Rw1G014270
MYB Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000883
Physical Location & Seq
Forward (+)
31861167 .. 31862151
985 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G014270.1

Sequence Viewer

Length: 876 bp
ATGATAGAAGCCAAACTTCCAAACTGTGGGATACTGGCAAATCCACACATTGAATCAAGAATAAAGACATTGAAAGGGAAATATGTTGTATTAAGCGAAGCATTATCTCAGAGTGGTTTTGGATGGAATGAAGAAGCAATGATGTTGGATTGTGAAAGAAGTGTATTCGATGAGTGGGCAAAGAACAAAAAGGATGCAAAAGGTTTGTATGGTAAACCATTTGAACATTATTATGCCCTCGGAGAGATATATGGAAAAGATCGTGCAATGGGAACAAATGCTGGAAATGCTGAAGATGATGAAGAAGAAGTTAGGGAAGAGGATGCAAGCATGAACCAAAAGGGTGTACGAGCTGATGACTTTTTTGAACAAATGAACATGACTACTGATGGTGGATCTCAGTATAGGGGATCACAATTTGAGGGGCTTGGTGAAATGGAAGATGATGATATATCTTTTATACAACCAAGTCCCCCCCAACCACCAAGTGCCAAGCAACGTGCCAAACAGCAGAGGTCAACTCAAGATGTAACAAATGCTCCAAATAATACTCGTAGAAAGGCAAGAGCTTTGGATGATATGGCTAAAAAATTTGGAGTGATCACTGAAGCCATTGCAGGAATGGCTCCAAAGTTTGAAGGCTTGATTAATGTTCTCTCAAAAGATAAGGATCTTGCTGATATGCAAGGCAAACTTGGTGGTGAGCTGAGGAAAATGGATTTCCTATCTCCATTGCAGGTATTTCACGTCACCAAAAAATTAGCTAAAGAGCATGACTTGTTAAGGGTCTTCTTCACCATGACTGATGAGGAAAAGAAGGATTACATAATCAACCTTCTGCAATATGGCCTACAGAGAATGGATGCTTGGACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

291

Amino Acids

32.87

Weight (kDa)

5.18

Isoelectric Point (pI)

45.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 727
AccB7I CCANNNNNTGG 1 cut(s) 26
AclWI GGATC 3 cut(s) 403, 418, 678
AcsI RAATTY 1 cut(s) 590
AcuI CTGAAG 2 cut(s) 312, 627
AdeI CACNNNGTG 1 cut(s) 488
AfaI GTAC 1 cut(s) 348
AfiI CCNNNNNNNGG 1 cut(s) 26
AgsI TTSAA 5 cut(s) 53, 73, 224, 368, 638
AjiI CACGTC 1 cut(s) 748
AjuI GAANNNNNNNTTGG 1 cut(s) 850
AluBI AGCT 4 cut(s) 353, 569, 706, 764
AluI AGCT 4 cut(s) 353, 569, 706, 764
AlwI GGATC 3 cut(s) 403, 418, 678
AoxI GGCC 1 cut(s) 847
ApoI RAATTY 1 cut(s) 590
AseI ATTAAT 1 cut(s) 648
AsuHPI GGTGA 4 cut(s) 443, 713, 742, 787
BbsI GAAGAC 1 cut(s) 781
BbvCI CCTCAGC 1 cut(s) 707
BccI CCATC 2 cut(s) 117, 383
BciVI GTATCC 1 cut(s) 24
BclI TGATCA 1 cut(s) 600
BfmI CTRYAG 1 cut(s) 851
BfuAI ACCTGC 1 cut(s) 727
BfuI GTATCC 1 cut(s) 24
BmgBI CACGTC 1 cut(s) 748
BmiI GGNNCC 1 cut(s) 627
BmsI GCATC 3 cut(s) 184, 313, 853
BpiI GAAGAC 1 cut(s) 781
BplI GAGNNNNNCTC 2 cut(s) 505, 537
Bpu10I CCTNAGC 1 cut(s) 707
BpuEI CTTGAG 1 cut(s) 507
BsaBI GATNNNNATC 1 cut(s) 669
BsaJI CCNNGG 1 cut(s) 238
BsaXI ACNNNNNCTCC 2 cut(s) 523, 553
Bsc4I CCNNNNNNNGG 1 cut(s) 26
Bse1I ACTGG 1 cut(s) 39
Bse3DI GCAATG 4 cut(s) 144, 273, 612, 731
Bse8I GATNNNNATC 1 cut(s) 669
BseDI CCNNGG 1 cut(s) 238
BseGI GGATG 5 cut(s) 128, 199, 328, 580, 868
BseJI GATNNNNATC 1 cut(s) 669
BseLI CCNNNNNNNGG 1 cut(s) 26
BseMI GCAATG 4 cut(s) 144, 273, 612, 731
BseMII CTCAG 3 cut(s) 122, 413, 698
BseNI ACTGG 1 cut(s) 39
BshFI GGCC 1 cut(s) 849
BslFI GGGAC 1 cut(s) 456
BslI CCNNNNNNNGG 1 cut(s) 26
BsmFI GGGAC 1 cut(s) 456
BsnI GGCC 1 cut(s) 849
Bsp143I GATC 5 cut(s) 259, 395, 410, 600, 670
BspANI GGCC 1 cut(s) 849
BspCNI CTCAG 3 cut(s) 121, 412, 699
BspLI GGNNCC 1 cut(s) 627
BspMI ACCTGC 1 cut(s) 727
BspPI GGATC 3 cut(s) 403, 418, 678
BsrDI GCAATG 4 cut(s) 144, 273, 612, 731
BsrI ACTGG 1 cut(s) 39
BssECI CCNNGG 1 cut(s) 238
BssMI GATC 5 cut(s) 259, 395, 410, 600, 670
Bst4CI ACNGT 1 cut(s) 26
Bst6I CTCTTC 1 cut(s) 312
BstC8I GCNNGC 1 cut(s) 328
BstDEI CTNAG 4 cut(s) 108, 399, 707, 873
BstF5I GGATG 5 cut(s) 128, 199, 328, 580, 868
BstKTI GATC 5 cut(s) 262, 398, 413, 603, 673
BstMBI GATC 5 cut(s) 259, 395, 410, 600, 670
BstMWI GCNNNNNNNGC 2 cut(s) 287, 623
BstSFI CTRYAG 1 cut(s) 851
BstV2I GAAGAC 1 cut(s) 781
BstX2I RGATCY 2 cut(s) 395, 670
BstYI RGATCY 2 cut(s) 395, 670
BsuI GTATCC 1 cut(s) 24
BsuRI GGCC 1 cut(s) 849
BtrI CACGTC 1 cut(s) 748
BtsCI GGATG 5 cut(s) 128, 199, 328, 580, 868
BtsIMutI CAGTG 1 cut(s) 603
BveI ACCTGC 1 cut(s) 727
Cac8I GCNNGC 1 cut(s) 328
Csp6I GTAC 1 cut(s) 347
CspCI CAANNNNNGTGG 2 cut(s) 679, 714
CviAII CATG 4 cut(s) 331, 379, 773, 799
CviQI GTAC 1 cut(s) 347
DdeI CTNAG 4 cut(s) 108, 399, 707, 873
DpnI GATC 5 cut(s) 261, 397, 412, 602, 672
DpnII GATC 5 cut(s) 259, 395, 410, 600, 670
DraIII CACNNNGTG 1 cut(s) 488
Eam1104I CTCTTC 1 cut(s) 312
EarI CTCTTC 1 cut(s) 312
Eco57I CTGAAG 2 cut(s) 312, 627
FaeI CATG 4 cut(s) 334, 382, 776, 802
FalI AAGNNNNNCTT 3 cut(s) 32, 678, 710
FaqI GGGAC 1 cut(s) 456
FatI CATG 4 cut(s) 330, 378, 772, 798
FbaI TGATCA 1 cut(s) 600
FokI GGATG 4 cut(s) 135, 206, 335, 587
HaeIII GGCC 1 cut(s) 849
Hin1II CATG 4 cut(s) 334, 382, 776, 802
HincII GTYRAC 1 cut(s) 519
HindII GTYRAC 1 cut(s) 519
HinfI GANTC 1 cut(s) 53
HphI GGTGA 4 cut(s) 443, 713, 742, 787
Hpy166II GTNNAC 3 cut(s) 215, 347, 519
Hpy188I TCNGA 2 cut(s) 111, 242
Hpy188III TCNNGA 2 cut(s) 57, 524
Hpy8I GTNNAC 3 cut(s) 215, 347, 519
HpyAV CCTTC 3 cut(s) 632, 811, 845
HpyCH4III ACNGT 1 cut(s) 26
HpyCH4IV ACGT 2 cut(s) 499, 747
HpyCH4V TGCA 7 cut(s) 197, 266, 326, 617, 685, 736, 841
HpyF10VI GCNNNNNNNGC 2 cut(s) 287, 623
HpyF3I CTNAG 4 cut(s) 108, 399, 707, 873
HpySE526I ACGT 2 cut(s) 499, 747
Hsp92II CATG 4 cut(s) 334, 382, 776, 802
Ksp22I TGATCA 1 cut(s) 600
Kzo9I GATC 5 cut(s) 259, 395, 410, 600, 670
LmnI GCTCC 2 cut(s) 544, 631
LpnPI CCDG 4 cut(s) 20, 267, 603, 722
LweI GCATC 3 cut(s) 184, 313, 853
MaeII ACGT 2 cut(s) 499, 747
MaeIII GTNAC 2 cut(s) 529, 748
MalI GATC 5 cut(s) 261, 397, 412, 602, 672
MboI GATC 5 cut(s) 259, 395, 410, 600, 670
MboII GAAGA 8 cut(s) 143, 305, 314, 317, 329, 452, 781, 784
MflI RGATCY 2 cut(s) 395, 670
MluCI AATT 3 cut(s) 416, 590, 758
MmeI TCCRAC 1 cut(s) 126
MnlI CCTC 6 cut(s) 248, 313, 415, 507, 702, 802
MseI TTAA 3 cut(s) 92, 648, 782
MslI CAYNNNNRTG 1 cut(s) 231
MwoI GCNNNNNNNGC 2 cut(s) 287, 623
NdeII GATC 5 cut(s) 259, 395, 410, 600, 670
NlaIII CATG 4 cut(s) 334, 382, 776, 802
NlaIV GGNNCC 1 cut(s) 627
NmuCI GTSAC 1 cut(s) 748
PfeI GAWTC 1 cut(s) 53
PflMI CCANNNNNTGG 1 cut(s) 26
PshBI ATTAAT 1 cut(s) 648
PspN4I GGNNCC 1 cut(s) 627
PsuI RGATCY 2 cut(s) 395, 670
RsaI GTAC 1 cut(s) 348
RsaNI GTAC 1 cut(s) 347
RseI CAYNNNNRTG 1 cut(s) 231
SaqAI TTAA 3 cut(s) 92, 648, 782
Sau3AI GATC 5 cut(s) 259, 395, 410, 600, 670
SfaNI GCATC 3 cut(s) 184, 313, 853
SfcI CTRYAG 1 cut(s) 851
SmiMI CAYNNNNRTG 1 cut(s) 231
SmlI CTYRAG 1 cut(s) 522
SmoI CTYRAG 1 cut(s) 522
Sse9I AATT 3 cut(s) 416, 590, 758
TaaI ACNGT 1 cut(s) 26
TaiI ACGT 2 cut(s) 502, 750
TaqI TCGA 1 cut(s) 168
TasI AATT 3 cut(s) 416, 590, 758
TfiI GAWTC 1 cut(s) 53
Tru1I TTAA 3 cut(s) 92, 648, 782
Tru9I TTAA 3 cut(s) 92, 648, 782
TscAI CASTG 1 cut(s) 610
TseFI GTSAC 1 cut(s) 748
Tsp45I GTSAC 1 cut(s) 748
TspDTI ATGAA 4 cut(s) 144, 315, 347, 389
TspRI CASTG 1 cut(s) 610
Van91I CCANNNNNTGG 1 cut(s) 26
VspI ATTAAT 1 cut(s) 648
XapI RAATTY 1 cut(s) 590
XcmI CCANNNNNNNNNTGG 1 cut(s) 619
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.