DDE superfamily endonuclease
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 46 |
| AcsI | RAATTY | 2 cut(s) | 198, 258 |
| AgsI | TTSAA | 1 cut(s) | 295 |
| AjiI | CACGTC | 1 cut(s) | 67 |
| AluBI | AGCT | 2 cut(s) | 25, 83 |
| AluI | AGCT | 2 cut(s) | 25, 83 |
| Alw26I | GTCTC | 2 cut(s) | 234, 255 |
| AoxI | GGCC | 1 cut(s) | 166 |
| ApoI | RAATTY | 2 cut(s) | 198, 258 |
| AsuHPI | GGTGA | 3 cut(s) | 32, 61, 106 |
| BbsI | GAAGAC | 2 cut(s) | 100, 276 |
| BbvCI | CCTCAGC | 1 cut(s) | 26 |
| BccI | CCATC | 1 cut(s) | 225 |
| BcoDI | GTCTC | 2 cut(s) | 234, 255 |
| BfuAI | ACCTGC | 1 cut(s) | 46 |
| BmgBI | CACGTC | 1 cut(s) | 67 |
| BpiI | GAAGAC | 2 cut(s) | 100, 276 |
| Bpu10I | CCTNAGC | 1 cut(s) | 26 |
| Bsa29I | ATCGAT | 1 cut(s) | 123 |
| BsaBI | GATNNNNATC | 1 cut(s) | 216 |
| Bse3DI | GCAATG | 1 cut(s) | 50 |
| Bse8I | GATNNNNATC | 1 cut(s) | 216 |
| BseCI | ATCGAT | 1 cut(s) | 123 |
| BseGI | GGATG | 1 cut(s) | 217 |
| BseJI | GATNNNNATC | 1 cut(s) | 216 |
| BseMI | GCAATG | 1 cut(s) | 50 |
| BseMII | CTCAG | 1 cut(s) | 17 |
| BshFI | GGCC | 1 cut(s) | 168 |
| BshVI | ATCGAT | 1 cut(s) | 123 |
| BsmAI | GTCTC | 2 cut(s) | 234, 255 |
| BsnI | GGCC | 1 cut(s) | 168 |
| Bsp143I | GATC | 1 cut(s) | 120 |
| BspANI | GGCC | 1 cut(s) | 168 |
| BspCNI | CTCAG | 1 cut(s) | 18 |
| BspDI | ATCGAT | 1 cut(s) | 123 |
| BspMI | ACCTGC | 1 cut(s) | 46 |
| BsrDI | GCAATG | 1 cut(s) | 50 |
| BssMI | GATC | 1 cut(s) | 120 |
| Bst4CI | ACNGT | 1 cut(s) | 286 |
| BstDEI | CTNAG | 2 cut(s) | 26, 182 |
| BstF5I | GGATG | 1 cut(s) | 217 |
| BstKTI | GATC | 1 cut(s) | 123 |
| BstMAI | GTCTC | 2 cut(s) | 234, 255 |
| BstMBI | GATC | 1 cut(s) | 120 |
| BstV2I | GAAGAC | 2 cut(s) | 100, 276 |
| Bsu15I | ATCGAT | 1 cut(s) | 123 |
| BsuRI | GGCC | 1 cut(s) | 168 |
| BsuTUI | ATCGAT | 1 cut(s) | 123 |
| BtrI | CACGTC | 1 cut(s) | 67 |
| BtsCI | GGATG | 1 cut(s) | 217 |
| BveI | ACCTGC | 1 cut(s) | 46 |
| ClaI | ATCGAT | 1 cut(s) | 123 |
| CspCI | CAANNNNNGTGG | 1 cut(s) | 33 |
| CviAII | CATG | 2 cut(s) | 92, 118 |
| CviJI | RGCY | 3 cut(s) | 25, 83, 168 |
| CviKI_1 | RGCY | 3 cut(s) | 25, 83, 168 |
| DdeI | CTNAG | 2 cut(s) | 26, 182 |
| DpnI | GATC | 1 cut(s) | 122 |
| DpnII | GATC | 1 cut(s) | 120 |
| FaeI | CATG | 2 cut(s) | 95, 121 |
| FaiI | YATR | 6 cut(s) | 93, 119, 146, 165, 299, 309 |
| FalI | AAGNNNNNCTT | 1 cut(s) | 29 |
| FatI | CATG | 2 cut(s) | 91, 117 |
| FokI | GGATG | 1 cut(s) | 204 |
| HaeIII | GGCC | 1 cut(s) | 168 |
| Hin1II | CATG | 2 cut(s) | 95, 121 |
| HphI | GGTGA | 3 cut(s) | 32, 61, 106 |
| Hpy188III | TCNNGA | 1 cut(s) | 254 |
| HpyAV | CCTTC | 2 cut(s) | 130, 164 |
| HpyCH4III | ACNGT | 1 cut(s) | 286 |
| HpyCH4IV | ACGT | 1 cut(s) | 66 |
| HpyCH4V | TGCA | 5 cut(s) | 4, 55, 160, 190, 224 |
| HpyF3I | CTNAG | 2 cut(s) | 26, 182 |
| HpySE526I | ACGT | 1 cut(s) | 66 |
| Hsp92II | CATG | 2 cut(s) | 95, 121 |
| Kzo9I | GATC | 1 cut(s) | 120 |
| LpnPI | CCDG | 3 cut(s) | 41, 208, 234 |
| MaeII | ACGT | 1 cut(s) | 66 |
| MaeIII | GTNAC | 1 cut(s) | 67 |
| MalI | GATC | 1 cut(s) | 122 |
| MboI | GATC | 1 cut(s) | 120 |
| MboII | GAAGA | 3 cut(s) | 100, 103, 281 |
| MluCI | AATT | 3 cut(s) | 77, 198, 258 |
| MmeI | TCCRAC | 1 cut(s) | 246 |
| MnlI | CCTC | 4 cut(s) | 21, 96, 121, 286 |
| NdeII | GATC | 1 cut(s) | 120 |
| NlaIII | CATG | 2 cut(s) | 95, 121 |
| NmuCI | GTSAC | 1 cut(s) | 67 |
| Sau3AI | GATC | 1 cut(s) | 120 |
| SetI | ASST | 6 cut(s) | 27, 60, 69, 85, 156, 278 |
| Sse9I | AATT | 3 cut(s) | 77, 198, 258 |
| TaaI | ACNGT | 1 cut(s) | 286 |
| TaiI | ACGT | 1 cut(s) | 69 |
| TaqI | TCGA | 2 cut(s) | 123, 255 |
| TasI | AATT | 3 cut(s) | 77, 198, 258 |
| TseFI | GTSAC | 1 cut(s) | 67 |
| Tsp45I | GTSAC | 1 cut(s) | 67 |
| XapI | RAATTY | 2 cut(s) | 198, 258 |