Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000883

Physical Location & Seq

Genomic Coordinates Forward (+)

26930657 .. 26932274

Gene Structure 1618 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0273000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGATTTTAAGAATATGTTCTAATATATATGTGCAGATTTTTATTCCCATCCTAGATAAAATTGGAAAAGTGAACCACTGGTTCCTGATGGTAGTGAAAATAAGAAGCAAGGAGGTTGAGATATGGGATAGTTTACCTGGTCGCACATGCAAAAAAACACGAGAGAATCTAGTTTATCATTTGCTGAATACACTGGATATGATATTTGATAATGAGATTATGATTCATTTCGATGAAGGATGCACATTCTCTTCATTTAAAATTTGTCATCCTGATTGTGTTCCAATACAACAAAATGGATTCGACTGTGGCATTTATATGCTAAAATTCATGGAGGATTATGAGAATGCATCCAAAGCAGGGGACAAGTATCATTCTGTGAATGAGCGTCTGCGCATAGCTCTCTCCTTGTTGAAGCATCCGGACAACCAAGCACGCAAAAATATTGCTGAAGCTAGACAAAGGTCACTACAAAAAGTTCTATGCAAGAAACGTGGACCACAGACGATGAAGACAAATGAGGACAGAGTAGCACATAGCGACACCGATGAAGGTATAGAGCATATTGCAGGAGATATGTTTGTAAGTATTCCGAAAGGAGATGCCATTTTCATGAAGTGGGTACTACACCTTTTCGATGACAAATATTGCTTGATGATACTAAAGAACTGCTATGAGGCCTTGCCAGACCATGGGAAAATGATGGTAGTAAATTTGGTTATACCAGAAGCCCCTGAAACTAGTCTTTCTGCTAAAAGCTTGTTTCAGTTTGATATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

259

Amino Acids

29.98

Weight (kDa)

6.79

Isoelectric Point (pI)

34.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C48	PF02902	13 - 113	1.8e-15	Ulp1 protease family, C-terminal catalytic domain
Methyltransf_2	PF00891	179 - 253	5.5e-21	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000883)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08720 FvH4_3g22621 FvH4_4g11702 FvH4_5g01520 FvH4_5g01520 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g36380 FvH4_6g01730 FvH4_6g09170 FvH4_6g20010 FvH4_6g28113
malus_domestica	MD06G1073100.v1.1
prunus_persica	Prupe.2G067700_v2.0.a1 Prupe.5G091500_v2.0.a1 Prupe.5G091500_v2.0.a1 Prupe.5G091500_v2.0.a1 Prupe.7G013000_v2.0.a1
pyrus_communis	pycom01g10330 pycom06g07250
rosa_chinensis	RchiOBHm_Chr7g0199161 RchiOBHm_Chr7g0199171
rosa_laevigata	RLG00000003809 RLG00000014802
rosa_multiflora	Rmu_sc0004791.1_g000001 Rmu_sc0006115.1_g000003 Rmu_sc0037059.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015450 Rroxscaffold_1G00015460 Rroxscaffold_3G00256990 Rroxscaffold_3G00257000 Rroxscaffold_4G00326050 Rroxscaffold_7G00182010
rosa_rugosa	Rorug03G0005500 Rorug03G0273000 Rorug05G0372800 Rorug05G0372900 Rorug07G0053100
rosa_samantha	Rh1BG202800 Rh1DG102500 Rh3AG101900 Rh3AG320900 Rh3CG107700 Rh3DG355100 Rh7AG176700 Rh7AG176800 Rh7AG365300 Rh7BG180300 Rh7CG185900 Rh7CG186000 Rh7CG384200 Rh7DG179700 Rh7DG179800
rosa_wichuraiana	Rw1G014270 Rw3G028010 Rw7G015540 Rw7G015550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	395
AccB7I	CCANNNNNTGG	1 cut(s)	692
AccIII	TCCGGA	1 cut(s)	421
AcsI	RAATTY	3 cut(s)	261, 326, 712
AcuI	CTGAAG	1 cut(s)	471
AfaI	GTAC	1 cut(s)	624
AfiI	CCNNNNNNNGG	2 cut(s)	360, 692
AgsI	TTSAA	1 cut(s)	415
AhlI	ACTAGT	1 cut(s)	740
AjnI	CCWGG	1 cut(s)	136
AluBI	AGCT	3 cut(s)	401, 455, 759
AluI	AGCT	3 cut(s)	401, 455, 759
Aor13HI	TCCGGA	1 cut(s)	421
AoxI	GGCC	1 cut(s)	678
ApoI	RAATTY	3 cut(s)	261, 326, 712
Asp700I	GAANNNNTTC	1 cut(s)	16
AspLEI	GCGC	1 cut(s)	396
AspS9I	GGNCC	1 cut(s)	497
AvaII	GGWCC	1 cut(s)	497
BauI	CACGAG	1 cut(s)	159
BbsI	GAAGAC	1 cut(s)	518
BccI	CCATC	3 cut(s)	56, 82, 697
BciT130I	CCWGG	1 cut(s)	138
BcuI	ACTAGT	1 cut(s)	740
BfaI	CTAG	4 cut(s)	53, 170, 456, 741
Bme1390I	CCNGG	1 cut(s)	138
Bme18I	GGWCC	1 cut(s)	497
BmgT120I	GGNCC	1 cut(s)	497
BmiI	GGNNCC	1 cut(s)	83
BmrFI	CCNGG	1 cut(s)	138
BmsI	GCATC	4 cut(s)	230, 359, 427, 592
BoxI	GACNNNNGTC	1 cut(s)	463
BpiI	GAAGAC	1 cut(s)	518
BsaJI	CCNNGG	1 cut(s)	691
BsaWI	WCCGGW	1 cut(s)	421
Bsc4I	CCNNNNNNNGG	2 cut(s)	360, 692
Bse1I	ACTGG	2 cut(s)	83, 198
BseAI	TCCGGA	1 cut(s)	421
BseBI	CCWGG	1 cut(s)	138
BseDI	CCNNGG	1 cut(s)	691
BseGI	GGATG	5 cut(s)	48, 245, 268, 350, 418
BseLI	CCNNNNNNNGG	2 cut(s)	360, 692
BseNI	ACTGG	2 cut(s)	83, 198
BsgI	GTGCAG	1 cut(s)	53
BshFI	GGCC	1 cut(s)	680
BsiSI	CCGG	1 cut(s)	422
BslFI	GGGAC	1 cut(s)	377
BslI	CCNNNNNNNGG	2 cut(s)	360, 692
BsmFI	GGGAC	1 cut(s)	377
BsmI	GAATGC	1 cut(s)	352
BsnI	GGCC	1 cut(s)	680
Bsp13I	TCCGGA	1 cut(s)	421
Bsp19I	CCATGG	1 cut(s)	691
BspANI	GGCC	1 cut(s)	680
BspEI	TCCGGA	1 cut(s)	421
BspHI	TCATGA	1 cut(s)	612
BspLI	GGNNCC	1 cut(s)	83
BsrI	ACTGG	2 cut(s)	83, 198
BssECI	CCNNGG	1 cut(s)	691
BssSI	CACGAG	1 cut(s)	159
BssT1I	CCWWGG	1 cut(s)	691
Bst2BI	CACGAG	1 cut(s)	159
Bst2UI	CCWGG	1 cut(s)	138
Bst4CI	ACNGT	1 cut(s)	308
Bst6I	CTCTTC	1 cut(s)	256
BstC8I	GCNNGC	1 cut(s)	436
BstDSI	CCRYGG	1 cut(s)	691
BstF5I	GGATG	5 cut(s)	48, 245, 268, 350, 418
BstHHI	GCGC	1 cut(s)	396
BstMWI	GCNNNNNNNGC	1 cut(s)	356
BstNI	CCWGG	1 cut(s)	138
BstNSI	RCATGY	1 cut(s)	150
BstPAI	GACNNNNGTC	1 cut(s)	463
BstSCI	CCNGG	1 cut(s)	136
BstV2I	GAAGAC	1 cut(s)	518
BsuRI	GGCC	1 cut(s)	680
BtgI	CCRYGG	1 cut(s)	691
BtsCI	GGATG	5 cut(s)	48, 245, 268, 350, 418
BtsIMutI	CAGTG	2 cut(s)	76, 191
Cac8I	GCNNGC	1 cut(s)	436
CciI	TCATGA	1 cut(s)	612
CfoI	GCGC	1 cut(s)	396
Cfr13I	GGNCC	1 cut(s)	497
CseI	GACGC	1 cut(s)	377
CsiI	ACCWGGT	1 cut(s)	136
Csp6I	GTAC	1 cut(s)	623
CspCI	CAANNNNNGTGG	2 cut(s)	475, 510
CviAII	CATG	4 cut(s)	147, 331, 613, 692
CviJI	RGCY	5 cut(s)	401, 455, 680, 731, 759
CviKI_1	RGCY	5 cut(s)	401, 455, 680, 731, 759
CviQI	GTAC	1 cut(s)	623
DraI	TTTAAA	1 cut(s)	259
Eam1104I	CTCTTC	1 cut(s)	256
EarI	CTCTTC	1 cut(s)	256
Eco130I	CCWWGG	1 cut(s)	691
Eco147I	AGGCCT	1 cut(s)	680
Eco47I	GGWCC	1 cut(s)	497
Eco57I	CTGAAG	1 cut(s)	471
EcoRII	CCWGG	1 cut(s)	136
EcoT14I	CCWWGG	1 cut(s)	691
EcoT22I	ATGCAT	1 cut(s)	352
ErhI	CCWWGG	1 cut(s)	691
FaeI	CATG	4 cut(s)	150, 334, 616, 695
FaqI	GGGAC	1 cut(s)	377
FatI	CATG	4 cut(s)	146, 330, 612, 691
FokI	GGATG	5 cut(s)	35, 252, 255, 337, 405
FspBI	CTAG	4 cut(s)	53, 170, 456, 741
FspI	TGCGCA	1 cut(s)	395
GlaI	GCGC	1 cut(s)	395
HaeIII	GGCC	1 cut(s)	680
HapII	CCGG	1 cut(s)	422
HgaI	GACGC	1 cut(s)	377
HhaI	GCGC	1 cut(s)	396
Hin1II	CATG	4 cut(s)	150, 334, 616, 695
Hin6I	GCGC	1 cut(s)	394
HinP1I	GCGC	1 cut(s)	394
HindIII	AAGCTT	1 cut(s)	757
HinfI	GANTC	3 cut(s)	166, 223, 300
HpaII	CCGG	1 cut(s)	422
Hpy166II	GTNNAC	3 cut(s)	73, 134, 497
Hpy188I	TCNGA	1 cut(s)	594
Hpy188III	TCNNGA	4 cut(s)	85, 272, 422, 613
Hpy8I	GTNNAC	3 cut(s)	73, 134, 497
HpyAV	CCTTC	2 cut(s)	230, 545
HpyCH4III	ACNGT	1 cut(s)	308
HpyCH4IV	ACGT	1 cut(s)	493
HpyCH4V	TGCA	6 cut(s)	34, 150, 243, 350, 486, 569
HpyF10VI	GCNNNNNNNGC	1 cut(s)	356
HpySE526I	ACGT	1 cut(s)	493
Hsp92II	CATG	4 cut(s)	150, 334, 616, 695
HspAI	GCGC	1 cut(s)	394
Kpn2I	TCCGGA	1 cut(s)	421
LweI	GCATC	4 cut(s)	230, 359, 427, 592
MabI	ACCWGGT	1 cut(s)	136
MaeI	CTAG	4 cut(s)	53, 170, 456, 741
MaeII	ACGT	1 cut(s)	493
MaeIII	GTNAC	1 cut(s)	465
MboII	GAAGA	2 cut(s)	243, 523
MluCI	AATT	4 cut(s)	60, 261, 326, 712
MnlI	CCTC	4 cut(s)	106, 328, 514, 670
Mph1103I	ATGCAT	1 cut(s)	352
MroI	TCCGGA	1 cut(s)	421
MroXI	GAANNNNTTC	1 cut(s)	16
MseI	TTAA	2 cut(s)	8, 258
MslI	CAYNNNNRTG	3 cut(s)	231, 317, 611
MspI	CCGG	1 cut(s)	422
MspR9I	CCNGG	1 cut(s)	138
Mva1269I	GAATGC	1 cut(s)	352
MvaI	CCWGG	1 cut(s)	138
MwoI	GCNNNNNNNGC	1 cut(s)	356
NcoI	CCATGG	1 cut(s)	691
NlaIII	CATG	4 cut(s)	150, 334, 616, 695
NlaIV	GGNNCC	1 cut(s)	83
NmuCI	GTSAC	1 cut(s)	465
NsbI	TGCGCA	1 cut(s)	395
NsiI	ATGCAT	1 cut(s)	352
NspI	RCATGY	1 cut(s)	150
PagI	TCATGA	1 cut(s)	612
PceI	AGGCCT	1 cut(s)	680
PctI	GAATGC	1 cut(s)	352
PdmI	GAANNNNTTC	1 cut(s)	16
PfeI	GAWTC	3 cut(s)	166, 223, 300
PflMI	CCANNNNNTGG	1 cut(s)	692
PshAI	GACNNNNGTC	1 cut(s)	463
Psp6I	CCWGG	1 cut(s)	136
PspGI	CCWGG	1 cut(s)	136
PspN4I	GGNNCC	1 cut(s)	83
PspPI	GGNCC	1 cut(s)	497
RsaI	GTAC	1 cut(s)	624
RsaNI	GTAC	1 cut(s)	623
RseI	CAYNNNNRTG	3 cut(s)	231, 317, 611
SaqAI	TTAA	2 cut(s)	8, 258
Sau96I	GGNCC	1 cut(s)	497
ScrFI	CCNGG	1 cut(s)	138
SetI	ASST	9 cut(s)	117, 139, 403, 457, 467, 496, 556, 633, 761
SexAI	ACCWGGT	1 cut(s)	136
SfaNI	GCATC	4 cut(s)	230, 359, 427, 592
SinI	GGWCC	1 cut(s)	497
SmiMI	CAYNNNNRTG	3 cut(s)	231, 317, 611
SpeI	ACTAGT	1 cut(s)	740
Sse9I	AATT	4 cut(s)	60, 261, 326, 712
SseBI	AGGCCT	1 cut(s)	680
SspI	AATATT	2 cut(s)	445, 647
SspMI	CTAG	4 cut(s)	53, 170, 456, 741
StuI	AGGCCT	1 cut(s)	680
StyD4I	CCNGG	1 cut(s)	136
StyI	CCWWGG	1 cut(s)	691
TaaI	ACNGT	1 cut(s)	308
TaiI	ACGT	1 cut(s)	496
TaqI	TCGA	3 cut(s)	231, 303, 636
TasI	AATT	4 cut(s)	60, 261, 326, 712
TfiI	GAWTC	3 cut(s)	166, 223, 300
Tru1I	TTAA	2 cut(s)	8, 258
Tru9I	TTAA	2 cut(s)	8, 258
TscAI	CASTG	2 cut(s)	83, 198
TseFI	GTSAC	1 cut(s)	465
Tsp45I	GTSAC	1 cut(s)	465
TspDTI	ATGAA	8 cut(s)	215, 243, 249, 319, 524, 564, 601, 629
TspRI	CASTG	2 cut(s)	83, 198
Van91I	CCANNNNNTGG	1 cut(s)	692
VpaK11BI	GGWCC	1 cut(s)	497
XapI	RAATTY	3 cut(s)	261, 326, 712
XceI	RCATGY	1 cut(s)	150
XmnI	GAANNNNTTC	1 cut(s)	16
XspI	CTAG	4 cut(s)	53, 170, 456, 741
Zsp2I	ATGCAT	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.