RLG00000014802
MYB Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000883
Physical Location & Seq
Reverse (-)
57725161 .. 57726287
1127 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014802

Sequence Viewer

Length: 1035 bp
ATGAGTTCCGGAGCTACTTCAAGCAAATCAAAAAAAGCTGGAAGGGGCCAAAACAAGCGTTTCTGGACAACCAAGGAAGATGATGTATTGGTCAGTTCTTTATTGGAACTCTACCATGATCCTAAGTGGCGTGTGGATACTGGCTTCAAAAATGGTTACTTGCAGAAATTACAAGATATGATAGAAGCCAAACTTCCAAACTGTGGGATACTGGCAAATCCACACATTGAATCAAGAATAAAGACATTGAAAGGGAAATATGTTGCATTAAGCGAAGCATTATCTCAGAGTGGTTTTGGATGGAATGAAGAAGCAATGATGTTGGATTGTGAAAGAAGTGTATTCGATGAGTGGGCAAAGAACAAAAAAGATGCAAAAGGTTTGTATGGTAAACCATTTGAACATTATTATGCCCTTGGAGAGATATATGGAAAAGATCGTGCAATGGGAACAAATGCGGGAAATGCTGAAGATGATGAAGAAGAAGTTAGAGAAGAGGATGCAAGCATGAATCAAGAAGGTGTACGAGCTGATGACTTTTTTGAACAAATGAACATGACTACTGATGGTGGATCTCAGTATAGGGGATCACAATTTGAGGGGCTTGGTGAAACGGAAGAAGATGATATATCTTTTATACAACCAAGTCCCCCCCAACCACCAAGTGCCAAGCAACGTGCCAAACAGCAGAGGTCAGCTCAAGATGTAGCAAATGCTCCAAATAATACTCGTAGAAAGGCAAGAGCTTTGGATGATATGGCTAAAAAATTTGGAGTGATCACTGAAGCCATTGCAGGAATGGCTCCAAAGTTTGAAGGCTTGATTAATGTTCTCTCAACAGATAAGGATCTTGCTGATATGCAAGGCAAACTTGGTGGTGAGCTGAGGAAAATGGATTTCCTATCTCCATTGCAGGTATTTCACGTCACCAACAAATTAGCTAAAGAGCATGACTTGTTGAGGGTCTTCTTCACCATGACTGATGAGGAAAAGAAGGATTACATAATCAACCTTCTGCAATATGGCCTACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

345

Amino Acids

38.68

Weight (kDa)

5.31

Isoelectric Point (pI)

48.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 22 - 116 2e-07 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 904
AccB7I CCANNNNNTGG 1 cut(s) 203
AccIII TCCGGA 1 cut(s) 8
AciI CCGC 1 cut(s) 458
AclWI GGATC 4 cut(s) 113, 580, 595, 855
AcsI RAATTY 1 cut(s) 767
AcuI CTGAAG 2 cut(s) 489, 804
AdeI CACNNNGTG 1 cut(s) 665
AfaI GTAC 1 cut(s) 525
AfiI CCNNNNNNNGG 1 cut(s) 203
AgsI TTSAA 7 cut(s) 21, 148, 230, 250, 401, 545, 815
AjiI CACGTC 1 cut(s) 925
AluBI AGCT 7 cut(s) 14, 38, 530, 698, 746, 883, 941
AluI AGCT 7 cut(s) 14, 38, 530, 698, 746, 883, 941
AlwI GGATC 4 cut(s) 113, 580, 595, 855
Aor13HI TCCGGA 1 cut(s) 8
AoxI GGCC 2 cut(s) 46, 1024
ApoI RAATTY 1 cut(s) 767
AseI ATTAAT 1 cut(s) 825
AspS9I GGNCC 1 cut(s) 46
AsuHPI GGTGA 4 cut(s) 620, 890, 919, 964
BbsI GAAGAC 1 cut(s) 958
BbvCI CCTCAGC 1 cut(s) 884
BccI CCATC 2 cut(s) 294, 560
BciVI GTATCC 2 cut(s) 130, 201
BclI TGATCA 1 cut(s) 777
BfmI CTRYAG 1 cut(s) 1028
BfuAI ACCTGC 1 cut(s) 904
BfuI GTATCC 2 cut(s) 130, 201
BmgBI CACGTC 1 cut(s) 925
BmgT120I GGNCC 1 cut(s) 46
BmiI GGNNCC 2 cut(s) 47, 804
BmsI GCATC 2 cut(s) 361, 490
BpiI GAAGAC 1 cut(s) 958
BplI GAGNNNNNCTC 2 cut(s) 682, 714
Bpu10I CCTNAGC 1 cut(s) 884
BpuEI CTTGAG 1 cut(s) 684
BsaBI GATNNNNATC 1 cut(s) 846
BsaJI CCNNGG 2 cut(s) 72, 415
BsaWI WCCGGW 1 cut(s) 8
Bsc4I CCNNNNNNNGG 1 cut(s) 203
Bse1I ACTGG 2 cut(s) 145, 216
Bse3DI GCAATG 4 cut(s) 321, 450, 789, 908
Bse8I GATNNNNATC 1 cut(s) 846
BseAI TCCGGA 1 cut(s) 8
BseDI CCNNGG 2 cut(s) 72, 415
BseGI GGATG 3 cut(s) 305, 505, 757
BseJI GATNNNNATC 1 cut(s) 846
BseLI CCNNNNNNNGG 1 cut(s) 203
BseMI GCAATG 4 cut(s) 321, 450, 789, 908
BseMII CTCAG 3 cut(s) 299, 590, 875
BseNI ACTGG 2 cut(s) 145, 216
BshFI GGCC 2 cut(s) 48, 1026
BsiSI CCGG 1 cut(s) 9
BslFI GGGAC 1 cut(s) 633
BslI CCNNNNNNNGG 1 cut(s) 203
BsmFI GGGAC 1 cut(s) 633
BsnI GGCC 2 cut(s) 48, 1026
Bsp13I TCCGGA 1 cut(s) 8
Bsp143I GATC 6 cut(s) 118, 436, 572, 587, 777, 847
BspACI CCGC 1 cut(s) 458
BspANI GGCC 2 cut(s) 48, 1026
BspCNI CTCAG 3 cut(s) 298, 589, 876
BspEI TCCGGA 1 cut(s) 8
BspLI GGNNCC 2 cut(s) 47, 804
BspMI ACCTGC 1 cut(s) 904
BspPI GGATC 4 cut(s) 113, 580, 595, 855
BsrDI GCAATG 4 cut(s) 321, 450, 789, 908
BsrI ACTGG 2 cut(s) 145, 216
BssECI CCNNGG 2 cut(s) 72, 415
BssMI GATC 6 cut(s) 118, 436, 572, 587, 777, 847
BssT1I CCWWGG 2 cut(s) 72, 415
Bst4CI ACNGT 2 cut(s) 203, 1032
Bst6I CTCTTC 1 cut(s) 489
BstC8I GCNNGC 1 cut(s) 505
BstDEI CTNAG 4 cut(s) 123, 285, 576, 884
BstF5I GGATG 3 cut(s) 305, 505, 757
BstKTI GATC 6 cut(s) 121, 439, 575, 590, 780, 850
BstMBI GATC 6 cut(s) 118, 436, 572, 587, 777, 847
BstMWI GCNNNNNNNGC 2 cut(s) 464, 800
BstSFI CTRYAG 1 cut(s) 1028
BstV2I GAAGAC 1 cut(s) 958
BstX2I RGATCY 2 cut(s) 572, 847
BstYI RGATCY 2 cut(s) 572, 847
BsuI GTATCC 2 cut(s) 130, 201
BsuRI GGCC 2 cut(s) 48, 1026
BtrI CACGTC 1 cut(s) 925
BtsCI GGATG 3 cut(s) 305, 505, 757
BtsIMutI CAGTG 1 cut(s) 780
BveI ACCTGC 1 cut(s) 904
Cac8I GCNNGC 1 cut(s) 505
Cfr13I GGNCC 1 cut(s) 46
Csp6I GTAC 1 cut(s) 524
CspCI CAANNNNNGTGG 2 cut(s) 856, 891
CviAII CATG 5 cut(s) 116, 508, 556, 950, 976
CviQI GTAC 1 cut(s) 524
DdeI CTNAG 4 cut(s) 123, 285, 576, 884
DpnI GATC 6 cut(s) 120, 438, 574, 589, 779, 849
DpnII GATC 6 cut(s) 118, 436, 572, 587, 777, 847
DraIII CACNNNGTG 1 cut(s) 665
Eam1104I CTCTTC 1 cut(s) 489
EarI CTCTTC 1 cut(s) 489
Eco130I CCWWGG 2 cut(s) 72, 415
Eco57I CTGAAG 2 cut(s) 489, 804
EcoT14I CCWWGG 2 cut(s) 72, 415
ErhI CCWWGG 2 cut(s) 72, 415
FaeI CATG 5 cut(s) 119, 511, 559, 953, 979
FalI AAGNNNNNCTT 4 cut(s) 177, 209, 855, 887
FaqI GGGAC 1 cut(s) 633
FatI CATG 5 cut(s) 115, 507, 555, 949, 975
FauI CCCGC 1 cut(s) 451
FbaI TGATCA 1 cut(s) 777
FokI GGATG 3 cut(s) 312, 512, 764
HaeIII GGCC 2 cut(s) 48, 1026
HapII CCGG 1 cut(s) 9
Hin1II CATG 5 cut(s) 119, 511, 559, 953, 979
HinfI GANTC 2 cut(s) 230, 511
HpaII CCGG 1 cut(s) 9
HphI GGTGA 4 cut(s) 620, 890, 919, 964
Hpy166II GTNNAC 2 cut(s) 392, 524
Hpy188I TCNGA 1 cut(s) 288
Hpy188III TCNNGA 5 cut(s) 9, 64, 234, 515, 701
Hpy8I GTNNAC 2 cut(s) 392, 524
HpyAV CCTTC 5 cut(s) 36, 512, 809, 988, 1022
HpyCH4III ACNGT 2 cut(s) 203, 1032
HpyCH4IV ACGT 2 cut(s) 676, 924
HpyCH4V TGCA 9 cut(s) 163, 266, 374, 443, 503, 794, 862, 913, 1018
HpyF10VI GCNNNNNNNGC 2 cut(s) 464, 800
HpyF3I CTNAG 4 cut(s) 123, 285, 576, 884
HpySE526I ACGT 2 cut(s) 676, 924
Hsp92II CATG 5 cut(s) 119, 511, 559, 953, 979
Kpn2I TCCGGA 1 cut(s) 8
Ksp22I TGATCA 1 cut(s) 777
Kzo9I GATC 6 cut(s) 118, 436, 572, 587, 777, 847
LmnI GCTCC 3 cut(s) 11, 721, 808
LpnPI CCDG 7 cut(s) 22, 24, 49, 126, 197, 780, 899
LweI GCATC 2 cut(s) 361, 490
MaeII ACGT 2 cut(s) 676, 924
MaeIII GTNAC 2 cut(s) 155, 925
MalI GATC 6 cut(s) 120, 438, 574, 589, 779, 849
MboI GATC 6 cut(s) 118, 436, 572, 587, 777, 847
MflI RGATCY 2 cut(s) 572, 847
MluCI AATT 4 cut(s) 167, 593, 767, 935
MmeI TCCRAC 1 cut(s) 303
MnlI CCTC 6 cut(s) 490, 592, 684, 879, 954, 979
MroI TCCGGA 1 cut(s) 8
MseI TTAA 2 cut(s) 269, 825
MslI CAYNNNNRTG 1 cut(s) 408
MspI CCGG 1 cut(s) 9
MwoI GCNNNNNNNGC 2 cut(s) 464, 800
NdeII GATC 6 cut(s) 118, 436, 572, 587, 777, 847
NlaIII CATG 5 cut(s) 119, 511, 559, 953, 979
NlaIV GGNNCC 2 cut(s) 47, 804
NmuCI GTSAC 1 cut(s) 925
PfeI GAWTC 2 cut(s) 230, 511
PflMI CCANNNNNTGG 1 cut(s) 203
PshBI ATTAAT 1 cut(s) 825
PspN4I GGNNCC 2 cut(s) 47, 804
PspPI GGNCC 1 cut(s) 46
PsuI RGATCY 2 cut(s) 572, 847
RsaI GTAC 1 cut(s) 525
RsaNI GTAC 1 cut(s) 524
RseI CAYNNNNRTG 1 cut(s) 408
SaqAI TTAA 2 cut(s) 269, 825
Sau3AI GATC 6 cut(s) 118, 436, 572, 587, 777, 847
Sau96I GGNCC 1 cut(s) 46
SfaNI GCATC 2 cut(s) 361, 490
SfcI CTRYAG 1 cut(s) 1028
SmiMI CAYNNNNRTG 1 cut(s) 408
SmlI CTYRAG 1 cut(s) 699
SmoI CTYRAG 1 cut(s) 699
Sse9I AATT 4 cut(s) 167, 593, 767, 935
SsiI CCGC 1 cut(s) 458
StyI CCWWGG 2 cut(s) 72, 415
TaaI ACNGT 2 cut(s) 203, 1032
TaiI ACGT 2 cut(s) 679, 927
TaqI TCGA 1 cut(s) 345
TasI AATT 4 cut(s) 167, 593, 767, 935
TfiI GAWTC 2 cut(s) 230, 511
Tru1I TTAA 2 cut(s) 269, 825
Tru9I TTAA 2 cut(s) 269, 825
TscAI CASTG 1 cut(s) 787
TseFI GTSAC 1 cut(s) 925
Tsp45I GTSAC 1 cut(s) 925
TspDTI ATGAA 4 cut(s) 321, 492, 524, 566
TspGWI ACGGA 1 cut(s) 629
TspRI CASTG 1 cut(s) 787
Van91I CCANNNNNTGG 1 cut(s) 203
VspI ATTAAT 1 cut(s) 825
XapI RAATTY 1 cut(s) 767
XcmI CCANNNNNNNNNTGG 1 cut(s) 796
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.