Rh1DG102500
MYB Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000883
Physical Location & Seq
Reverse (-)
19151863 .. 19157114
5252 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG102500.1

Sequence Viewer

Length: 756 bp
ATGGACGTAACATCCAATCCGAGATGGCTTCCACTCGTACACATCGCATTTCATCATCAACTTCTGATACCATGGTATCAGAACAAAAAGGATGCAAAAGGTTTGTATGGTAAGCCATTTGAACATTATTATGCCCTTGGAGAGATATATGGAAAAGATCGTGCAATGGGAACAAATGCTGGAAATGCTGAAGATGATGAAGAAGAAGTTAGGGAAGAGGATGCAAGCATGAATCAAGAGGGTGTACGAGCTGATGACTTTTTTGAACAAATGAACATGACTACTGATGGTGGATCTCAGTATAGGGGATCACAATTTGAGGGGCTTGGTGAAACGGAAGATGATGATATATCTTTTATACAACCAAGTCCCCCCCAACCACCAAGTGCCAAGCAACGTGCCAAACAGCAGAGATCAACTCAAGATGTAACAAATGCTCCAAATAATACTCGTAGAAAGGCAAGAGCTTTGGATGATATGGCTAAAAAATTTGGAGTGATCACTGAAGCCATTGCAGGAATGGCTCCAAAGTTTGAAGGCTTGATTAATGTTCTCTCAACAGATAAGGATCTTGTTGATATGCAAGGCAAACTTGGTGGTGAGCTGAGGAAAATGGATTTCCTATCTCCATTGCAGGTATTTCACGTCACCAACAAATTAGCTAAAGAGCATGACTTGTTGAGGGTCTTCTTCACCATGACTGATGAGGAAAAGAAGGATTACATAATCAACCTTCTGCAATATGGCCTACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

251

Amino Acids

28.49

Weight (kDa)

5.07

Isoelectric Point (pI)

45.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 625
AclWI GGATC 3 cut(s) 301, 316, 576
AcsI RAATTY 1 cut(s) 488
AcuI CTGAAG 2 cut(s) 210, 525
AdeI CACNNNGTG 1 cut(s) 386
AfaI GTAC 2 cut(s) 39, 246
AgsI TTSAA 3 cut(s) 122, 266, 536
AjiI CACGTC 1 cut(s) 646
AluBI AGCT 4 cut(s) 251, 467, 604, 662
AluI AGCT 4 cut(s) 251, 467, 604, 662
AlwI GGATC 3 cut(s) 301, 316, 576
AoxI GGCC 1 cut(s) 745
ApoI RAATTY 1 cut(s) 488
AseI ATTAAT 1 cut(s) 546
AsuHPI GGTGA 4 cut(s) 341, 611, 640, 685
BaeI ACNNNNGTAYC 4 cut(s) 59, 59, 92, 92
BbsI GAAGAC 1 cut(s) 679
BbvCI CCTCAGC 1 cut(s) 605
BccI CCATC 2 cut(s) 18, 281
BclI TGATCA 1 cut(s) 498
BfmI CTRYAG 1 cut(s) 749
BfuAI ACCTGC 1 cut(s) 625
BmgBI CACGTC 1 cut(s) 646
BmiI GGNNCC 1 cut(s) 525
BmsI GCATC 2 cut(s) 82, 211
BpiI GAAGAC 1 cut(s) 679
BplI GAGNNNNNCTC 2 cut(s) 403, 435
Bpu10I CCTNAGC 1 cut(s) 605
BpuEI CTTGAG 1 cut(s) 405
BsaBI GATNNNNATC 1 cut(s) 567
BsaJI CCNNGG 2 cut(s) 71, 136
BsaXI ACNNNNNCTCC 2 cut(s) 421, 451
Bse3DI GCAATG 3 cut(s) 171, 510, 629
Bse8I GATNNNNATC 1 cut(s) 567
BseDI CCNNGG 2 cut(s) 71, 136
BseGI GGATG 4 cut(s) 11, 97, 226, 478
BseJI GATNNNNATC 1 cut(s) 567
BseMI GCAATG 3 cut(s) 171, 510, 629
BseMII CTCAG 2 cut(s) 311, 596
BshFI GGCC 1 cut(s) 747
BslFI GGGAC 1 cut(s) 354
BsmFI GGGAC 1 cut(s) 354
BsnI GGCC 1 cut(s) 747
Bsp143I GATC 6 cut(s) 157, 293, 308, 413, 498, 568
Bsp19I CCATGG 1 cut(s) 71
BspANI GGCC 1 cut(s) 747
BspCNI CTCAG 2 cut(s) 310, 597
BspLI GGNNCC 1 cut(s) 525
BspMI ACCTGC 1 cut(s) 625
BspPI GGATC 3 cut(s) 301, 316, 576
BsrDI GCAATG 3 cut(s) 171, 510, 629
BssECI CCNNGG 2 cut(s) 71, 136
BssMI GATC 6 cut(s) 157, 293, 308, 413, 498, 568
BssT1I CCWWGG 2 cut(s) 71, 136
Bst4CI ACNGT 1 cut(s) 753
Bst6I CTCTTC 1 cut(s) 210
BstC8I GCNNGC 1 cut(s) 226
BstDEI CTNAG 2 cut(s) 297, 605
BstDSI CCRYGG 1 cut(s) 71
BstF5I GGATG 4 cut(s) 11, 97, 226, 478
BstKTI GATC 6 cut(s) 160, 296, 311, 416, 501, 571
BstMBI GATC 6 cut(s) 157, 293, 308, 413, 498, 568
BstMWI GCNNNNNNNGC 2 cut(s) 185, 521
BstSFI CTRYAG 1 cut(s) 749
BstV2I GAAGAC 1 cut(s) 679
BstX2I RGATCY 2 cut(s) 293, 568
BstYI RGATCY 2 cut(s) 293, 568
BsuRI GGCC 1 cut(s) 747
BtgI CCRYGG 1 cut(s) 71
BtgZI GCGATG 1 cut(s) 28
BtrI CACGTC 1 cut(s) 646
BtsCI GGATG 4 cut(s) 11, 97, 226, 478
BtsIMutI CAGTG 1 cut(s) 501
BveI ACCTGC 1 cut(s) 625
Cac8I GCNNGC 1 cut(s) 226
Csp6I GTAC 2 cut(s) 38, 245
CspCI CAANNNNNGTGG 2 cut(s) 577, 612
CviAII CATG 5 cut(s) 72, 229, 277, 671, 697
CviQI GTAC 2 cut(s) 38, 245
DdeI CTNAG 2 cut(s) 297, 605
DpnI GATC 6 cut(s) 159, 295, 310, 415, 500, 570
DpnII GATC 6 cut(s) 157, 293, 308, 413, 498, 568
DraIII CACNNNGTG 1 cut(s) 386
Eam1104I CTCTTC 1 cut(s) 210
EarI CTCTTC 1 cut(s) 210
Eco130I CCWWGG 2 cut(s) 71, 136
Eco57I CTGAAG 2 cut(s) 210, 525
EcoT14I CCWWGG 2 cut(s) 71, 136
ErhI CCWWGG 2 cut(s) 71, 136
FaeI CATG 5 cut(s) 75, 232, 280, 674, 700
FalI AAGNNNNNCTT 2 cut(s) 576, 608
FaqI GGGAC 1 cut(s) 354
FatI CATG 5 cut(s) 71, 228, 276, 670, 696
FbaI TGATCA 1 cut(s) 498
FokI GGATG 3 cut(s) 104, 233, 485
HaeIII GGCC 1 cut(s) 747
Hin1II CATG 5 cut(s) 75, 232, 280, 674, 700
HinfI GANTC 1 cut(s) 232
HphI GGTGA 4 cut(s) 341, 611, 640, 685
Hpy166II GTNNAC 2 cut(s) 40, 245
Hpy188I TCNGA 3 cut(s) 21, 66, 81
Hpy188III TCNNGA 2 cut(s) 236, 422
Hpy8I GTNNAC 2 cut(s) 40, 245
HpyAV CCTTC 3 cut(s) 530, 709, 743
HpyCH4III ACNGT 1 cut(s) 753
HpyCH4IV ACGT 3 cut(s) 6, 397, 645
HpyCH4V TGCA 7 cut(s) 95, 164, 224, 515, 583, 634, 739
HpyF10VI GCNNNNNNNGC 2 cut(s) 185, 521
HpyF3I CTNAG 2 cut(s) 297, 605
HpySE526I ACGT 3 cut(s) 6, 397, 645
Hsp92II CATG 5 cut(s) 75, 232, 280, 674, 700
Ksp22I TGATCA 1 cut(s) 498
Kzo9I GATC 6 cut(s) 157, 293, 308, 413, 498, 568
LmnI GCTCC 2 cut(s) 442, 529
LpnPI CCDG 3 cut(s) 165, 501, 620
LweI GCATC 2 cut(s) 82, 211
MaeII ACGT 3 cut(s) 6, 397, 645
MaeIII GTNAC 3 cut(s) 7, 427, 646
MalI GATC 6 cut(s) 159, 295, 310, 415, 500, 570
MboI GATC 6 cut(s) 157, 293, 308, 413, 498, 568
MboII GAAGA 7 cut(s) 203, 212, 215, 227, 350, 679, 682
MflI RGATCY 2 cut(s) 293, 568
MluCI AATT 3 cut(s) 314, 488, 656
MnlI CCTC 6 cut(s) 211, 232, 313, 600, 675, 700
MseI TTAA 1 cut(s) 546
MslI CAYNNNNRTG 1 cut(s) 129
MwoI GCNNNNNNNGC 2 cut(s) 185, 521
NcoI CCATGG 1 cut(s) 71
NdeII GATC 6 cut(s) 157, 293, 308, 413, 498, 568
NlaIII CATG 5 cut(s) 75, 232, 280, 674, 700
NlaIV GGNNCC 1 cut(s) 525
NmuCI GTSAC 1 cut(s) 646
PfeI GAWTC 1 cut(s) 232
PshBI ATTAAT 1 cut(s) 546
PspN4I GGNNCC 1 cut(s) 525
PsuI RGATCY 2 cut(s) 293, 568
RsaI GTAC 2 cut(s) 39, 246
RsaNI GTAC 2 cut(s) 38, 245
RseI CAYNNNNRTG 1 cut(s) 129
SaqAI TTAA 1 cut(s) 546
Sau3AI GATC 6 cut(s) 157, 293, 308, 413, 498, 568
SfaNI GCATC 2 cut(s) 82, 211
SfcI CTRYAG 1 cut(s) 749
SmiMI CAYNNNNRTG 1 cut(s) 129
SmlI CTYRAG 1 cut(s) 420
SmoI CTYRAG 1 cut(s) 420
Sse9I AATT 3 cut(s) 314, 488, 656
StyI CCWWGG 2 cut(s) 71, 136
TaaI ACNGT 1 cut(s) 753
TaiI ACGT 3 cut(s) 9, 400, 648
TasI AATT 3 cut(s) 314, 488, 656
TfiI GAWTC 1 cut(s) 232
Tru1I TTAA 1 cut(s) 546
Tru9I TTAA 1 cut(s) 546
TscAI CASTG 1 cut(s) 508
TseFI GTSAC 1 cut(s) 646
Tsp45I GTSAC 1 cut(s) 646
TspDTI ATGAA 4 cut(s) 41, 213, 245, 287
TspGWI ACGGA 1 cut(s) 350
TspRI CASTG 1 cut(s) 508
VspI ATTAAT 1 cut(s) 546
XapI RAATTY 1 cut(s) 488
XcmI CCANNNNNNNNNTGG 1 cut(s) 517
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.