Rroxscaffold_1G00015520

Belongs to the GRAS family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
19300886 .. 19301953
1068 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00015520.1

Sequence Viewer

Length: 1068 bp
ATGGATACCTTTTTTGATACAATTTCTGGTCCTACGGAAAGATTCAAATTTGGCCATGCCTTAACTTCAGTCACTTCCAATCCAAATCTTGACAACAGGTTTCAAATAAATCAGGAATCCACCGATACAGCTTTTCATCCCAGTGATTCAGGTACGTCTTTGAGCCCGGATTCCGAGGAAGAAACTTTTGATATAAATTACTTCAATAATCCGATGCTCAAGTACATAAGTGATATTCTTCTGGATGAAGAACTGGAAGGAAAGAACTGCATGTTGCAGGACAGTTTGTCTCTCCAAGCTGCAGAAAAATCTTTCTACGATGTCCTTAATCCGAAGGATCCTCCTTCACCCAACCAACTCCCTCTGCCTGTGTACCAAAACTTTGAGCGCTCGGATGATGATTCCACTCATATGTTGCACCAATCTTCTCTTGTTGAGTCTTTTTCAGATACTCTTTTGGTTTCAGATTCTCTTTTCAAGAAGCATGGTCTTGGGAATTTCAAACAGGCTGGGGAGGCAAACAAGTTCCTTACAAATGGGAATTTCGGTATCATTCATGAGGAGAGGTACCATAAAAATGGACTAAAGGGAAAGAAGAATCATCAAAGAGATGATGAAAATTATCCAGAAGAAGGGAGAAGCAGCAAGCAGTCGGTTGTTTCTGCCGATGACTCTGAGCCTCAAGAAATGTTTGATAAGGTGTTACTCTGTCAAGGTGAGCATCATCAGGAGTGGGAGTCTTGTACTCCTCATTGCTCTATGAAAAGGGAAGGAAGTCAGGGAACAGAGCAGTTGCACCATAACAGGCAGTCAAAAGGATCTAAAACAAATCGTTCGAAGCGACAAAATAAAGATGAGGAAGCAGGAGTAGATTTGACCACAATGCTAAATCAATGTGCACAAGCCGTGGCAAGCTATGAACAAGGAACGGCGAGTGAACTACTCAAGAAGATAAGGCAGCACTCCTCCCCATGGACATGCAACTCAAAGATTAGCTCACTACTTTGCCAATGGCCTAGAGGCGCGGCTTACTGGTGTCGGAACCCCATCATTTTCACCTCTCTTTAG

Protein Analysis

355

Amino Acids

40.21

Weight (kDa)

5.32

Isoelectric Point (pI)

45.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000175)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G46600 AT3G46600 AT3G46600 AT5G59450
fragaria_vesca FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36691 FvH4_3g36700 FvH4_3g36711 FvH4_3g36711 FvH4_3g36720 FvH4_3g36730 FvH4_3g36760
malus_domestica MD03G1088900.v1.1 MD03G1089100.v1.1 MD03G1089200.v1.1 MD03G1089300.v1.1 MD11G1097900.v1.1 MD11G1098000.v1.1 MD11G1098100.v1.1 MD11G1098400.v1.1 MD11G1098900.v1.1
prunus_persica Prupe.6G073300_v2.0.a1 Prupe.6G073400_v2.0.a1 Prupe.6G073400_v2.0.a1 Prupe.6G073500_v2.0.a1 Prupe.6G073600_v2.0.a1 Prupe.6G073700_v2.0.a1 Prupe.6G073800_v2.0.a1 Prupe.I004400_v2.0.a1 Prupe.I004500_v2.0.a1
pyrus_communis pycom03g07050 pycom03g07060 pycom03g07070 pycom03g07110 pycom04g11870 pycom11g08270 pycom11g08280
rosa_chinensis RchiOBHm_Chr5g0065591 RchiOBHm_Chr5g0065601 RchiOBHm_Chr5g0065621 RchiOBHm_Chr5g0065631 RchiOBHm_Chr5g0065641 RchiOBHm_Chr5g0065651 RchiOBHm_Chr5g0065671 RchiOBHm_Chr5g0065721 RchiOBHm_Chr5g0065731 RchiOBHm_Chr5g0065751 RchiOBHm_Chr5g0065791 RchiOBHm_Chr5g0065811
rosa_laevigata RLG00000035800 RLG00000035801 RLG00000035803 RLG00000035804 RLG00000035805 RLG00000035806 RLG00000035807 RLG00000035808 RLG00000035809 RLG00000035810 RLG00000035813 RLG00000035814 RLG00000035816
rosa_multiflora Rmu_co8233911.1_g000001 Rmu_co8258053.1_g000001 Rmu_co8279117.1_g000001 Rmu_sc0000235.1_g000004 Rmu_sc0000235.1_g000024 Rmu_sc0000235.1_g000060 Rmu_sc0000235.1_g000074 Rmu_sc0001010.1_g000001 Rmu_sc0001010.1_g000015 Rmu_sc0001010.1_g000030 Rmu_sc0001010.1_g000037 Rmu_sc0001010.1_g000043 Rmu_sc0001010.1_g000063 Rmu_sc0001010.1_g000066 Rmu_sc0003636.1_g000008 Rmu_sc0003636.1_g000011 Rmu_sc0003636.1_g000012 Rmu_sc0003636.1_g000015 Rmu_sc0005971.1_g000017 Rmu_sc0008231.1_g000001 Rmu_sc0032155.1_g000001
rosa_roxburghii Rroxscaffold_1G00015360 Rroxscaffold_1G00015390 Rroxscaffold_1G00015410 Rroxscaffold_1G00015430 Rroxscaffold_1G00015490 Rroxscaffold_1G00015520 Rroxscaffold_1G00015530 Rroxscaffold_1G00015550 Rroxscaffold_1G00015560 Rroxscaffold_1G00015580 Rroxscaffold_1G00015600 Rroxscaffold_1G00015610 Rroxscaffold_1G00015620 Rroxscaffold_1G00015630
rosa_rugosa Rorug05G0372800 Rorug05G0372800 Rorug05G0372800 Rorug05G0372800 Rorug05G0373100 Rorug05G0373100 Rorug05G0373200 Rorug05G0373300 Rorug05G0373400 Rorug05G0373500 Rorug05G0373600 Rorug05G0373700 Rorug05G0378700
rosa_samantha Rh5AG430900 Rh5AG431000 Rh5AG431100 Rh5AG431200 Rh5AG431700 Rh5AG431800 Rh5AG431900 Rh5AG432200 Rh5AG432500 Rh5BG445200 Rh5BG446000 Rh5BG447100 Rh5BG447200 Rh5BG447400 Rh5BG447800 Rh5BG447900 Rh5BG448000 Rh5BG448100 Rh5BG448300 Rh5BG448400 Rh5BG448500 Rh5BG448600 Rh5CG467400 Rh5CG468000 Rh5CG469000 Rh5CG469100 Rh5CG469400 Rh5CG469700 Rh5CG469900 Rh5CG470100 Rh5CG470200 Rh5CG470600 Rh5CG470700 Rh5CG470800 Rh5DG459500 Rh5DG459700 Rh5DG459800 Rh5DG460000 Rh5DG460900 Rh5DG461300 Rh5DG461500 Rh5DG461900 Rh5DG462000 Rh5DG462100
rosa_wichuraiana Rw5G040420 Rw5G040430 Rw5G040440 Rw5G040470 Rw5G040480 Rw5G040500 Rw5G040510 Rw5G040530 Rw5G040550 Rw5G040560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 567
AccB1I GGYRCC 1 cut(s) 567
AccII CGCG 1 cut(s) 1025
AciI CCGC 1 cut(s) 1025
AclWI GGATC 3 cut(s) 332, 345, 826
AcoI YGGCCR 1 cut(s) 52
AcsI RAATTY 3 cut(s) 47, 496, 541
AcuI CTGAAG 1 cut(s) 51
AfaI GTAC 5 cut(s) 154, 224, 374, 569, 745
AfeI AGCGCT 1 cut(s) 389
AfiI CCNNNNNNNGG 2 cut(s) 632, 972
AgsI TTSAA 5 cut(s) 46, 104, 205, 478, 502
AhdI GACNNNNNGTC 1 cut(s) 286
AluBI AGCT 4 cut(s) 131, 299, 915, 996
AluI AGCT 4 cut(s) 131, 299, 915, 996
Alw21I GWGCWC 1 cut(s) 901
Alw26I GTCTC 1 cut(s) 294
Alw44I GTGCAC 1 cut(s) 897
AlwI GGATC 3 cut(s) 332, 345, 826
Aor51HI AGCGCT 1 cut(s) 389
AoxI GGCC 2 cut(s) 52, 1013
ApaLI GTGCAC 1 cut(s) 897
ApeKI GCWGC 3 cut(s) 299, 642, 958
ApoI RAATTY 3 cut(s) 47, 496, 541
Asp718I GGTACC 1 cut(s) 567
AspLEI GCGC 2 cut(s) 390, 1025
AspS9I GGNCC 1 cut(s) 29
AsuC2I CCSGG 1 cut(s) 167
AsuHPI GGTGA 3 cut(s) 339, 728, 1048
AsuII TTCGAA 1 cut(s) 836
AvaII GGWCC 1 cut(s) 29
BaeGI GKGCMC 1 cut(s) 901
BalI TGGCCA 1 cut(s) 54
BamHI GGATCC 1 cut(s) 337
BanI GGYRCC 1 cut(s) 567
BanII GRGCYC 1 cut(s) 167
Bbv12I GWGCWC 1 cut(s) 901
BbvI GCAGC 3 cut(s) 286, 654, 970
BccI CCATC 1 cut(s) 1055
BceAI ACGGC 2 cut(s) 890, 945
BcnI CCSGG 1 cut(s) 167
BcoDI GTCTC 1 cut(s) 294
BfaI CTAG 1 cut(s) 1017
BfmI CTRYAG 1 cut(s) 300
BfoI RGCGCY 1 cut(s) 391
BisI GCNGC 4 cut(s) 300, 643, 959, 1026
BlsI GCNGC 4 cut(s) 301, 644, 960, 1027
Bme1390I CCNGG 1 cut(s) 167
Bme18I GGWCC 1 cut(s) 29
BmeRI GACNNNNNGTC 1 cut(s) 286
BmgT120I GGNCC 1 cut(s) 29
BmiI GGNNCC 3 cut(s) 339, 569, 1043
BmrFI CCNGG 1 cut(s) 167
BmrI ACTGGG 1 cut(s) 135
BmsI GCATC 2 cut(s) 204, 730
BmuI ACTGGG 1 cut(s) 135
Bpu14I TTCGAA 1 cut(s) 836
BpuEI CTTGAG 3 cut(s) 203, 666, 929
BpuMI CCSGG 1 cut(s) 167
BsaJI CCNNGG 3 cut(s) 174, 906, 971
BsaXI ACNNNNNCTCC 2 cut(s) 722, 752
Bsc4I CCNNNNNNNGG 2 cut(s) 632, 972
Bse1I ACTGG 3 cut(s) 141, 258, 1037
Bse3DI GCAATG 1 cut(s) 751
BseDI CCNNGG 3 cut(s) 174, 906, 971
BseGI GGATG 3 cut(s) 136, 250, 400
BseLI CCNNNNNNNGG 2 cut(s) 632, 972
BseMI GCAATG 1 cut(s) 751
BseMII CTCAG 1 cut(s) 666
BseNI ACTGG 3 cut(s) 141, 258, 1037
BseRI GAGGAG 3 cut(s) 575, 738, 955
BseSI GKGCMC 1 cut(s) 901
BseXI GCAGC 3 cut(s) 286, 654, 970
BseYI CCCAGC 1 cut(s) 509
Bsh1236I CGCG 1 cut(s) 1025
BshFI GGCC 2 cut(s) 54, 1015
BshNI GGYRCC 1 cut(s) 567
BsiHKAI GWGCWC 1 cut(s) 901
BsiSI CCGG 1 cut(s) 167
BslI CCNNNNNNNGG 2 cut(s) 632, 972
BsmAI GTCTC 1 cut(s) 294
BsnI GGCC 2 cut(s) 54, 1015
Bsp119I TTCGAA 1 cut(s) 836
Bsp1286I GDGCHC 2 cut(s) 167, 901
Bsp143I GATC 2 cut(s) 337, 818
Bsp19I CCATGG 1 cut(s) 971
BspACI CCGC 1 cut(s) 1025
BspANI GGCC 2 cut(s) 54, 1015
BspCNI CTCAG 1 cut(s) 667
BspFNI CGCG 1 cut(s) 1025
BspHI TCATGA 1 cut(s) 556
BspLI GGNNCC 3 cut(s) 339, 569, 1043
BspMAI CTGCAG 1 cut(s) 304
BspPI GGATC 3 cut(s) 332, 345, 826
BspT104I TTCGAA 1 cut(s) 836
BspT107I GGYRCC 1 cut(s) 567
BsrDI GCAATG 1 cut(s) 751
BsrI ACTGG 3 cut(s) 141, 258, 1037
BssECI CCNNGG 3 cut(s) 174, 906, 971
BssMI GATC 2 cut(s) 337, 818
BssT1I CCWWGG 1 cut(s) 971
Bst4CI ACNGT 1 cut(s) 284
BstBI TTCGAA 1 cut(s) 836
BstC8I GCNNGC 2 cut(s) 647, 913
BstDEI CTNAG 1 cut(s) 675
BstDSI CCRYGG 2 cut(s) 906, 971
BstF5I GGATG 3 cut(s) 136, 250, 400
BstFNI CGCG 1 cut(s) 1025
BstH2I RGCGCY 1 cut(s) 391
BstHHI GCGC 2 cut(s) 390, 1025
BstKTI GATC 2 cut(s) 340, 821
BstMAI GTCTC 1 cut(s) 294
BstMBI GATC 2 cut(s) 337, 818
BstMWI GCNNNNNNNGC 1 cut(s) 515
BstNSI RCATGY 2 cut(s) 274, 981
BstSCI CCNGG 1 cut(s) 165
BstSFI CTRYAG 1 cut(s) 300
BstSLI GKGCMC 1 cut(s) 901
BstUI CGCG 1 cut(s) 1025
BstV1I GCAGC 3 cut(s) 286, 654, 970
BstX2I RGATCY 2 cut(s) 337, 818
BstXI CCANNNNNNTGG 1 cut(s) 578
BstYI RGATCY 2 cut(s) 337, 818
BsuRI GGCC 2 cut(s) 54, 1015
BtgI CCRYGG 2 cut(s) 906, 971
BtsCI GGATG 3 cut(s) 136, 250, 400
BtsIMutI CAGTG 1 cut(s) 148
Cac8I GCNNGC 2 cut(s) 647, 913
CciI TCATGA 1 cut(s) 556
CfoI GCGC 2 cut(s) 390, 1025
Cfr13I GGNCC 1 cut(s) 29
Csp6I GTAC 5 cut(s) 153, 223, 373, 568, 744
CviAII CATG 6 cut(s) 56, 271, 485, 557, 972, 978
CviQI GTAC 5 cut(s) 153, 223, 373, 568, 744
DdeI CTNAG 1 cut(s) 675
DpnI GATC 2 cut(s) 339, 820
DpnII GATC 2 cut(s) 337, 818
DriI GACNNNNNGTC 1 cut(s) 286
EaeI YGGCCR 1 cut(s) 52
Eam1105I GACNNNNNGTC 1 cut(s) 286
Eco130I CCWWGG 1 cut(s) 971
Eco24I GRGCYC 1 cut(s) 167
Eco47I GGWCC 1 cut(s) 29
Eco47III AGCGCT 1 cut(s) 389
Eco57I CTGAAG 1 cut(s) 51
EcoT14I CCWWGG 1 cut(s) 971
EcoT38I GRGCYC 1 cut(s) 167
ErhI CCWWGG 1 cut(s) 971
FaeI CATG 6 cut(s) 59, 274, 488, 560, 975, 981
FatI CATG 6 cut(s) 55, 270, 484, 556, 971, 977
FauNDI CATATG 1 cut(s) 411
Fnu4HI GCNGC 4 cut(s) 300, 643, 959, 1026
FokI GGATG 3 cut(s) 123, 257, 407
FriOI GRGCYC 1 cut(s) 167
Fsp4HI GCNGC 4 cut(s) 300, 643, 959, 1026
FspBI CTAG 1 cut(s) 1017
GlaI GCGC 2 cut(s) 389, 1024
GluI GCNGC 4 cut(s) 300, 643, 959, 1026
GsaI CCCAGC 1 cut(s) 513
HaeII RGCGCY 1 cut(s) 391
HaeIII GGCC 2 cut(s) 54, 1015
HapII CCGG 1 cut(s) 167
HhaI GCGC 2 cut(s) 390, 1025
Hin1II CATG 6 cut(s) 59, 274, 488, 560, 975, 981
Hin6I GCGC 2 cut(s) 388, 1023
HinP1I GCGC 2 cut(s) 388, 1023
HpaII CCGG 1 cut(s) 167
HphI GGTGA 3 cut(s) 339, 728, 1048
Hpy166II GTNNAC 3 cut(s) 373, 899, 938
Hpy188I TCNGA 8 cut(s) 175, 213, 333, 394, 448, 466, 676, 1041
Hpy188III TCNNGA 9 cut(s) 89, 113, 242, 478, 557, 626, 683, 728, 946
Hpy8I GTNNAC 3 cut(s) 373, 899, 938
HpyAV CCTTC 5 cut(s) 251, 328, 354, 626, 764
HpyCH4III ACNGT 1 cut(s) 284
HpyCH4IV ACGT 1 cut(s) 155
HpyCH4V TGCA 7 cut(s) 270, 277, 302, 418, 796, 899, 981
HpyF10VI GCNNNNNNNGC 1 cut(s) 515
HpyF3I CTNAG 1 cut(s) 675
HpySE526I ACGT 1 cut(s) 155
Hsp92II CATG 6 cut(s) 59, 274, 488, 560, 975, 981
HspAI GCGC 2 cut(s) 388, 1023
KpnI GGTACC 1 cut(s) 571
Kzo9I GATC 2 cut(s) 337, 818
Lsp1109I GCAGC 3 cut(s) 286, 654, 970
LweI GCATC 2 cut(s) 204, 730
MaeI CTAG 1 cut(s) 1017
MaeII ACGT 1 cut(s) 155
MaeIII GTNAC 2 cut(s) 70, 702
MalI GATC 2 cut(s) 339, 820
MboI GATC 2 cut(s) 337, 818
MboII GAAGA 7 cut(s) 191, 230, 260, 417, 607, 641, 961
MflI RGATCY 2 cut(s) 337, 818
MhlI GDGCHC 2 cut(s) 167, 901
MlsI TGGCCA 1 cut(s) 54
MluCI AATT 6 cut(s) 21, 47, 196, 496, 541, 619
MluNI TGGCCA 1 cut(s) 54
MlyI GAGTC 3 cut(s) 446, 665, 746
MmeI TCCRAC 1 cut(s) 1019
Mox20I TGGCCA 1 cut(s) 54
MscI TGGCCA 1 cut(s) 54
MseI TTAA 2 cut(s) 62, 327
MslI CAYNNNNRTG 4 cut(s) 141, 410, 576, 976
Msp20I TGGCCA 1 cut(s) 54
MspI CCGG 1 cut(s) 167
MspR9I CCNGG 1 cut(s) 167
MvnI CGCG 1 cut(s) 1025
MwoI GCNNNNNNNGC 1 cut(s) 515
NciI CCSGG 1 cut(s) 167
NcoI CCATGG 1 cut(s) 971
NdeI CATATG 1 cut(s) 411
NdeII GATC 2 cut(s) 337, 818
NlaIII CATG 6 cut(s) 59, 274, 488, 560, 975, 981
NlaIV GGNNCC 3 cut(s) 339, 569, 1043
NmuCI GTSAC 1 cut(s) 70
NspI RCATGY 2 cut(s) 274, 981
NspV TTCGAA 1 cut(s) 836
PagI TCATGA 1 cut(s) 556
PcsI WCGNNNNNNNCGW 1 cut(s) 838
PfeI GAWTC 7 cut(s) 42, 116, 146, 170, 401, 467, 598
PkrI GCNGC 4 cut(s) 301, 644, 960, 1027
PleI GAGTC 3 cut(s) 445, 665, 745
PpsI GAGTC 3 cut(s) 445, 665, 745
PspFI CCCAGC 1 cut(s) 509
PspN4I GGNNCC 3 cut(s) 339, 569, 1043
PspPI GGNCC 1 cut(s) 29
PstI CTGCAG 1 cut(s) 304
PsuI RGATCY 2 cut(s) 337, 818
RsaI GTAC 5 cut(s) 154, 224, 374, 569, 745
RsaNI GTAC 5 cut(s) 153, 223, 373, 568, 744
RseI CAYNNNNRTG 4 cut(s) 141, 410, 576, 976
SaqAI TTAA 2 cut(s) 62, 327
SatI GCNGC 4 cut(s) 300, 643, 959, 1026
Sau3AI GATC 2 cut(s) 337, 818
Sau96I GGNCC 1 cut(s) 29
SchI GAGTC 3 cut(s) 446, 665, 746
ScrFI CCNGG 1 cut(s) 167
SduI GDGCHC 2 cut(s) 167, 901
SfaNI GCATC 2 cut(s) 204, 730
SfcI CTRYAG 1 cut(s) 300
SfuI TTCGAA 1 cut(s) 836
SinI GGWCC 1 cut(s) 29
SmiMI CAYNNNNRTG 4 cut(s) 141, 410, 576, 976
SmlI CTYRAG 3 cut(s) 218, 681, 944
SmoI CTYRAG 3 cut(s) 218, 681, 944
Sse9I AATT 6 cut(s) 21, 47, 196, 496, 541, 619
SsiI CCGC 1 cut(s) 1025
SspMI CTAG 1 cut(s) 1017
StyD4I CCNGG 1 cut(s) 165
StyI CCWWGG 1 cut(s) 971
TaaI ACNGT 1 cut(s) 284
TaiI ACGT 1 cut(s) 158
TaqI TCGA 1 cut(s) 836
TasI AATT 6 cut(s) 21, 47, 196, 496, 541, 619
TatI WGTACW 2 cut(s) 222, 743
TauI GCSGC 1 cut(s) 1028
TfiI GAWTC 7 cut(s) 42, 116, 146, 170, 401, 467, 598
Tru1I TTAA 2 cut(s) 62, 327
Tru9I TTAA 2 cut(s) 62, 327
TscAI CASTG 1 cut(s) 148
TseFI GTSAC 1 cut(s) 70
TseI GCWGC 3 cut(s) 299, 642, 958
Tsp45I GTSAC 1 cut(s) 70
TspDTI ATGAA 6 cut(s) 125, 261, 545, 630, 776, 933
TspGWI ACGGA 1 cut(s) 50
TspRI CASTG 1 cut(s) 148
VneI GTGCAC 1 cut(s) 897
VpaK11BI GGWCC 1 cut(s) 29
XapI RAATTY 3 cut(s) 47, 496, 541
XceI RCATGY 2 cut(s) 274, 981
XspI CTAG 1 cut(s) 1017
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.