) 181
AsuII TTCGAA 1 cut(s) 145
AvaII GGWCC 1 cut(s) 181
BaeGI GKGCMC 1 cut(s) 316
BalI TGGCCA 1 cut(s) 258
BanI GGYRCC 2 cut(s) 225, 313
BanII GRGCYC 1 cut(s) 101
BbvI GCAGC 1 cut(s) 255
BccI CCATC 3 cut(s) 248, 270, 325
BfaI CTAG 1 cut(s) 321
BfmI CTRYAG 1 cut(s) 269
BglI GCCNNNNNGGC 1 cut(s) 311
BisI GCNGC 1 cut(s) 269
BlsI GCNGC 1 cut(s) 270
Bme18I GGWCC 1 cut(s) 181
BmgBI CACGTC 1 cut(s) 68
BmgT120I GGNCC 1 cut(s) 181
BmiI GGNNCC 2 cut(s) 227, 315
BmsI GCATC 1 cut(s) 255
Bpu14I TTCGAA 1 cut(s) 145
Bse1I ACTGG 1 cut(s) 266
BseGI GGATG 2 cut(s) 270, 281
BseNI ACTGG 1 cut(s) 266
BseSI GKGCMC 1 cut(s) 316
BseXI GCAGC 1 cut(s) 255
BseYI CCCAGC 1 cut(s) 158
BshFI GGCC 2 cut(s) 118, 258
BshNI GGYRCC 2 cut(s) 225, 313
BsnI GGCC 2 cut(s) 118, 258
Bsp119I TTCGAA 1 cut(s) 145
Bsp1286I GDGCHC 2 cut(s) 101, 316
Bsp143I GATC 1 cut(s) 28
BspANI GGCC 2 cut(s) 118, 258
BspHI TCATGA 1 cut(s) 192
BspLI GGNNCC 2 cut(s) 227, 315
BspMAI CTGCAG 1 cut(s) 273
BspT104I TTCGAA 1 cut(s) 145
BspT107I GGYRCC 2 cut(s) 225, 313
BsrI ACTGG 1 cut(s) 266
BssMI GATC 1 cut(s) 28
Bst4CI ACNGT 1 cut(s) 185
BstBI TTCGAA 1 cut(s) 145
BstF5I GGATG 2 cut(s) 270, 281
BstKTI GATC 1 cut(s) 31
BstMBI GATC 1 cut(s) 28
BstMWI GCNNNNNNNGC 1 cut(s) 311
BstSFI CTRYAG 1 cut(s) 269
BstSLI GKGCMC 1 cut(s) 316
BstV1I GCAGC 1 cut(s) 255
BsuRI GGCC 2 cut(s) 118, 258
BtrI CACGTC 1 cut(s) 68
BtsCI GGATG 2 cut(s) 270, 281
BtsI GCAGTG 1 cut(s) 140
BtsIMutI CAGTG 2 cut(s) 140, 259
CciI TCATGA 1 cut(s) 192
Cfr13I GGNCC 1 cut(s) 181
Csp6I GTAC 1 cut(s) 226
CviAII CATG 1 cut(s) 193
CviJI RGCY 6 cut(s) 89, 99, 118, 158, 172, 258
CviKI_1 RGCY 6 cut(s) 89, 99, 118, 158, 172, 258
CviQI GTAC 1 cut(s) 226
DpnI GATC 1 cut(s) 30
DpnII GATC 1 cut(s) 28
DrdI GACNNNNNNGTC 1 cut(s) 188
DseDI GACNNNNNNGTC 1 cut(s) 188
EaeI YGGCCR 1 cut(s) 256
Eco24I GRGCYC 1 cut(s) 101
Eco47I GGWCC 1 cut(s) 181
EcoT38I GRGCYC 1 cut(s) 101
FaeI CATG 1 cut(s) 196
FaiI YATR 4 cut(s) 83, 152, 194, 293
FatI CATG 1 cut(s) 192
Fnu4HI GCNGC 1 cut(s) 269
FokI GGATG 2 cut(s) 277, 288
FriOI GRGCYC 1 cut(s) 101
Fsp4HI GCNGC 1 cut(s) 269
FspBI CTAG 1 cut(s) 321
GluI GCNGC 1 cut(s) 269
GsaI CCCAGC 1 cut(s) 162
HaeIII GGCC 2 cut(s) 118, 258
Hin1II CATG 1 cut(s) 196
HinfI GANTC 1 cut(s) 142
Hpy188I TCNGA 2 cut(s) 33, 167
Hpy188III TCNNGA 2 cut(s) 23, 193
HpyAV CCTTC 1 cut(s) 274
HpyCH4III ACNGT 1 cut(s) 185
HpyCH4IV ACGT 1 cut(s) 67
HpyCH4V TGCA 1 cut(s) 271
HpyF10VI GCNNNNNNNGC 1 cut(s) 311
HpySE526I ACGT 1 cut(s) 67
Hsp92II CATG 1 cut(s) 196
KpnI GGTACC 1 cut(s) 229
Kzo9I GATC 1 cut(s) 28
LpnPI CCDG 6 cut(s) 36, 132, 144, 247, 257, 319
Lsp1109I GCAGC 1 cut(s) 255
LweI GCATC 1 cut(s) 255
MaeI CTAG 1 cut(s) 321
MaeII ACGT 1 cut(s) 67
MalI GATC 1 cut(s) 30
MboI GATC 1 cut(s) 28
MboII GAAGA 1 cut(s) 263
MhlI GDGCHC 2 cut(s) 101, 316
MlsI TGGCCA 1 cut(s) 258
MluCI AATT 3 cut(s) 13, 108, 288
MluNI TGGCCA 1 cut(s) 258
MnlI CCTC 2 cut(s) 30, 88
Mox20I TGGCCA 1 cut(s) 258
MscI TGGCCA 1 cut(s) 258
Msp20I TGGCCA 1 cut(s) 258
MwoI GCNNNNNNNGC 1 cut(s) 311
NdeII GATC 1 cut(s) 28
NlaIII CATG 1 cut(s) 196
NlaIV GGNNCC 2 cut(s) 227, 315
NspV TTCGAA 1 cut(s) 145
PagI TCATGA 1 cut(s) 192
PfeI GAWTC 1 cut(s) 142
PkrI GCNGC 1 cut(s) 270
PspFI CCCAGC 1 cut(s) 158
PspN4I GGNNCC 2 cut(s) 227, 315
PspPI GGNCC 1 cut(s) 181
PstI CTGCAG 1 cut(s) 273
RsaI GTAC 1 cut(s) 227
RsaNI GTAC 1 cut(s) 226
SatI GCNGC 1 cut(s) 269
Sau3AI GATC 1 cut(s) 28
Sau96I GGNCC 1 cut(s) 181
SduI GDGCHC 2 cut(s) 101, 316
SetI ASST 4 cut(s) 70, 91, 174, 216
SfaNI GCATC 1 cut(s) 255
SfcI CTRYAG 1 cut(s) 269
SfuI TTCGAA 1 cut(s) 145
SinI GGWCC 1 cut(s) 181
Sse9I AATT 3 cut(s) 13, 108, 288
SspMI CTAG 1 cut(s) 321
TaaI ACNGT 1 cut(s) 185
TaiI ACGT 1 cut(s) 70
TaqI TCGA 1 cut(s) 145
TasI AATT 3 cut(s) 13, 108, 288
TfiI GAWTC 1 cut(s) 142
TscAI CASTG 2 cut(s) 140, 266
TseI GCWGC 1 cut(s) 268
TspDTI ATGAA 2 cut(s) 209, 264
TspRI CASTG 2 cut(s) 140, 266
VpaK11BI GGWCC 1 cut(s) 181
XspI CTAG 1 cut(s) 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.