MD06G1073100.v1.1
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0000883
Physical Location & Seq
Forward (+)
18186971 .. 18190835
3865 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1073100.v1.1.491

Sequence Viewer

Length: 987 bp
ATGTATATCTGTGCAATGATGAATTCTGATTCAGCTATAAGAAAACGAGGAAGGGGTCAAAACAAACGTTTCTGGACAACCAAAGAAGATTCTGCATTAGTTGAATCATTGCAAGAATTATATCGCAACACCAAGTGGCGAGCTGATAATGGTTTCAAAAATGGATACTTAACCCATATAGAGGCAATACTGGAAGCCAAACTGCCGGGTTGTGGAATACAAGCGTCTCCTCACATTGAATCACGAGTTAAGACATTGAAGAAAAAGTATTGTGCCTTAACTGAGATGTTATCTCAAGGAGGATTTAGTTGGGATGATAAACAAATGATGTTGGTTTGCAATAGAAGTCTATATGATGAATGGGTGAAGAAAAGAAGGGATGCAAGTGGATTGTATGGCAAGCCATTTCCATTCTACCATGTCTTGCGGGAGATATATGAAAAAGGTCGTCATACTGGTGCAAATGTTGGCAATGATGATGATGATGAAGAGGACATTAGGCAAGAGGATGCAAACATTGATCAAACTCATGGCGGGGACGATGATTTGGGTGAAAATGTGATTCTGAATGTGGATACGAATATAGAATCAGAGTCTGAAGGGATGGAACAGTTTGATGTATCATTTAGTACCCAACAACGAAGGCCTGCACAAAGTACCCCAAGTGTTTCAGATCCCGGTCGCAGGGTGAAAGCAAAGGTAATGGAGGAGATGACAAAGAATTTTGGGAGTATGGCAGCTTCGGTACAAGCGATGACATCTAAGATTGATGCTCTGATTAAAGTTCTTTCAACTGATAAACAAGTGGCTGAATTGCAAGCTAAACTTGACGGTGAGTTGAGCAAAATTGAAGGCCTTACCGGATTGCAAGTCTTTAGAGCGATAAATATACTGGCCACCAATCATGACCTGCTGAGAGTGTTCTTTACCATGTCCGAGGAAAGGAAAAAGGTATACATTACGCATCTGTTAGAGTATGGCTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

329

Amino Acids

37.22

Weight (kDa)

5.9

Isoelectric Point (pI)

53.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 25 - 118 1.6e-09 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 918
AccI GTMKAC 1 cut(s) 954
AciI CCGC 2 cut(s) 427, 534
AclI AACGTT 1 cut(s) 67
AclWI GGATC 1 cut(s) 668
AcoI YGGCCR 1 cut(s) 894
AcsI RAATTY 2 cut(s) 22, 721
AcuI CTGAAG 1 cut(s) 618
AdeI CACNNNGTG 1 cut(s) 135
AfaI GTAC 3 cut(s) 631, 658, 747
AfiI CCNNNNNNNGG 4 cut(s) 181, 212, 684, 942
AgsI TTSAA 6 cut(s) 104, 157, 239, 259, 792, 851
AluBI AGCT 4 cut(s) 35, 143, 740, 821
AluI AGCT 4 cut(s) 35, 143, 740, 821
Alw26I GTCTC 1 cut(s) 231
AlwI GGATC 1 cut(s) 668
AlwNI CAGNNNCTG 1 cut(s) 596
AoxI GGCC 3 cut(s) 644, 853, 894
ApeKI GCWGC 1 cut(s) 737
ApoI RAATTY 2 cut(s) 22, 721
AsuC2I CCSGG 2 cut(s) 207, 678
AsuHPI GGTGA 4 cut(s) 376, 563, 700, 845
BalI TGGCCA 1 cut(s) 896
BarI GAAGNNNNNNTAC 2 cut(s) 724, 756
BauI CACGAG 1 cut(s) 243
BbvI GCAGC 1 cut(s) 749
BccI CCATC 1 cut(s) 598
BciVI GTATCC 2 cut(s) 158, 568
BclI TGATCA 1 cut(s) 520
BcnI CCSGG 2 cut(s) 207, 678
BcoDI GTCTC 1 cut(s) 231
BfuAI ACCTGC 1 cut(s) 918
BfuI GTATCC 2 cut(s) 158, 568
BisI GCNGC 1 cut(s) 738
BlsI GCNGC 1 cut(s) 739
Bme1390I CCNGG 2 cut(s) 207, 678
BmrFI CCNGG 2 cut(s) 207, 678
BmsI GCATC 4 cut(s) 370, 499, 760, 973
BpuEI CTTGAG 1 cut(s) 279
BpuMI CCSGG 2 cut(s) 207, 678
BsaJI CCNNGG 1 cut(s) 936
BsaWI WCCGGW 1 cut(s) 860
Bsc4I CCNNNNNNNGG 4 cut(s) 181, 212, 684, 942
Bse1I ACTGG 3 cut(s) 195, 460, 897
Bse3DI GCAATG 3 cut(s) 21, 107, 478
BseDI CCNNGG 1 cut(s) 936
BseGI GGATG 4 cut(s) 319, 385, 514, 609
BseLI CCNNNNNNNGG 4 cut(s) 181, 212, 684, 942
BseMI GCAATG 3 cut(s) 21, 107, 478
BseMII CTCAG 2 cut(s) 273, 905
BseNI ACTGG 3 cut(s) 195, 460, 897
BseRI GAGGAG 2 cut(s) 219, 722
BseXI GCAGC 1 cut(s) 749
BsgI GTGCAG 1 cut(s) 633
Bsh1285I CGRYCG 1 cut(s) 682
BshFI GGCC 3 cut(s) 646, 855, 896
BsiEI CGRYCG 1 cut(s) 682
BsiSI CCGG 3 cut(s) 206, 678, 861
BslFI GGGAC 1 cut(s) 551
BslI CCNNNNNNNGG 4 cut(s) 181, 212, 684, 942
BsmAI GTCTC 1 cut(s) 231
BsmBI CGTCTC 1 cut(s) 231
BsmFI GGGAC 1 cut(s) 551
BsnI GGCC 3 cut(s) 646, 855, 896
Bsp143I GATC 2 cut(s) 520, 673
BspACI CCGC 2 cut(s) 427, 534
BspANI GGCC 3 cut(s) 646, 855, 896
BspCNI CTCAG 2 cut(s) 274, 906
BspHI TCATGA 1 cut(s) 904
BspMI ACCTGC 1 cut(s) 918
BspPI GGATC 1 cut(s) 668
BsrDI GCAATG 3 cut(s) 21, 107, 478
BsrI ACTGG 3 cut(s) 195, 460, 897
BssECI CCNNGG 1 cut(s) 936
BssMI GATC 2 cut(s) 520, 673
BssNAI GTATAC 1 cut(s) 955
BssSI CACGAG 1 cut(s) 243
Bst1107I GTATAC 1 cut(s) 955
Bst2BI CACGAG 1 cut(s) 243
Bst4CI ACNGT 2 cut(s) 612, 833
Bst6I CTCTTC 1 cut(s) 483
BstC8I GCNNGC 4 cut(s) 141, 401, 648, 819
BstDEI CTNAG 3 cut(s) 282, 762, 914
BstF5I GGATG 4 cut(s) 319, 385, 514, 609
BstKTI GATC 2 cut(s) 523, 676
BstMAI GTCTC 1 cut(s) 231
BstMBI GATC 2 cut(s) 520, 673
BstMCI CGRYCG 1 cut(s) 682
BstSCI CCNGG 2 cut(s) 205, 676
BstV1I GCAGC 1 cut(s) 749
BstX2I RGATCY 1 cut(s) 673
BstYI RGATCY 1 cut(s) 673
BstZ17I GTATAC 1 cut(s) 955
BsuI GTATCC 2 cut(s) 158, 568
BsuRI GGCC 3 cut(s) 646, 855, 896
BtgZI GCGATG 1 cut(s) 767
BtsCI GGATG 4 cut(s) 319, 385, 514, 609
BveI ACCTGC 1 cut(s) 918
Cac8I GCNNGC 4 cut(s) 141, 401, 648, 819
CaiI CAGNNNCTG 1 cut(s) 596
CciI TCATGA 1 cut(s) 904
CseI GACGC 1 cut(s) 213
Csp6I GTAC 3 cut(s) 630, 657, 746
CviAII CATG 4 cut(s) 419, 530, 905, 931
CviQI GTAC 3 cut(s) 630, 657, 746
DdeI CTNAG 3 cut(s) 282, 762, 914
DpnI GATC 2 cut(s) 522, 675
DpnII GATC 2 cut(s) 520, 673
DraIII CACNNNGTG 1 cut(s) 135
EaeI YGGCCR 1 cut(s) 894
Eam1104I CTCTTC 1 cut(s) 483
EarI CTCTTC 1 cut(s) 483
Eco147I AGGCCT 2 cut(s) 646, 855
Eco57I CTGAAG 1 cut(s) 618
EcoRI GAATTC 1 cut(s) 22
Esp3I CGTCTC 1 cut(s) 231
FaeI CATG 4 cut(s) 422, 533, 908, 934
FalI AAGNNNNNCTT 2 cut(s) 810, 842
FaqI GGGAC 1 cut(s) 551
FatI CATG 4 cut(s) 418, 529, 904, 930
FauI CCCGC 2 cut(s) 420, 527
FbaI TGATCA 1 cut(s) 520
FblI GTMKAC 1 cut(s) 954
Fnu4HI GCNGC 1 cut(s) 738
FokI GGATG 4 cut(s) 326, 392, 521, 616
Fsp4HI GCNGC 1 cut(s) 738
GluI GCNGC 1 cut(s) 738
HaeIII GGCC 3 cut(s) 646, 855, 896
HapII CCGG 3 cut(s) 206, 678, 861
HgaI GACGC 1 cut(s) 213
Hin1II CATG 4 cut(s) 422, 533, 908, 934
HinfI GANTC 7 cut(s) 29, 89, 104, 239, 562, 587, 593
HpaII CCGG 3 cut(s) 206, 678, 861
HphI GGTGA 4 cut(s) 376, 563, 700, 845
Hpy166II GTNNAC 1 cut(s) 955
Hpy188I TCNGA 7 cut(s) 28, 567, 592, 598, 673, 777, 937
Hpy188III TCNNGA 3 cut(s) 73, 243, 905
Hpy8I GTNNAC 1 cut(s) 955
HpyAV CCTTC 5 cut(s) 45, 369, 593, 636, 845
HpyCH4III ACNGT 2 cut(s) 612, 833
HpyCH4IV ACGT 1 cut(s) 67
HpyF3I CTNAG 3 cut(s) 282, 762, 914
HpySE526I ACGT 1 cut(s) 67
Hsp92II CATG 4 cut(s) 422, 533, 908, 934
Ksp22I TGATCA 1 cut(s) 520
Kzo9I GATC 2 cut(s) 520, 673
Lsp1109I GCAGC 1 cut(s) 749
LweI GCATC 4 cut(s) 370, 499, 760, 973
MaeII ACGT 1 cut(s) 67
MalI GATC 2 cut(s) 522, 675
MboI GATC 2 cut(s) 520, 673
MboII GAAGA 4 cut(s) 98, 271, 379, 500
MflI RGATCY 1 cut(s) 673
MlsI TGGCCA 1 cut(s) 896
MluCI AATT 5 cut(s) 22, 116, 721, 812, 846
MluNI TGGCCA 1 cut(s) 896
MlyI GAGTC 1 cut(s) 602
MnlI CCTC 8 cut(s) 41, 175, 240, 293, 484, 499, 700, 931
Mox20I TGGCCA 1 cut(s) 896
MscI TGGCCA 1 cut(s) 896
MseI TTAA 4 cut(s) 170, 249, 278, 780
MslI CAYNNNNRTG 1 cut(s) 456
Msp20I TGGCCA 1 cut(s) 896
MspI CCGG 3 cut(s) 206, 678, 861
MspR9I CCNGG 2 cut(s) 207, 678
NciI CCSGG 2 cut(s) 207, 678
NdeII GATC 2 cut(s) 520, 673
NlaIII CATG 4 cut(s) 422, 533, 908, 934
PagI TCATGA 1 cut(s) 904
PceI AGGCCT 2 cut(s) 646, 855
PcsI WCGNNNNNNNCGW 1 cut(s) 749
PfeI GAWTC 6 cut(s) 29, 89, 104, 239, 562, 587
PkrI GCNGC 1 cut(s) 739
PleI GAGTC 1 cut(s) 601
PpsI GAGTC 1 cut(s) 601
Psp1406I AACGTT 1 cut(s) 67
PstNI CAGNNNCTG 1 cut(s) 596
PsuI RGATCY 1 cut(s) 673
RsaI GTAC 3 cut(s) 631, 658, 747
RsaNI GTAC 3 cut(s) 630, 657, 746
RseI CAYNNNNRTG 1 cut(s) 456
SaqAI TTAA 4 cut(s) 170, 249, 278, 780
SatI GCNGC 1 cut(s) 738
Sau3AI GATC 2 cut(s) 520, 673
SchI GAGTC 1 cut(s) 602
ScrFI CCNGG 2 cut(s) 207, 678
SetI ASST 9 cut(s) 37, 70, 145, 448, 702, 742, 823, 912, 954
SfaNI GCATC 4 cut(s) 370, 499, 760, 973
SmiMI CAYNNNNRTG 1 cut(s) 456
SmlI CTYRAG 1 cut(s) 294
SmoI CTYRAG 1 cut(s) 294
Sse9I AATT 5 cut(s) 22, 116, 721, 812, 846
SseBI AGGCCT 2 cut(s) 646, 855
SsiI CCGC 2 cut(s) 427, 534
StuI AGGCCT 2 cut(s) 646, 855
StyD4I CCNGG 2 cut(s) 205, 676
TaaI ACNGT 2 cut(s) 612, 833
TaiI ACGT 1 cut(s) 70
TasI AATT 5 cut(s) 22, 116, 721, 812, 846
TfiI GAWTC 6 cut(s) 29, 89, 104, 239, 562, 587
Tru1I TTAA 4 cut(s) 170, 249, 278, 780
Tru9I TTAA 4 cut(s) 170, 249, 278, 780
TseI GCWGC 1 cut(s) 737
TspDTI ATGAA 4 cut(s) 35, 372, 453, 501
XapI RAATTY 2 cut(s) 22, 721
XmiI GTMKAC 1 cut(s) 954
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.