Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000883

Physical Location & Seq

Genomic Coordinates Forward (+)

15428529 .. 15429826

Gene Structure 1298 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g11702.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGAAGCTAAACTTCCGGGTCATGGATTATTAGCAAACCCACATATTGAGTCCCGTATTAAAACTTTGAAGGCTAAATATGCTGCTTTGTCAGAGATGCTAAACCAAAGCGGATTTAGCTGGAACGAACAAGAAATGATGTTAGTATGCGAGCAAAGTGTATTTACTGAGTGGGTAGAGAAAAGAAACAAAGATGCTGTTGGGTTATATGGTAAGCCATTTCGACATTACTATAATCTTGGAGAGATATATGGAAGAGATCGTGCAAATGGACAAAATGTGGGAAATGCTGATGATGATGAAGAGGAAATTAGACGTGAGAATACCAACGTTGATCCATTAGAGGATGAGACTCTCTTTGACAATGTGAACCAAAGTGCAAATATGGAACCACAACATGAAGGGTCTGAAGATGTTGATGTATCCTTTACACAGCCTAGTCCTCAAACCCCAAGTGTCTTGCAACAGATTCCTTCACAAAGTGTTGCTTCCAGCAATAGTCGTCGGAAAGGAAAAGCATTGGATGAAATGAGCAAGAACTTTTCTCTCATGGCAAAAGCTGTGGCTGGAATGGCACCTAAGCTTGATGGGCTGGGGTTAATGTTTTATCTACAGACAAAGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

209

Amino Acids

23.32

Weight (kDa)

5.0

Isoelectric Point (pI)

60.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_3	PF12776	13 - 55	4.6e-06	Myb/SANT-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000883)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08720 FvH4_3g22621 FvH4_4g11702 FvH4_5g01520 FvH4_5g01520 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g36380 FvH4_6g01730 FvH4_6g09170 FvH4_6g20010 FvH4_6g28113
malus_domestica	MD06G1073100.v1.1
prunus_persica	Prupe.2G067700_v2.0.a1 Prupe.5G091500_v2.0.a1 Prupe.5G091500_v2.0.a1 Prupe.5G091500_v2.0.a1 Prupe.7G013000_v2.0.a1
pyrus_communis	pycom01g10330 pycom06g07250
rosa_chinensis	RchiOBHm_Chr7g0199161 RchiOBHm_Chr7g0199171
rosa_laevigata	RLG00000003809 RLG00000014802
rosa_multiflora	Rmu_sc0004791.1_g000001 Rmu_sc0006115.1_g000003 Rmu_sc0037059.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015450 Rroxscaffold_1G00015460 Rroxscaffold_3G00256990 Rroxscaffold_3G00257000 Rroxscaffold_4G00326050 Rroxscaffold_7G00182010
rosa_rugosa	Rorug03G0005500 Rorug03G0273000 Rorug05G0372800 Rorug05G0372900 Rorug07G0053100
rosa_samantha	Rh1BG202800 Rh1DG102500 Rh3AG101900 Rh3AG320900 Rh3CG107700 Rh3DG355100 Rh7AG176700 Rh7AG176800 Rh7AG365300 Rh7BG180300 Rh7CG185900 Rh7CG186000 Rh7CG384200 Rh7DG179700 Rh7DG179800
rosa_wichuraiana	Rw1G014270 Rw3G028010 Rw7G015540 Rw7G015550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	574
AciI	CCGC	1 cut(s)	111
AclI	AACGTT	1 cut(s)	330
AclWI	GGATC	1 cut(s)	329
AcuI	CTGAAG	1 cut(s)	429
AdeI	CACNNNGTG	1 cut(s)	482
AfiI	CCNNNNNNNGG	1 cut(s)	23
AgsI	TTSAA	1 cut(s)	70
AjiI	CACGTC	1 cut(s)	317
AluBI	AGCT	4 cut(s)	8, 120, 560, 583
AluI	AGCT	4 cut(s)	8, 120, 560, 583
Alw26I	GTCTC	1 cut(s)	344
AlwI	GGATC	1 cut(s)	329
ApeKI	GCWGC	1 cut(s)	83
AsuC2I	CCSGG	1 cut(s)	18
BanI	GGYRCC	1 cut(s)	574
BbvI	GCAGC	1 cut(s)	70
BccI	CCATC	1 cut(s)	581
BciVI	GTATCC	1 cut(s)	433
BcnI	CCSGG	1 cut(s)	18
BcoDI	GTCTC	1 cut(s)	344
BfaI	CTAG	1 cut(s)	438
BfmI	CTRYAG	1 cut(s)	611
BfuI	GTATCC	1 cut(s)	433
BisI	GCNGC	1 cut(s)	84
BlsI	GCNGC	1 cut(s)	85
Bme1390I	CCNGG	1 cut(s)	18
BmgBI	CACGTC	1 cut(s)	317
BmiI	GGNNCC	2 cut(s)	390, 576
BmrFI	CCNGG	1 cut(s)	18
BmsI	GCATC	2 cut(s)	87, 184
Bpu10I	CCTNAGC	1 cut(s)	579
BpuMI	CCSGG	1 cut(s)	18
Bsc4I	CCNNNNNNNGG	1 cut(s)	23
BseGI	GGATG	2 cut(s)	352, 529
BseLI	CCNNNNNNNGG	1 cut(s)	23
BseMII	CTCAG	1 cut(s)	159
BseXI	GCAGC	1 cut(s)	70
BseYI	CCCAGC	1 cut(s)	592
BshNI	GGYRCC	1 cut(s)	574
BsiSI	CCGG	1 cut(s)	17
BslFI	GGGAC	1 cut(s)	37
BslI	CCNNNNNNNGG	1 cut(s)	23
BsmAI	GTCTC	1 cut(s)	344
BsmFI	GGGAC	1 cut(s)	37
Bsp143I	GATC	2 cut(s)	259, 334
BspACI	CCGC	1 cut(s)	111
BspCNI	CTCAG	1 cut(s)	160
BspLI	GGNNCC	2 cut(s)	390, 576
BspPI	GGATC	1 cut(s)	329
BspT107I	GGYRCC	1 cut(s)	574
BssMI	GATC	2 cut(s)	259, 334
Bst6I	CTCTTC	2 cut(s)	250, 297
BstC8I	GCNNGC	1 cut(s)	152
BstDEI	CTNAG	2 cut(s)	168, 579
BstF5I	GGATG	2 cut(s)	352, 529
BstKTI	GATC	2 cut(s)	262, 337
BstMAI	GTCTC	1 cut(s)	344
BstMBI	GATC	2 cut(s)	259, 334
BstMWI	GCNNNNNNNGC	4 cut(s)	80, 117, 572, 589
BstSCI	CCNGG	1 cut(s)	16
BstSFI	CTRYAG	1 cut(s)	611
BstV1I	GCAGC	1 cut(s)	70
BsuI	GTATCC	1 cut(s)	433
BtrI	CACGTC	1 cut(s)	317
BtsCI	GGATG	2 cut(s)	352, 529
Cac8I	GCNNGC	1 cut(s)	152
CspCI	CAANNNNNGTGG	2 cut(s)	543, 578
CviAII	CATG	3 cut(s)	23, 398, 550
CviJI	RGCY	9 cut(s)	8, 74, 120, 217, 436, 560, 566, 583, 592
CviKI_1	RGCY	9 cut(s)	8, 74, 120, 217, 436, 560, 566, 583, 592
DdeI	CTNAG	2 cut(s)	168, 579
DpnI	GATC	2 cut(s)	261, 336
DpnII	GATC	2 cut(s)	259, 334
DraIII	CACNNNGTG	1 cut(s)	482
Eam1104I	CTCTTC	2 cut(s)	250, 297
EarI	CTCTTC	2 cut(s)	250, 297
Eco57I	CTGAAG	1 cut(s)	429
FaeI	CATG	3 cut(s)	26, 401, 553
FalI	AAGNNNNNCTT	3 cut(s)	29, 472, 504
FaqI	GGGAC	1 cut(s)	37
FatI	CATG	3 cut(s)	22, 397, 549
Fnu4HI	GCNGC	1 cut(s)	84
FokI	GGATG	2 cut(s)	359, 536
Fsp4HI	GCNGC	1 cut(s)	84
FspBI	CTAG	1 cut(s)	438
GluI	GCNGC	1 cut(s)	84
GsaI	CCCAGC	1 cut(s)	596
HapII	CCGG	1 cut(s)	17
Hin1II	CATG	3 cut(s)	26, 401, 553
HindIII	AAGCTT	1 cut(s)	581
HinfI	GANTC	3 cut(s)	50, 352, 469
HpaII	CCGG	1 cut(s)	17
Hpy166II	GTNNAC	1 cut(s)	370
Hpy188I	TCNGA	3 cut(s)	94, 409, 507
Hpy8I	GTNNAC	1 cut(s)	370
Hpy99I	CGWCG	1 cut(s)	507
HpyAV	CCTTC	3 cut(s)	64, 395, 483
HpyCH4IV	ACGT	2 cut(s)	316, 330
HpyCH4V	TGCA	3 cut(s)	266, 380, 463
HpyF10VI	GCNNNNNNNGC	4 cut(s)	80, 117, 572, 589
HpyF3I	CTNAG	2 cut(s)	168, 579
HpySE526I	ACGT	2 cut(s)	316, 330
Hsp92II	CATG	3 cut(s)	26, 401, 553
Kzo9I	GATC	2 cut(s)	259, 334
LpnPI	CCDG	5 cut(s)	30, 106, 505, 552, 578
Lsp1109I	GCAGC	1 cut(s)	70
LweI	GCATC	2 cut(s)	87, 184
MaeI	CTAG	1 cut(s)	438
MaeII	ACGT	2 cut(s)	316, 330
MalI	GATC	2 cut(s)	261, 336
MboI	GATC	2 cut(s)	259, 334
MboII	GAAGA	3 cut(s)	267, 314, 422
MluCI	AATT	1 cut(s)	309
MlyI	GAGTC	2 cut(s)	59, 346
MmeI	TCCRAC	1 cut(s)	485
MnlI	CCTC	3 cut(s)	298, 337, 453
MseI	TTAA	3 cut(s)	60, 599, 625
MspI	CCGG	1 cut(s)	17
MspR9I	CCNGG	1 cut(s)	18
MwoI	GCNNNNNNNGC	4 cut(s)	80, 117, 572, 589
NciI	CCSGG	1 cut(s)	18
NdeII	GATC	2 cut(s)	259, 334
NlaIII	CATG	3 cut(s)	26, 401, 553
NlaIV	GGNNCC	2 cut(s)	390, 576
PfeI	GAWTC	1 cut(s)	469
PkrI	GCNGC	1 cut(s)	85
PleI	GAGTC	2 cut(s)	58, 346
PpsI	GAGTC	2 cut(s)	58, 346
Psp1406I	AACGTT	1 cut(s)	330
PspFI	CCCAGC	1 cut(s)	592
PspN4I	GGNNCC	2 cut(s)	390, 576
SaqAI	TTAA	3 cut(s)	60, 599, 625
SatI	GCNGC	1 cut(s)	84
Sau3AI	GATC	2 cut(s)	259, 334
SchI	GAGTC	2 cut(s)	59, 346
ScrFI	CCNGG	1 cut(s)	18
SetI	ASST	7 cut(s)	10, 122, 319, 333, 562, 580, 585
SfaNI	GCATC	2 cut(s)	87, 184
SfcI	CTRYAG	1 cut(s)	611
Sse9I	AATT	1 cut(s)	309
SsiI	CCGC	1 cut(s)	111
SspMI	CTAG	1 cut(s)	438
StyD4I	CCNGG	1 cut(s)	16
TaiI	ACGT	2 cut(s)	319, 333
TaqI	TCGA	1 cut(s)	223
TasI	AATT	1 cut(s)	309
TfiI	GAWTC	1 cut(s)	469
Tru1I	TTAA	3 cut(s)	60, 599, 625
Tru9I	TTAA	3 cut(s)	60, 599, 625
TseI	GCWGC	1 cut(s)	83
TspDTI	ATGAA	3 cut(s)	315, 414, 540
XspI	CTAG	1 cut(s)	438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.