Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0000883

Physical Location & Seq

Genomic Coordinates Reverse (-)

1804166 .. 1805332

Gene Structure 1167 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G013000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGAGTTCTACTGCTACTTCAAGTGGAAAAGTAAGGGGAGGAAGGGGACAAAATAAGCGCTATTGGACAACTAAGGAGGATAACACATTGATAGAATGCTTAATGGAACTCCATCAGAATACCAATTGGCGAGGTGACTCAGGCTTTAAAAATGGATACTTGAATAAATTAGAAACTATGCTAGAAGTCAAACTTCCGAATTCTGGGTTGAAGGCATCACCCCATATTGAATCAAGGGTGAAGACTTTGAAGGGAAAATATGGTGCTTTAGCTGATGCATTATCTCAAAGTGGTTTTGGGTGGAATGAAGAGGAGATGATGTTGGTATGTGAGAAAAGTGTATTTGATGCATGGGCGAAGAATAATAAGGATGCAAGTGGTTTGTATGGCAAGTCGTTTCCACATTACTATGCACTTGGAGAGATATACGGAAAAGATCGTGCTATTGGAACAAATGCTGGAAATGCTGATGATGATGAAGAAGACGTTAGGCGAGATGATGCAAGTGTTCATCAGAATAGAAGTGTGGGTGATGATTTTATTGAGGAGATGTTTTCACATCCTGATGGTGGGTCACAATATGGGGGTTCAGAATATGACGGATCTCAATTTGATGATGTTGAGGATTTAGAAGATGATGAGACAACTTTTACACAACCAAATCCCCAACCCTCAAGTGCCCAACAACGTGCCCAACAGAAGAGACCCGCACAAGATGTAGCAAGTGGTCCAAGTAATCCTCGTAGGAAGGTAAATGCTTTGAATGAAATGTCTAACAAATTTGGACTTATGGCTGAAGCCGTAGCCGGAATGGCACCTCAACTTGCAGGTTTGGTTAATGTTCTTTCAACAGAGAAGGATCTTGCTAATATGCAAGCTAAACTTGGTGGTGAATTGAGGAAAATAGAATTCCTAACTCCTTTGCAAGTATTTCGTATCACCAATATTTTAGCCAAAGAGCACGATTTGCTGAGGGTCTTCTTTACCATGACTGATGAAGAAAAAAAAGATTATGTATTTAATCTTATGGAGCATGGCTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

348

Amino Acids

38.6

Weight (kDa)

5.07

Isoelectric Point (pI)

49.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000883)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08720 FvH4_3g22621 FvH4_4g11702 FvH4_5g01520 FvH4_5g01520 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g36380 FvH4_6g01730 FvH4_6g09170 FvH4_6g20010 FvH4_6g28113
malus_domestica	MD06G1073100.v1.1
prunus_persica	Prupe.2G067700_v2.0.a1 Prupe.5G091500_v2.0.a1 Prupe.5G091500_v2.0.a1 Prupe.5G091500_v2.0.a1 Prupe.7G013000_v2.0.a1
pyrus_communis	pycom01g10330 pycom06g07250
rosa_chinensis	RchiOBHm_Chr7g0199161 RchiOBHm_Chr7g0199171
rosa_laevigata	RLG00000003809 RLG00000014802
rosa_multiflora	Rmu_sc0004791.1_g000001 Rmu_sc0006115.1_g000003 Rmu_sc0037059.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015450 Rroxscaffold_1G00015460 Rroxscaffold_3G00256990 Rroxscaffold_3G00257000 Rroxscaffold_4G00326050 Rroxscaffold_7G00182010
rosa_rugosa	Rorug03G0005500 Rorug03G0273000 Rorug05G0372800 Rorug05G0372900 Rorug07G0053100
rosa_samantha	Rh1BG202800 Rh1DG102500 Rh3AG101900 Rh3AG320900 Rh3CG107700 Rh3DG355100 Rh7AG176700 Rh7AG176800 Rh7AG365300 Rh7BG180300 Rh7CG185900 Rh7CG186000 Rh7CG384200 Rh7DG179700 Rh7DG179800
rosa_wichuraiana	Rw1G014270 Rw3G028010 Rw7G015540 Rw7G015550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	818
AccB1I	GGYRCC	1 cut(s)	814
AciI	CCGC	1 cut(s)	708
AclWI	GGATC	2 cut(s)	610, 867
AcsI	RAATTY	3 cut(s)	199, 779, 908
AcuI	CTGAAG	1 cut(s)	816
AfeI	AGCGCT	1 cut(s)	59
AfiI	CCNNNNNNNGG	2 cut(s)	203, 569
AgsI	TTSAA	7 cut(s)	21, 163, 211, 230, 250, 763, 849
AluBI	AGCT	2 cut(s)	272, 878
AluI	AGCT	2 cut(s)	272, 878
Alw21I	GWGCWC	1 cut(s)	963
Alw26I	GTCTC	2 cut(s)	635, 697
AlwI	GGATC	2 cut(s)	610, 867
Aor51HI	AGCGCT	1 cut(s)	59
ApoI	RAATTY	3 cut(s)	199, 779, 908
AspLEI	GCGC	1 cut(s)	60
AspS9I	GGNCC	1 cut(s)	728
AsuHPI	GGTGA	6 cut(s)	146, 210, 250, 542, 902, 931
AvaII	GGWCC	1 cut(s)	728
BaeGI	GKGCMC	2 cut(s)	682, 694
BanI	GGYRCC	1 cut(s)	814
BbsI	GAAGAC	3 cut(s)	248, 489, 970
Bbv12I	GWGCWC	1 cut(s)	963
BbvCI	CCTCAGC	1 cut(s)	971
BccI	CCATC	2 cut(s)	120, 560
BceAI	ACGGC	1 cut(s)	785
BcgI	CGANNNNNNTGC	2 cut(s)	914, 948
BciVI	GTATCC	1 cut(s)	149
BcoDI	GTCTC	2 cut(s)	635, 697
BfaI	CTAG	1 cut(s)	182
BfoI	RGCGCY	1 cut(s)	61
BfuAI	ACCTGC	1 cut(s)	818
BfuI	GTATCC	1 cut(s)	149
BglI	GCCNNNNNGGC	1 cut(s)	812
Bme18I	GGWCC	1 cut(s)	728
BmgT120I	GGNCC	1 cut(s)	728
BmiI	GGNNCC	1 cut(s)	816
BmsI	GCATC	5 cut(s)	224, 265, 337, 361, 490
BpiI	GAAGAC	3 cut(s)	248, 489, 970
Bpu10I	CCTNAGC	1 cut(s)	971
BpuEI	CTTGAG	1 cut(s)	658
BsaI	GGTCTC	1 cut(s)	697
BsaXI	ACNNNNNCTCC	2 cut(s)	305, 335
Bsc4I	CCNNNNNNNGG	2 cut(s)	203, 569
BseGI	GGATG	2 cut(s)	376, 559
BseLI	CCNNNNNNNGG	2 cut(s)	203, 569
BseMII	CTCAG	2 cut(s)	153, 962
BseRI	GAGGAG	2 cut(s)	326, 560
BseSI	GKGCMC	2 cut(s)	682, 694
BshNI	GGYRCC	1 cut(s)	814
BsiHKAI	GWGCWC	1 cut(s)	963
BsiSI	CCGG	1 cut(s)	807
BslFI	GGGAC	1 cut(s)	60
BslI	CCNNNNNNNGG	2 cut(s)	203, 569
BsmAI	GTCTC	2 cut(s)	635, 697
BsmFI	GGGAC	1 cut(s)	60
BsmI	GAATGC	1 cut(s)	101
Bso31I	GGTCTC	1 cut(s)	697
Bsp1286I	GDGCHC	3 cut(s)	682, 694, 963
Bsp143I	GATC	3 cut(s)	436, 602, 859
BspACI	CCGC	1 cut(s)	708
BspCNI	CTCAG	2 cut(s)	152, 963
BspLI	GGNNCC	1 cut(s)	816
BspMI	ACCTGC	1 cut(s)	818
BspPI	GGATC	2 cut(s)	610, 867
BspT107I	GGYRCC	1 cut(s)	814
BspTNI	GGTCTC	1 cut(s)	697
BssMI	GATC	3 cut(s)	436, 602, 859
Bst6I	CTCTTC	2 cut(s)	303, 695
BstAPI	GCANNNNNTGC	1 cut(s)	967
BstC8I	GCNNGC	1 cut(s)	876
BstDEI	CTNAG	3 cut(s)	72, 139, 971
BstF5I	GGATG	2 cut(s)	376, 559
BstH2I	RGCGCY	1 cut(s)	61
BstHHI	GCGC	1 cut(s)	60
BstKTI	GATC	3 cut(s)	439, 605, 862
BstMAI	GTCTC	2 cut(s)	635, 697
BstMBI	GATC	3 cut(s)	436, 602, 859
BstMWI	GCNNNNNNNGC	3 cut(s)	464, 812, 967
BstSLI	GKGCMC	2 cut(s)	682, 694
BstV2I	GAAGAC	3 cut(s)	248, 489, 970
BstX2I	RGATCY	2 cut(s)	602, 859
BstYI	RGATCY	2 cut(s)	602, 859
BsuI	GTATCC	1 cut(s)	149
BtsCI	GGATG	2 cut(s)	376, 559
BveI	ACCTGC	1 cut(s)	818
Cac8I	GCNNGC	1 cut(s)	876
CfoI	GCGC	1 cut(s)	60
Cfr13I	GGNCC	1 cut(s)	728
CviAII	CATG	3 cut(s)	351, 988, 1034
CviJI	RGCY	8 cut(s)	144, 272, 794, 800, 806, 878, 953, 1038
CviKI_1	RGCY	8 cut(s)	144, 272, 794, 800, 806, 878, 953, 1038
DdeI	CTNAG	3 cut(s)	72, 139, 971
DpnI	GATC	3 cut(s)	438, 604, 861
DpnII	GATC	3 cut(s)	436, 602, 859
DraI	TTTAAA	1 cut(s)	148
Eam1104I	CTCTTC	2 cut(s)	303, 695
EarI	CTCTTC	2 cut(s)	303, 695
Eco31I	GGTCTC	1 cut(s)	697
Eco47I	GGWCC	1 cut(s)	728
Eco47III	AGCGCT	1 cut(s)	59
Eco57I	CTGAAG	1 cut(s)	816
EcoRI	GAATTC	2 cut(s)	199, 908
EcoT22I	ATGCAT	2 cut(s)	280, 352
FaeI	CATG	3 cut(s)	354, 991, 1037
FalI	AAGNNNNNCTT	4 cut(s)	177, 209, 867, 899
FaqI	GGGAC	1 cut(s)	60
FatI	CATG	3 cut(s)	350, 987, 1033
FauI	CCCGC	1 cut(s)	715
FokI	GGATG	2 cut(s)	383, 546
FspBI	CTAG	1 cut(s)	182
GlaI	GCGC	1 cut(s)	59
HaeII	RGCGCY	1 cut(s)	61
HapII	CCGG	1 cut(s)	807
HhaI	GCGC	1 cut(s)	60
Hin1II	CATG	3 cut(s)	354, 991, 1037
Hin6I	GCGC	1 cut(s)	58
HinP1I	GCGC	1 cut(s)	58
HinfI	GANTC	2 cut(s)	137, 230
HpaII	CCGG	1 cut(s)	807
HphI	GGTGA	6 cut(s)	146, 210, 250, 542, 902, 931
Hpy188I	TCNGA	4 cut(s)	117, 198, 516, 592
Hpy188III	TCNNGA	1 cut(s)	563
HpyAV	CCTTC	5 cut(s)	36, 205, 244, 742, 850
HpyCH4IV	ACGT	2 cut(s)	486, 688
HpyCH4V	TGCA	8 cut(s)	278, 350, 374, 413, 503, 827, 874, 925
HpyF10VI	GCNNNNNNNGC	3 cut(s)	464, 812, 967
HpyF3I	CTNAG	3 cut(s)	72, 139, 971
HpySE526I	ACGT	2 cut(s)	486, 688
Hsp92II	CATG	3 cut(s)	354, 991, 1037
HspAI	GCGC	1 cut(s)	58
Kzo9I	GATC	3 cut(s)	436, 602, 859
LmnI	GCTCC	1 cut(s)	1030
LpnPI	CCDG	6 cut(s)	126, 189, 444, 576, 813, 820
LweI	GCATC	5 cut(s)	224, 265, 337, 361, 490
MaeI	CTAG	1 cut(s)	182
MaeII	ACGT	2 cut(s)	486, 688
MaeIII	GTNAC	2 cut(s)	134, 573
MalI	GATC	3 cut(s)	438, 604, 861
MboI	GATC	3 cut(s)	436, 602, 859
MboII	GAAGA	9 cut(s)	253, 320, 370, 491, 494, 644, 712, 970, 1010
MfeI	CAATTG	1 cut(s)	124
MflI	RGATCY	2 cut(s)	602, 859
MhlI	GDGCHC	3 cut(s)	682, 694, 963
MluCI	AATT	7 cut(s)	124, 167, 199, 608, 779, 893, 908
MlyI	GAGTC	1 cut(s)	131
Mph1103I	ATGCAT	2 cut(s)	280, 352
MseI	TTAA	4 cut(s)	101, 147, 837, 1020
MslI	CAYNNNNRTG	2 cut(s)	408, 564
MspI	CCGG	1 cut(s)	807
MunI	CAATTG	1 cut(s)	124
Mva1269I	GAATGC	1 cut(s)	101
MwoI	GCNNNNNNNGC	3 cut(s)	464, 812, 967
NdeII	GATC	3 cut(s)	436, 602, 859
NlaIII	CATG	3 cut(s)	354, 991, 1037
NlaIV	GGNNCC	1 cut(s)	816
NmuCI	GTSAC	2 cut(s)	134, 573
NsiI	ATGCAT	2 cut(s)	280, 352
PctI	GAATGC	1 cut(s)	101
PfeI	GAWTC	1 cut(s)	230
PleI	GAGTC	1 cut(s)	131
PpsI	GAGTC	1 cut(s)	131
PspN4I	GGNNCC	1 cut(s)	816
PspPI	GGNCC	1 cut(s)	728
PsuI	RGATCY	2 cut(s)	602, 859
RseI	CAYNNNNRTG	2 cut(s)	408, 564
SaqAI	TTAA	4 cut(s)	101, 147, 837, 1020
Sau3AI	GATC	3 cut(s)	436, 602, 859
Sau96I	GGNCC	1 cut(s)	728
SchI	GAGTC	1 cut(s)	131
SduI	GDGCHC	3 cut(s)	682, 694, 963
SetI	ASST	8 cut(s)	136, 274, 489, 691, 753, 820, 832, 880
SfaNI	GCATC	5 cut(s)	224, 265, 337, 361, 490
SinI	GGWCC	1 cut(s)	728
SmiMI	CAYNNNNRTG	2 cut(s)	408, 564
SmlI	CTYRAG	1 cut(s)	673
SmoI	CTYRAG	1 cut(s)	673
Sse9I	AATT	7 cut(s)	124, 167, 199, 608, 779, 893, 908
SsiI	CCGC	1 cut(s)	708
SspI	AATATT	1 cut(s)	946
SspMI	CTAG	1 cut(s)	182
TaiI	ACGT	2 cut(s)	489, 691
TasI	AATT	7 cut(s)	124, 167, 199, 608, 779, 893, 908
TfiI	GAWTC	1 cut(s)	230
Tru1I	TTAA	4 cut(s)	101, 147, 837, 1020
Tru9I	TTAA	4 cut(s)	101, 147, 837, 1020
TseFI	GTSAC	2 cut(s)	134, 573
Tsp45I	GTSAC	2 cut(s)	134, 573
TspDTI	ATGAA	5 cut(s)	321, 492, 500, 780, 1011
TspGWI	ACGGA	2 cut(s)	444, 615
VpaK11BI	GGWCC	1 cut(s)	728
XapI	RAATTY	3 cut(s)	199, 779, 908
XspI	CTAG	1 cut(s)	182
Zsp2I	ATGCAT	2 cut(s)	280, 352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.