DDE superfamily endonuclease
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 358 |
| AcsI | RAATTY | 1 cut(s) | 473 |
| AfaI | GTAC | 1 cut(s) | 309 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 205 |
| AgsI | TTSAA | 3 cut(s) | 53, 185, 479 |
| AluBI | AGCT | 3 cut(s) | 11, 410, 527 |
| AluI | AGCT | 3 cut(s) | 11, 410, 527 |
| Alw26I | GTCTC | 1 cut(s) | 326 |
| AoxI | GGCC | 2 cut(s) | 323, 610 |
| ApoI | RAATTY | 1 cut(s) | 473 |
| AspS9I | GGNCC | 1 cut(s) | 323 |
| AsuHPI | GGTGA | 1 cut(s) | 436 |
| BbsI | GAAGAC | 1 cut(s) | 544 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 437, 471 |
| BclI | TGATCA | 1 cut(s) | 441 |
| BcoDI | GTCTC | 1 cut(s) | 326 |
| BfaI | CTAG | 2 cut(s) | 12, 524 |
| BfmI | CTRYAG | 1 cut(s) | 614 |
| BmgT120I | GGNCC | 1 cut(s) | 323 |
| BmiI | GGNNCC | 1 cut(s) | 468 |
| BmsI | GCATC | 2 cut(s) | 145, 274 |
| BpiI | GAAGAC | 1 cut(s) | 544 |
| BsaJI | CCNNGG | 1 cut(s) | 199 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 205 |
| Bse3DI | GCAATG | 5 cut(s) | 105, 147, 234, 453, 494 |
| BseDI | CCNNGG | 1 cut(s) | 199 |
| BseGI | GGATG | 3 cut(s) | 160, 289, 421 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 205 |
| BseMI | GCAATG | 5 cut(s) | 105, 147, 234, 453, 494 |
| BshFI | GGCC | 2 cut(s) | 325, 612 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 205 |
| BsmAI | GTCTC | 1 cut(s) | 326 |
| BsmBI | CGTCTC | 1 cut(s) | 326 |
| BsnI | GGCC | 2 cut(s) | 325, 612 |
| Bsp1407I | TGTACA | 1 cut(s) | 307 |
| Bsp143I | GATC | 2 cut(s) | 220, 441 |
| BspANI | GGCC | 2 cut(s) | 325, 612 |
| BspLI | GGNNCC | 1 cut(s) | 468 |
| BsrDI | GCAATG | 5 cut(s) | 105, 147, 234, 453, 494 |
| BsrGI | TGTACA | 1 cut(s) | 307 |
| BssECI | CCNNGG | 1 cut(s) | 199 |
| BssMI | GATC | 2 cut(s) | 220, 441 |
| BssNAI | GTATAC | 1 cut(s) | 359 |
| BssT1I | CCWWGG | 1 cut(s) | 199 |
| Bst1107I | GTATAC | 1 cut(s) | 359 |
| Bst4CI | ACNGT | 1 cut(s) | 618 |
| BstAUI | TGTACA | 1 cut(s) | 307 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 203 |
| BstF5I | GGATG | 3 cut(s) | 160, 289, 421 |
| BstKTI | GATC | 2 cut(s) | 223, 444 |
| BstMAI | GTCTC | 1 cut(s) | 326 |
| BstMBI | GATC | 2 cut(s) | 220, 441 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 464 |
| BstSFI | CTRYAG | 1 cut(s) | 614 |
| BstV2I | GAAGAC | 1 cut(s) | 544 |
| BstZ17I | GTATAC | 1 cut(s) | 359 |
| BsuRI | GGCC | 2 cut(s) | 325, 612 |
| BtsCI | GGATG | 3 cut(s) | 160, 289, 421 |
| Cfr13I | GGNCC | 1 cut(s) | 323 |
| Csp6I | GTAC | 1 cut(s) | 308 |
| CviAII | CATG | 3 cut(s) | 536, 562, 608 |
| CviJI | RGCY | 9 cut(s) | 11, 325, 410, 425, 452, 467, 527, 540, 612 |
| CviKI_1 | RGCY | 9 cut(s) | 11, 325, 410, 425, 452, 467, 527, 540, 612 |
| CviQI | GTAC | 1 cut(s) | 308 |
| DpnI | GATC | 2 cut(s) | 222, 443 |
| DpnII | GATC | 2 cut(s) | 220, 441 |
| Eco130I | CCWWGG | 1 cut(s) | 199 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 203 |
| EcoT14I | CCWWGG | 1 cut(s) | 199 |
| ErhI | CCWWGG | 1 cut(s) | 199 |
| Esp3I | CGTCTC | 1 cut(s) | 326 |
| FaeI | CATG | 3 cut(s) | 539, 565, 611 |
| FatI | CATG | 3 cut(s) | 535, 561, 607 |
| FbaI | TGATCA | 1 cut(s) | 441 |
| FblI | GTMKAC | 1 cut(s) | 358 |
| FokI | GGATG | 3 cut(s) | 167, 296, 428 |
| FspBI | CTAG | 2 cut(s) | 12, 524 |
| HaeIII | GGCC | 2 cut(s) | 325, 612 |
| Hin1II | CATG | 3 cut(s) | 539, 565, 611 |
| HinfI | GANTC | 3 cut(s) | 53, 295, 549 |
| HphI | GGTGA | 1 cut(s) | 436 |
| Hpy166II | GTNNAC | 3 cut(s) | 176, 308, 359 |
| Hpy188III | TCNNGA | 2 cut(s) | 57, 299 |
| Hpy8I | GTNNAC | 3 cut(s) | 176, 308, 359 |
| HpyCH4III | ACNGT | 1 cut(s) | 618 |
| HpyCH4V | TGCA | 4 cut(s) | 227, 287, 458, 499 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 464 |
| Hsp92II | CATG | 3 cut(s) | 539, 565, 611 |
| Ksp22I | TGATCA | 1 cut(s) | 441 |
| Kzo9I | GATC | 2 cut(s) | 220, 441 |
| LmnI | GCTCC | 2 cut(s) | 385, 472 |
| LpnPI | CCDG | 2 cut(s) | 339, 444 |
| LweI | GCATC | 2 cut(s) | 145, 274 |
| MaeI | CTAG | 2 cut(s) | 12, 524 |
| MalI | GATC | 2 cut(s) | 222, 443 |
| MboI | GATC | 2 cut(s) | 220, 441 |
| MboII | GAAGA | 7 cut(s) | 104, 275, 278, 350, 356, 491, 544 |
| MluCI | AATT | 2 cut(s) | 22, 473 |
| MlyI | GAGTC | 1 cut(s) | 558 |
| MmeI | TCCRAC | 2 cut(s) | 87, 223 |
| MnlI | CCTC | 3 cut(s) | 199, 295, 565 |
| MslI | CAYNNNNRTG | 1 cut(s) | 192 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 464 |
| NdeII | GATC | 2 cut(s) | 220, 441 |
| NlaIII | CATG | 3 cut(s) | 539, 565, 611 |
| NlaIV | GGNNCC | 1 cut(s) | 468 |
| PfeI | GAWTC | 2 cut(s) | 53, 295 |
| PleI | GAGTC | 1 cut(s) | 557 |
| PpsI | GAGTC | 1 cut(s) | 557 |
| PspN4I | GGNNCC | 1 cut(s) | 468 |
| PspPI | GGNCC | 1 cut(s) | 323 |
| RsaI | GTAC | 1 cut(s) | 309 |
| RsaNI | GTAC | 1 cut(s) | 308 |
| RseI | CAYNNNNRTG | 1 cut(s) | 192 |
| Sau3AI | GATC | 2 cut(s) | 220, 441 |
| Sau96I | GGNCC | 1 cut(s) | 323 |
| SchI | GAGTC | 1 cut(s) | 558 |
| SetI | ASST | 6 cut(s) | 13, 166, 210, 412, 529, 600 |
| SfaNI | GCATC | 2 cut(s) | 145, 274 |
| SfcI | CTRYAG | 1 cut(s) | 614 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 192 |
| Sse9I | AATT | 2 cut(s) | 22, 473 |
| SspMI | CTAG | 2 cut(s) | 12, 524 |
| StyI | CCWWGG | 1 cut(s) | 199 |
| TaaI | ACNGT | 1 cut(s) | 618 |
| TasI | AATT | 2 cut(s) | 22, 473 |
| TatI | WGTACW | 1 cut(s) | 307 |
| TfiI | GAWTC | 2 cut(s) | 53, 295 |
| TspDTI | ATGAA | 5 cut(s) | 105, 158, 276, 308, 357 |
| TspGWI | ACGGA | 1 cut(s) | 350 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 203 |
| XapI | RAATTY | 1 cut(s) | 473 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 460 |
| XmiI | GTMKAC | 1 cut(s) | 358 |
| XspI | CTAG | 2 cut(s) | 12, 524 |