RchiOBHm_Chr5g0065721

Belongs to the GRAS family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000175
Physical Location & Seq
Reverse (-)
71689587 .. 71690720
1134 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34158

Sequence Viewer

Length: 705 bp
ATGTCAGCTGCTGATATCTTAAAAGCTTACCAGACATATATCAAAGCATGCCCCTTCAAGTTGATGTCAAACATCTATGCTAACAAAACTATCTTCAAACTAACAGAGAAAGCAACAAGGCTTCACATAATTGATTTTGGTATTCTCTATGGCTACCAATGGCCTGGCCTTATCCAAAGTCTTGCGAAAAGACCCTCTGGACCTCCCATGCTTCGCATTACTGTCTTGAAGAGACACCGCCTAGCGAAATATTGCAAGAGATTCAATGGCCCATTTGAGTACAACTTCATAGCACAGGATTGGGAAACCATTCGATATCAAGATATCAAACTTGACAGAGATGAGTTGACTGTAGTGAACTGCTTGTGCAGATTAAGGAACTTACCTGAAGAAACAGAGATGAGGAGTCCAAGGGATAGAGTTTTGAAGCTGATCAGGAGAATCAACCCAGATATGTATATCCATGGCCTGGTTAATGGAACCTATAATGCACCCTTCTTCGAGATACGGTTCCGGGAGGCACTCTACCATTTCTCTTCCCTGTTTGATATGTTTGACGAGACTTTGCCCAGAGAAGATCAACAGAGGCTGCTCTACGAACAAGAGATATTAGGTAGAGATATTATCAATGTGATAGCATGTGAGGGTTCCAGGAGGCTTGAAAGGCCTGAAACATACAAGCAGTGGCAGATTAGAAACACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GRAS

Protein Analysis

234

Amino Acids

27.96

Weight (kDa)

9.33

Isoelectric Point (pI)

57.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRAS PF03514 3 - 231 1.7e-71 GRAS domain family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000175)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G46600 AT3G46600 AT3G46600 AT5G59450
fragaria_vesca FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36691 FvH4_3g36700 FvH4_3g36711 FvH4_3g36711 FvH4_3g36720 FvH4_3g36730 FvH4_3g36760
malus_domestica MD03G1088900.v1.1 MD03G1089100.v1.1 MD03G1089200.v1.1 MD03G1089300.v1.1 MD11G1097900.v1.1 MD11G1098000.v1.1 MD11G1098100.v1.1 MD11G1098400.v1.1 MD11G1098900.v1.1
prunus_persica Prupe.6G073300_v2.0.a1 Prupe.6G073400_v2.0.a1 Prupe.6G073400_v2.0.a1 Prupe.6G073500_v2.0.a1 Prupe.6G073600_v2.0.a1 Prupe.6G073700_v2.0.a1 Prupe.6G073800_v2.0.a1 Prupe.I004400_v2.0.a1 Prupe.I004500_v2.0.a1
pyrus_communis pycom03g07050 pycom03g07060 pycom03g07070 pycom03g07110 pycom04g11870 pycom11g08270 pycom11g08280
rosa_chinensis RchiOBHm_Chr5g0065591 RchiOBHm_Chr5g0065601 RchiOBHm_Chr5g0065621 RchiOBHm_Chr5g0065631 RchiOBHm_Chr5g0065641 RchiOBHm_Chr5g0065651 RchiOBHm_Chr5g0065671 RchiOBHm_Chr5g0065721 RchiOBHm_Chr5g0065731 RchiOBHm_Chr5g0065751 RchiOBHm_Chr5g0065791 RchiOBHm_Chr5g0065811
rosa_laevigata RLG00000035800 RLG00000035801 RLG00000035803 RLG00000035804 RLG00000035805 RLG00000035806 RLG00000035807 RLG00000035808 RLG00000035809 RLG00000035810 RLG00000035813 RLG00000035814 RLG00000035816
rosa_multiflora Rmu_co8233911.1_g000001 Rmu_co8258053.1_g000001 Rmu_co8279117.1_g000001 Rmu_sc0000235.1_g000004 Rmu_sc0000235.1_g000024 Rmu_sc0000235.1_g000060 Rmu_sc0000235.1_g000074 Rmu_sc0001010.1_g000001 Rmu_sc0001010.1_g000015 Rmu_sc0001010.1_g000030 Rmu_sc0001010.1_g000037 Rmu_sc0001010.1_g000043 Rmu_sc0001010.1_g000063 Rmu_sc0001010.1_g000066 Rmu_sc0003636.1_g000008 Rmu_sc0003636.1_g000011 Rmu_sc0003636.1_g000012 Rmu_sc0003636.1_g000015 Rmu_sc0005971.1_g000017 Rmu_sc0008231.1_g000001 Rmu_sc0032155.1_g000001
rosa_roxburghii Rroxscaffold_1G00015360 Rroxscaffold_1G00015390 Rroxscaffold_1G00015410 Rroxscaffold_1G00015430 Rroxscaffold_1G00015490 Rroxscaffold_1G00015520 Rroxscaffold_1G00015530 Rroxscaffold_1G00015550 Rroxscaffold_1G00015560 Rroxscaffold_1G00015580 Rroxscaffold_1G00015600 Rroxscaffold_1G00015610 Rroxscaffold_1G00015620 Rroxscaffold_1G00015630
rosa_rugosa Rorug05G0372800 Rorug05G0372800 Rorug05G0372800 Rorug05G0372800 Rorug05G0373100 Rorug05G0373100 Rorug05G0373200 Rorug05G0373300 Rorug05G0373400 Rorug05G0373500 Rorug05G0373600 Rorug05G0373700 Rorug05G0378700
rosa_samantha Rh5AG430900 Rh5AG431000 Rh5AG431100 Rh5AG431200 Rh5AG431700 Rh5AG431800 Rh5AG431900 Rh5AG432200 Rh5AG432500 Rh5BG445200 Rh5BG446000 Rh5BG447100 Rh5BG447200 Rh5BG447400 Rh5BG447800 Rh5BG447900 Rh5BG448000 Rh5BG448100 Rh5BG448300 Rh5BG448400 Rh5BG448500 Rh5BG448600 Rh5CG467400 Rh5CG468000 Rh5CG469000 Rh5CG469100 Rh5CG469400 Rh5CG469700 Rh5CG469900 Rh5CG470100 Rh5CG470200 Rh5CG470600 Rh5CG470700 Rh5CG470800 Rh5DG459500 Rh5DG459700 Rh5DG459800 Rh5DG460000 Rh5DG460900 Rh5DG461300 Rh5DG461500 Rh5DG461900 Rh5DG462000 Rh5DG462100
rosa_wichuraiana Rw5G040420 Rw5G040430 Rw5G040440 Rw5G040470 Rw5G040480 Rw5G040500 Rw5G040510 Rw5G040530 Rw5G040550 Rw5G040560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 469
AciI CCGC 1 cut(s) 238
AcuI CTGAAG 1 cut(s) 408
AfaI GTAC 1 cut(s) 281
AfiI CCNNNNNNNGG 1 cut(s) 469
AgsI TTSAA 6 cut(s) 58, 97, 229, 265, 427, 662
AjnI CCWGG 3 cut(s) 163, 468, 650
AluBI AGCT 3 cut(s) 8, 26, 430
AluI AGCT 3 cut(s) 8, 26, 430
Alw26I GTCTC 2 cut(s) 226, 554
AlwNI CAGNNNCTG 2 cut(s) 11, 589
AoxI GGCC 5 cut(s) 161, 166, 268, 466, 665
ApeKI GCWGC 2 cut(s) 8, 589
Asp700I GAANNNNTTC 1 cut(s) 309
AspS9I GGNCC 2 cut(s) 200, 269
AsuC2I CCSGG 1 cut(s) 515
AvaII GGWCC 1 cut(s) 200
BbvI GCAGC 1 cut(s) 576
BciT130I CCWGG 3 cut(s) 165, 470, 652
BclI TGATCA 1 cut(s) 432
BcnI CCSGG 1 cut(s) 515
BcoDI GTCTC 2 cut(s) 226, 554
BfaI CTAG 1 cut(s) 242
BfmI CTRYAG 1 cut(s) 351
BisI GCNGC 2 cut(s) 9, 590
BlsI GCNGC 2 cut(s) 10, 591
Bme1390I CCNGG 4 cut(s) 165, 470, 515, 652
Bme18I GGWCC 1 cut(s) 200
BmgT120I GGNCC 2 cut(s) 200, 269
BmiI GGNNCC 3 cut(s) 481, 512, 649
BmrFI CCNGG 4 cut(s) 165, 470, 515, 652
BpuMI CCSGG 1 cut(s) 515
BsaJI CCNNGG 2 cut(s) 410, 463
Bsc4I CCNNNNNNNGG 1 cut(s) 469
BseBI CCWGG 3 cut(s) 165, 470, 652
BseDI CCNNGG 2 cut(s) 410, 463
BseLI CCNNNNNNNGG 1 cut(s) 469
BseRI GAGGAG 1 cut(s) 418
BseXI GCAGC 1 cut(s) 576
BsgI GTGCAG 1 cut(s) 388
BshFI GGCC 5 cut(s) 163, 168, 270, 468, 667
BsiSI CCGG 1 cut(s) 514
BslI CCNNNNNNNGG 1 cut(s) 469
BsmAI GTCTC 2 cut(s) 226, 554
BsnI GGCC 5 cut(s) 163, 168, 270, 468, 667
Bsp143I GATC 2 cut(s) 432, 577
Bsp19I CCATGG 1 cut(s) 463
BspACI CCGC 1 cut(s) 238
BspANI GGCC 5 cut(s) 163, 168, 270, 468, 667
BspLI GGNNCC 3 cut(s) 481, 512, 649
BssECI CCNNGG 2 cut(s) 410, 463
BssMI GATC 2 cut(s) 432, 577
BssT1I CCWWGG 2 cut(s) 410, 463
Bst2UI CCWGG 3 cut(s) 165, 470, 652
Bst4CI ACNGT 3 cut(s) 223, 352, 510
Bst6I CTCTTC 2 cut(s) 224, 541
BstC8I GCNNGC 1 cut(s) 49
BstDSI CCRYGG 1 cut(s) 463
BstKTI GATC 2 cut(s) 435, 580
BstMAI GTCTC 2 cut(s) 226, 554
BstMBI GATC 2 cut(s) 432, 577
BstMWI GCNNNNNNNGC 1 cut(s) 664
BstNI CCWGG 3 cut(s) 165, 470, 652
BstNSI RCATGY 2 cut(s) 51, 642
BstSCI CCNGG 4 cut(s) 163, 468, 513, 650
BstSFI CTRYAG 1 cut(s) 351
BstV1I GCAGC 1 cut(s) 576
BstXI CCANNNNNNTGG 1 cut(s) 164
BsuRI GGCC 5 cut(s) 163, 168, 270, 468, 667
BtgI CCRYGG 1 cut(s) 463
BtsI GCAGTG 1 cut(s) 689
BtsIMutI CAGTG 1 cut(s) 689
Cac8I GCNNGC 1 cut(s) 49
CaiI CAGNNNCTG 2 cut(s) 11, 589
Cfr13I GGNCC 2 cut(s) 200, 269
Csp6I GTAC 1 cut(s) 280
CviAII CATG 4 cut(s) 48, 208, 464, 639
CviQI GTAC 1 cut(s) 280
DpnI GATC 2 cut(s) 434, 579
DpnII GATC 2 cut(s) 432, 577
Eam1104I CTCTTC 2 cut(s) 224, 541
EarI CTCTTC 2 cut(s) 224, 541
Eco130I CCWWGG 2 cut(s) 410, 463
Eco147I AGGCCT 1 cut(s) 667
Eco32I GATATC 3 cut(s) 16, 317, 325
Eco47I GGWCC 1 cut(s) 200
Eco57I CTGAAG 1 cut(s) 408
EcoRII CCWGG 3 cut(s) 163, 468, 650
EcoRV GATATC 3 cut(s) 16, 317, 325
EcoT14I CCWWGG 2 cut(s) 410, 463
ErhI CCWWGG 2 cut(s) 410, 463
FaeI CATG 4 cut(s) 51, 211, 467, 642
FatI CATG 4 cut(s) 47, 207, 463, 638
FbaI TGATCA 1 cut(s) 432
Fnu4HI GCNGC 2 cut(s) 9, 590
Fsp4HI GCNGC 2 cut(s) 9, 590
FspBI CTAG 1 cut(s) 242
GluI GCNGC 2 cut(s) 9, 590
HaeIII GGCC 5 cut(s) 163, 168, 270, 468, 667
HapII CCGG 1 cut(s) 514
Hin1II CATG 4 cut(s) 51, 211, 467, 642
HincII GTYRAC 1 cut(s) 348
HindII GTYRAC 1 cut(s) 348
HindIII AAGCTT 1 cut(s) 24
HinfI GANTC 3 cut(s) 261, 406, 441
HpaII CCGG 1 cut(s) 514
Hpy166II GTNNAC 2 cut(s) 348, 358
Hpy188III TCNNGA 5 cut(s) 198, 226, 320, 436, 502
Hpy8I GTNNAC 2 cut(s) 348, 358
HpyAV CCTTC 2 cut(s) 64, 505
HpyCH4III ACNGT 3 cut(s) 223, 352, 510
HpyCH4V TGCA 3 cut(s) 255, 369, 491
HpyF10VI GCNNNNNNNGC 1 cut(s) 664
Hsp92II CATG 4 cut(s) 51, 211, 467, 642
Ksp22I TGATCA 1 cut(s) 432
Kzo9I GATC 2 cut(s) 432, 577
Lsp1109I GCAGC 1 cut(s) 576
MaeI CTAG 1 cut(s) 242
MalI GATC 2 cut(s) 434, 579
MboI GATC 2 cut(s) 432, 577
MboII GAAGA 6 cut(s) 85, 241, 401, 490, 528, 587
MluCI AATT 1 cut(s) 129
MlyI GAGTC 1 cut(s) 415
MnlI CCTC 7 cut(s) 205, 213, 396, 511, 579, 637, 648
MroXI GAANNNNTTC 1 cut(s) 309
MseI TTAA 3 cut(s) 20, 374, 474
MspA1I CMGCKG 1 cut(s) 8
MspI CCGG 1 cut(s) 514
MspR9I CCNGG 4 cut(s) 165, 470, 515, 652
MvaI CCWGG 3 cut(s) 165, 470, 652
MwoI GCNNNNNNNGC 1 cut(s) 664
NciI CCSGG 1 cut(s) 515
NcoI CCATGG 1 cut(s) 463
NdeII GATC 2 cut(s) 432, 577
NlaIII CATG 4 cut(s) 51, 211, 467, 642
NlaIV GGNNCC 3 cut(s) 481, 512, 649
NspI RCATGY 2 cut(s) 51, 642
PaeI GCATGC 1 cut(s) 51
PceI AGGCCT 1 cut(s) 667
PdmI GAANNNNTTC 1 cut(s) 309
PfeI GAWTC 2 cut(s) 261, 441
PflMI CCANNNNNTGG 1 cut(s) 469
PfoI TCCNGGA 2 cut(s) 513, 650
PkrI GCNGC 2 cut(s) 10, 591
PleI GAGTC 1 cut(s) 414
PpsI GAGTC 1 cut(s) 414
Psp6I CCWGG 3 cut(s) 163, 468, 650
PspGI CCWGG 3 cut(s) 163, 468, 650
PspN4I GGNNCC 3 cut(s) 481, 512, 649
PspPI GGNCC 2 cut(s) 200, 269
PstNI CAGNNNCTG 2 cut(s) 11, 589
PvuII CAGCTG 1 cut(s) 8
RsaI GTAC 1 cut(s) 281
RsaNI GTAC 1 cut(s) 280
SaqAI TTAA 3 cut(s) 20, 374, 474
SatI GCNGC 2 cut(s) 9, 590
Sau3AI GATC 2 cut(s) 432, 577
Sau96I GGNCC 2 cut(s) 200, 269
SchI GAGTC 1 cut(s) 415
ScrFI CCNGG 4 cut(s) 165, 470, 515, 652
SetI ASST 8 cut(s) 10, 28, 205, 388, 432, 485, 616, 704
SfcI CTRYAG 1 cut(s) 351
SinI GGWCC 1 cut(s) 200
SphI GCATGC 1 cut(s) 51
Sse9I AATT 1 cut(s) 129
SseBI AGGCCT 1 cut(s) 667
SsiI CCGC 1 cut(s) 238
SspI AATATT 1 cut(s) 251
SspMI CTAG 1 cut(s) 242
StuI AGGCCT 1 cut(s) 667
StyD4I CCNGG 4 cut(s) 163, 468, 513, 650
StyI CCWWGG 2 cut(s) 410, 463
TaaI ACNGT 3 cut(s) 223, 352, 510
TaqI TCGA 2 cut(s) 313, 501
TasI AATT 1 cut(s) 129
TatI WGTACW 1 cut(s) 279
TfiI GAWTC 2 cut(s) 261, 441
Tru1I TTAA 3 cut(s) 20, 374, 474
Tru9I TTAA 3 cut(s) 20, 374, 474
TscAI CASTG 1 cut(s) 689
TseI GCWGC 2 cut(s) 8, 589
TspDTI ATGAA 1 cut(s) 277
TspRI CASTG 1 cut(s) 689
Van91I CCANNNNNTGG 1 cut(s) 469
VpaK11BI GGWCC 1 cut(s) 200
XceI RCATGY 2 cut(s) 51, 642
XmnI GAANNNNTTC 1 cut(s) 309
XspI CTAG 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.