FvH4_6g28113
MYB Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000883
Physical Location & Seq
Reverse (-)
21656942 .. 21659479
2538 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g28113.t1

Sequence Viewer

Length: 1113 bp
ATGATCCGATGCCAAAAGGACTTCTGGAAAACACTTGAACCTGTACCCGAGAACTCCACAGATAATAGGTGGAAGTGGTTTAAGCCGGCAGCAGTTGAGAACTTGGAAGATGATGACTATATTGATACAGTTGAGACCTCAAATGAGTGGACAATGTGGAGGCAAAACCTTGCAAATGAAATTAGGCTGAATATGAGTTCGCCAACTACTTCAAGCCAACCGAAAAAAGGAGGAAGGGGTAAAAACAAGCGTTTTTGGACATCTAAGGAAGATGATGTGCTGGTAGATTCTTTATTGGAACTCTACCGTGATCCGAAGTGGCGTGTGGATACCGGCTTTAGAAATAATGATGCAATATCTCAAAGTGGTTTTGGATGGAATGAACAAACAAAGACATTGGTTTGTGAAAGAACGGTATTTGATGAGTGGGCAAAGAACAAAAAGGAGGCAAAAGGTTTGTATGGCAAACCGTTTGAACATTATTACGCACTTGGAGAGATATATGGAAAAGATGGTGCACTAGGAACAAATGCTGGAAATGCTGAAGATGATGAAGAAGAAGTTAGAGAAGAGGATGCAAGTATAAATCAAGCTGGTGTACGAGTTGATGATTTTTTCGAGCAAATGGAGGATATGACAACTGATGGTGGATCTCAATATGTGGGATCAGAATATCAAGGACTTGATGAAGTGGAAAATGAATATGTGCCTTTTACACAACCAAGTCCTCCCCAACCACCAAATACCAACCAACGTGCTAAACAACCGAGGTCAGCCCAAGATGTAGCAAATGCTCCAAATAAAACCCATCGAAAGGCAAGAGCTTTAAATGATATGGCAAACAAGTTTGGAGTCATCGCTGAAGCCATTTCTGGAATGGCTCCAAAGTTTGAAGGCTTGATTAACGTTCTCTCAACAGAAAAGGATCTTGCTGATATGCAAGGGAAACTTTGTGGTGAGCTTCGGAAGATGGAATTCCTAACTCCAGTGCAGGTATTTCACATTACTAACAAACTATCTAAAGAGCATGACTGGTTGAGGGTCTTTTTTACCATGACTGATGAAGAAAAGAGAGACTACATAATCACTTTTCTGCAATGTGGCTTAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

371

Amino Acids

42.45

Weight (kDa)

4.86

Isoelectric Point (pI)

41.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 982
AclI AACGTT 1 cut(s) 906
AclWI GGATC 4 cut(s) 305, 658, 673, 933
AcsI RAATTY 1 cut(s) 974
AcuI CTGAAG 2 cut(s) 564, 882
AfaI GTAC 2 cut(s) 45, 600
AfiI CCNNNNNNNGG 2 cut(s) 227, 814
AgsI TTSAA 4 cut(s) 38, 213, 476, 893
AluBI AGCT 3 cut(s) 593, 824, 961
AluI AGCT 3 cut(s) 593, 824, 961
Alw21I GWGCWC 1 cut(s) 520
Alw26I GTCTC 2 cut(s) 128, 1068
Alw44I GTGCAC 1 cut(s) 516
AlwI GGATC 4 cut(s) 305, 658, 673, 933
Ama87I CYCGRG 1 cut(s) 47
ApaLI GTGCAC 1 cut(s) 516
ApeKI GCWGC 1 cut(s) 89
ApoI RAATTY 1 cut(s) 974
AsuHPI GGTGA 1 cut(s) 968
AvaI CYCGRG 1 cut(s) 47
BaeGI GKGCMC 1 cut(s) 520
Bbv12I GWGCWC 1 cut(s) 520
BbvI GCAGC 1 cut(s) 101
BccI CCATC 5 cut(s) 369, 506, 638, 816, 964
BciVI GTATCC 1 cut(s) 322
BcoDI GTCTC 2 cut(s) 128, 1068
BfaI CTAG 1 cut(s) 521
BfuAI ACCTGC 1 cut(s) 982
BfuI GTATCC 1 cut(s) 322
BisI GCNGC 1 cut(s) 90
BlsI GCNGC 1 cut(s) 91
BmeT110I CYCGRG 1 cut(s) 47
BmiI GGNNCC 1 cut(s) 882
BmsI GCATC 2 cut(s) 340, 565
BpmI CTGGAG 1 cut(s) 969
BsaI GGTCTC 1 cut(s) 128
BsaJI CCNNGG 1 cut(s) 767
Bsc4I CCNNNNNNNGG 2 cut(s) 227, 814
Bse118I RCCGGY 2 cut(s) 85, 332
Bse1I ACTGG 2 cut(s) 986, 1037
Bse3DI GCAATG 1 cut(s) 1103
BseDI CCNNGG 1 cut(s) 767
BseGI GGATG 2 cut(s) 380, 580
BseLI CCNNNNNNNGG 2 cut(s) 227, 814
BseMI GCAATG 1 cut(s) 1103
BseNI ACTGG 2 cut(s) 986, 1037
BseSI GKGCMC 1 cut(s) 520
BseXI GCAGC 1 cut(s) 101
BsgI GTGCAG 1 cut(s) 1010
BsiHKAI GWGCWC 1 cut(s) 520
BsiHKCI CYCGRG 1 cut(s) 47
BsiSI CCGG 2 cut(s) 86, 333
BslI CCNNNNNNNGG 2 cut(s) 227, 814
BsmAI GTCTC 2 cut(s) 128, 1068
Bso31I GGTCTC 1 cut(s) 128
BsoBI CYCGRG 1 cut(s) 47
Bsp1286I GDGCHC 1 cut(s) 520
Bsp143I GATC 5 cut(s) 3, 310, 650, 665, 925
BspLI GGNNCC 1 cut(s) 882
BspMI ACCTGC 1 cut(s) 982
BspPI GGATC 4 cut(s) 305, 658, 673, 933
BspTNI GGTCTC 1 cut(s) 128
BsrDI GCAATG 1 cut(s) 1103
BsrFI RCCGGY 2 cut(s) 85, 332
BsrI ACTGG 2 cut(s) 986, 1037
BssAI RCCGGY 2 cut(s) 85, 332
BssECI CCNNGG 1 cut(s) 767
BssMI GATC 5 cut(s) 3, 310, 650, 665, 925
Bst4CI ACNGT 4 cut(s) 130, 308, 415, 471
Bst6I CTCTTC 1 cut(s) 564
BstC8I GCNNGC 1 cut(s) 87
BstDEI CTNAG 2 cut(s) 264, 1105
BstF5I GGATG 2 cut(s) 380, 580
BstKTI GATC 5 cut(s) 6, 313, 653, 668, 928
BstMAI GTCTC 2 cut(s) 128, 1068
BstMBI GATC 5 cut(s) 3, 310, 650, 665, 925
BstMWI GCNNNNNNNGC 1 cut(s) 539
BstSLI GKGCMC 1 cut(s) 520
BstV1I GCAGC 1 cut(s) 101
BstX2I RGATCY 2 cut(s) 650, 925
BstYI RGATCY 2 cut(s) 650, 925
BsuI GTATCC 1 cut(s) 322
BtgZI GCGATG 1 cut(s) 841
BtsCI GGATG 2 cut(s) 380, 580
BtsIMutI CAGTG 1 cut(s) 993
BveI ACCTGC 1 cut(s) 982
Cac8I GCNNGC 1 cut(s) 87
Cfr10I RCCGGY 2 cut(s) 85, 332
Csp6I GTAC 2 cut(s) 44, 599
CviAII CATG 2 cut(s) 1028, 1054
CviQI GTAC 2 cut(s) 44, 599
DdeI CTNAG 2 cut(s) 264, 1105
DpnI GATC 5 cut(s) 5, 312, 652, 667, 927
DpnII GATC 5 cut(s) 3, 310, 650, 665, 925
DraI TTTAAA 1 cut(s) 828
Eam1104I CTCTTC 1 cut(s) 564
EarI CTCTTC 1 cut(s) 564
Eco31I GGTCTC 1 cut(s) 128
Eco57I CTGAAG 2 cut(s) 564, 882
Eco88I CYCGRG 1 cut(s) 47
EcoRI GAATTC 1 cut(s) 974
FaeI CATG 2 cut(s) 1031, 1057
FalI AAGNNNNNCTT 2 cut(s) 933, 965
FatI CATG 2 cut(s) 1027, 1053
Fnu4HI GCNGC 1 cut(s) 90
FokI GGATG 2 cut(s) 387, 587
Fsp4HI GCNGC 1 cut(s) 90
FspBI CTAG 1 cut(s) 521
GluI GCNGC 1 cut(s) 90
GsuI CTGGAG 1 cut(s) 969
HapII CCGG 2 cut(s) 86, 333
Hin1II CATG 2 cut(s) 1031, 1057
HinfI GANTC 2 cut(s) 287, 852
HpaII CCGG 2 cut(s) 86, 333
HphI GGTGA 1 cut(s) 968
Hpy166II GTNNAC 3 cut(s) 150, 518, 599
Hpy188I TCNGA 4 cut(s) 8, 315, 670, 966
Hpy188III TCNNGA 2 cut(s) 25, 873
Hpy8I GTNNAC 3 cut(s) 150, 518, 599
HpyAV CCTTC 2 cut(s) 228, 887
HpyCH4III ACNGT 4 cut(s) 130, 308, 415, 471
HpyCH4IV ACGT 2 cut(s) 754, 906
HpyCH4V TGCA 7 cut(s) 173, 353, 518, 578, 940, 991, 1096
HpyF10VI GCNNNNNNNGC 1 cut(s) 539
HpyF3I CTNAG 2 cut(s) 264, 1105
HpySE526I ACGT 2 cut(s) 754, 906
Hsp92II CATG 2 cut(s) 1031, 1057
KroI GCCGGC 1 cut(s) 85
KroNI GCCGGC 1 cut(s) 87
Kzo9I GATC 5 cut(s) 3, 310, 650, 665, 925
LmnI GCTCC 2 cut(s) 799, 886
Lsp1109I GCAGC 1 cut(s) 101
LweI GCATC 2 cut(s) 340, 565
MaeI CTAG 1 cut(s) 521
MaeII ACGT 2 cut(s) 754, 906
MalI GATC 5 cut(s) 5, 312, 652, 667, 927
MboI GATC 5 cut(s) 3, 310, 650, 665, 925
MboII GAAGA 8 cut(s) 119, 281, 557, 566, 569, 581, 979, 1076
MflI RGATCY 2 cut(s) 650, 925
MhlI GDGCHC 1 cut(s) 520
MluCI AATT 2 cut(s) 180, 974
MlyI GAGTC 1 cut(s) 861
MnlI CCTC 9 cut(s) 148, 153, 224, 439, 565, 622, 738, 762, 1032
MroNI GCCGGC 1 cut(s) 85
MseI TTAA 3 cut(s) 81, 827, 903
MspI CCGG 2 cut(s) 86, 333
MwoI GCNNNNNNNGC 1 cut(s) 539
NaeI GCCGGC 1 cut(s) 87
NdeII GATC 5 cut(s) 3, 310, 650, 665, 925
NgoMIV GCCGGC 1 cut(s) 85
NlaIII CATG 2 cut(s) 1031, 1057
NlaIV GGNNCC 1 cut(s) 882
PdiI GCCGGC 1 cut(s) 87
PfeI GAWTC 1 cut(s) 287
PkrI GCNGC 1 cut(s) 91
PleI GAGTC 1 cut(s) 860
PpsI GAGTC 1 cut(s) 860
Psp1406I AACGTT 1 cut(s) 906
PspN4I GGNNCC 1 cut(s) 882
PsuI RGATCY 2 cut(s) 650, 925
RsaI GTAC 2 cut(s) 45, 600
RsaNI GTAC 2 cut(s) 44, 599
SaqAI TTAA 3 cut(s) 81, 827, 903
SatI GCNGC 1 cut(s) 90
Sau3AI GATC 5 cut(s) 3, 310, 650, 665, 925
SchI GAGTC 1 cut(s) 861
SduI GDGCHC 1 cut(s) 520
SfaNI GCATC 2 cut(s) 340, 565
Sse9I AATT 2 cut(s) 180, 974
SspMI CTAG 1 cut(s) 521
TaaI ACNGT 4 cut(s) 130, 308, 415, 471
TaiI ACGT 2 cut(s) 757, 909
TaqI TCGA 2 cut(s) 618, 811
TasI AATT 2 cut(s) 180, 974
TfiI GAWTC 1 cut(s) 287
Tru1I TTAA 3 cut(s) 81, 827, 903
Tru9I TTAA 3 cut(s) 81, 827, 903
TscAI CASTG 1 cut(s) 993
TseI GCWGC 1 cut(s) 89
TspDTI ATGAA 6 cut(s) 192, 396, 567, 702, 714, 1077
TspRI CASTG 1 cut(s) 993
VneI GTGCAC 1 cut(s) 516
XapI RAATTY 1 cut(s) 974
XcmI CCANNNNNNNNNTGG 1 cut(s) 874
XspI CTAG 1 cut(s) 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.