Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000883

Physical Location & Seq

Genomic Coordinates Reverse (-)

17205228 .. 17209873

Gene Structure 4646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17822

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2112 bp

ATGATGCAGAATGCACTGAAAGAGTATCTGAATTCTAAGATGACCCGAAACTTTGCGCAGTCTGACAACTTATTGCAACATGACGCGCAGTATCAGGCTCTTGTAGCTTCTCTCTTGAATGGGAACTTGGCAGATGGTTCTTCCAAATTTCAGCAGACCTCACATTTGGATCAAAATCGCTCCCAGACACATAAAAGGAAGCAAGAAGAGCAATGTGTTTTCACTGCTAGTCCTCAGCTAGCATTGAAGGACCACAATCCACTTCTTAATGGTGTACAACAGGAACCTATTTCCGTATGGCGAAAGCATAAGAAAGCTAGACTGGATGTCAATCAAGAGGCTGTGAACGAGCATGTATTCCAGAAGATGCTGCAGAGTGAGAACTCTGCTGAATCGGAAAGAGATCAAATACGTGCATTTTTTCAGCATAATGTGATACCAAATCAAGATCAGCAAGCTATTTTGAATGCTGCTCCACAGTTGGGAATTGATAGAGAAAAGCAGCTGCAATGGATGAGGCACCCAGTTCCACAACAGGATATTGTGCATCAAGCAACTGCAATGCACGCAGTTCCACAACAGGAGAAGGTGCATCAAGCAACTGCAATGCACCAACCTGGTGTTTGTTCACATCGGCTAATGCAGTACCTGTATCATACTCGAACTCGGCCAAATGACAATAGCTTGGCCTATTGGAGGCAATTTGTGGCAGAGTTTTATGACCCCTGTGCCAAAAGAAGGTGGTGTTTGTCCTGCTATGATAAAGTTGGAGATCATGCCCTTGGTATTTCCCCCGACGCAGCTATGGTATCATCATGGCCGTGTGGCATATGTAATTGTCAATCAGGGCGGGGATTTGAGGTGAGTTTTGAAGTGCTTCCAAGGCTAAGTAAAGTAACATTTGAGGGTGGTGTGGTTGATGAACTCTTGTTCCTGGATTTGCCTCGTGAGAGTAGATTTTCTTCAGGATTATTGATGCTAGAATGTGGAAGAGCAGTTCAGAAAAGTGTCTATGAGCGGCTTCAAGTTGTTCATGAAGGTCGACTTCGTATAATTTTCTCTCCTAATTTGAAGATATTGTCCTGGGAATTTTGTACACGCTCTCATGAAATTTTTCTTCGTCGAACTTCTGTTGCACCTCAGGTTTCTGAGTTGGGTAGTGCTGTACGGAATTATCAGTGCTCTATTGATGGTAGAGAATCTAATGGTCTTTCATCCCAAGATGTACAAGCTAGTTGCAATAAGATCCTGGAAGCAGGAGGACAAATTGAAAAAGCTTTGAATCTACATGAGGTCGATTATTTGGGATTTTCTAAGAAATACACTCGGTTCTTACAGATAGCTGATGTTGTTGATAGTATGAAAGATCTAATGACTTTATGTCATAATAAGGGCACTAGCCCACTTGAGAGCCTGAAGAGTTATTGCAAAGGAACTCCCACCAAGCTCCAAAAAAAGAAAATAAGAGGAAAGGGTCAAAAAGAGAGTGCTCAAGGTCTGCCGAAAGACGCGAATAAGTTGATGGCTACATCTTGTGGTCAAATAAAAAGTAATGCAAATCAAAGCTGCTCATCTATCAATACTGAAGGTTTCTCAAATGTGCCAGAATATAACCCCGTTGCGAGCAGAGATAGCAAGTGGCAAACTAGTTTAAACCGGTACACTTCACCATTTGAGGGTCCTAAGACCTCAAATTCAGGACCGTATAAGAATTCAGATGGAAATGGCTTGTTAAATTCAAATTCCTCTATGCAGCAGGATGCTATGCATAACTTAATACAGGAATTTATGAACAGCCGAGCAGTGAATAGGCATGACAGGGACGAAGTCGTCTGGGGAAGTGGGAAAAGTTCAGCGGTAGACGTGCCGTCAGGAGTTTGGGGCCGCCCAGCACCTGCAGCTGCTCTAGGAAATGCTTTGGGCAGTATGCCAGTAAGGACCCGTCAATTGCACTCGAATGCTGCCTTTACTAGGAACTTGTCTGAAGTCGCTGGCAGTTTTCATGGAAAGGTTTTATTTCCGGAATCAGGCTTCAGTACATCTAATGGTTATCATGATCACAATAAGTTTTATGGCAATGACAGTAACCTGAACTATGGTTGGAAGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001666 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009909 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010154 GO:0010243 GO:0010272 GO:0014070 GO:0022414 GO:0032501 GO:0032502 GO:0033554 GO:0035670 GO:0036293 GO:0042221 GO:0042493 GO:0043207 GO:0046677 GO:0046898 GO:0046982 GO:0046983 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048580 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0060090 GO:0060992 GO:0061458 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0090567 GO:0097159 GO:0097305 GO:0099402 GO:1901363 GO:1901654 GO:1901698 GO:1901700 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM_bind

Protein Analysis

703

Amino Acids

78.8

Weight (kDa)

8.88

Isoelectric Point (pI)

50.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LIM_bind	PF01803	212 - 473	6.8e-57	LIM-domain binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000883)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08720 FvH4_3g22621 FvH4_4g11702 FvH4_5g01520 FvH4_5g01520 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g36380 FvH4_6g01730 FvH4_6g09170 FvH4_6g20010 FvH4_6g28113
malus_domestica	MD06G1073100.v1.1
prunus_persica	Prupe.2G067700_v2.0.a1 Prupe.5G091500_v2.0.a1 Prupe.5G091500_v2.0.a1 Prupe.5G091500_v2.0.a1 Prupe.7G013000_v2.0.a1
pyrus_communis	pycom01g10330 pycom06g07250
rosa_chinensis	RchiOBHm_Chr7g0199161 RchiOBHm_Chr7g0199171
rosa_laevigata	RLG00000003809 RLG00000014802
rosa_multiflora	Rmu_sc0004791.1_g000001 Rmu_sc0006115.1_g000003 Rmu_sc0037059.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015450 Rroxscaffold_1G00015460 Rroxscaffold_3G00256990 Rroxscaffold_3G00257000 Rroxscaffold_4G00326050 Rroxscaffold_7G00182010
rosa_rugosa	Rorug03G0005500 Rorug03G0273000 Rorug05G0372800 Rorug05G0372900 Rorug07G0053100
rosa_samantha	Rh1BG202800 Rh1DG102500 Rh3AG101900 Rh3AG320900 Rh3CG107700 Rh3DG355100 Rh7AG176700 Rh7AG176800 Rh7AG365300 Rh7BG180300 Rh7CG185900 Rh7CG186000 Rh7CG384200 Rh7DG179700 Rh7DG179800
rosa_wichuraiana	Rw1G014270 Rw3G028010 Rw7G015540 Rw7G015550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1903
AasI	GACNNNNNNGTC	1 cut(s)	1829
Acc16I	TGCGCA	1 cut(s)	57
Acc36I	ACCTGC	1 cut(s)	1903
AccB1I	GGYRCC	1 cut(s)	519
AccBSI	CCGCTC	1 cut(s)	1018
AccI	GTMKAC	2 cut(s)	1042, 1860
AccII	CGCG	2 cut(s)	86, 1511
AccIII	TCCGGA	1 cut(s)	2020
AciI	CCGC	4 cut(s)	850, 1018, 1856, 1885
AclWI	GGATC	2 cut(s)	177, 1240
AcoI	YGGCCR	2 cut(s)	668, 818
AcsI	RAATTY	9 cut(s)	31, 146, 1088, 1110, 1693, 1711, 1735, 1741, 1784
AcuI	CTGAAG	5 cut(s)	948, 1436, 1605, 2004, 2017
AfaI	GTAC	7 cut(s)	276, 647, 1096, 1167, 1227, 1661, 2038
AfiI	CCNNNNNNNGG	6 cut(s)	482, 696, 738, 1676, 1971, 2027
AgeI	ACCGGT	1 cut(s)	1656
AgsI	TTSAA	9 cut(s)	118, 247, 466, 872, 1025, 1072, 1271, 1282, 1740
AhdI	GACNNNNNGTC	3 cut(s)	326, 1380, 1867
AhlI	ACTAGT	1 cut(s)	1646
AjiI	CACGTC	1 cut(s)	1864
AjnI	CCWGG	4 cut(s)	616, 933, 1082, 1248
AjuI	GAANNNNNNNTTGG	2 cut(s)	110, 142
AloI	GAACNNNNNNTCC	4 cut(s)	915, 947, 981, 1013
Alw21I	GWGCWC	2 cut(s)	1184, 1492
AlwI	GGATC	2 cut(s)	177, 1240
AlwNI	CAGNNNCTG	2 cut(s)	649, 1895
Aor13HI	TCCGGA	1 cut(s)	2020
AoxI	GGCC	5 cut(s)	668, 687, 818, 1882, 2106
ApoI	RAATTY	9 cut(s)	31, 146, 1088, 1110, 1693, 1711, 1735, 1741, 1784
ArsI	GACNNNNNNTTYG	2 cut(s)	148, 180
AsiGI	ACCGGT	1 cut(s)	1656
Asp700I	GAANNNNTTC	2 cut(s)	876, 1113
AspLEI	GCGC	2 cut(s)	58, 88
AspS9I	GGNCC	5 cut(s)	250, 1679, 1700, 1882, 1938
AsuHPI	GGTGA	2 cut(s)	874, 1659
AsuNHI	GCTAGC	1 cut(s)	238
AvaII	GGWCC	4 cut(s)	250, 1679, 1700, 1938
AxyI	CCTNAGG	1 cut(s)	1140
BaeGI	GKGCMC	1 cut(s)	1397
BanI	GGYRCC	1 cut(s)	519
BarI	GAAGNNNNNNTAC	2 cut(s)	946, 978
BauI	CACGAG	1 cut(s)	945
Bbv12I	GWGCWC	2 cut(s)	1184, 1492
BbvCI	CCTCAGC	1 cut(s)	234
BccI	CCATC	4 cut(s)	128, 1184, 1516, 1712
BceAI	ACGGC	2 cut(s)	805, 1852
BciT130I	CCWGG	4 cut(s)	618, 935, 1084, 1250
BclI	TGATCA	1 cut(s)	2056
BcuI	ACTAGT	1 cut(s)	1646
BfaI	CTAG	9 cut(s)	228, 239, 318, 980, 1233, 1398, 1647, 1907, 1971
BfmI	CTRYAG	2 cut(s)	371, 1896
BfuAI	ACCTGC	1 cut(s)	1903
BglII	AGATCT	1 cut(s)	1366
Bme1390I	CCNGG	4 cut(s)	618, 935, 1084, 1250
Bme18I	GGWCC	4 cut(s)	250, 1679, 1700, 1938
BmeRI	GACNNNNNGTC	3 cut(s)	326, 1380, 1867
BmgBI	CACGTC	1 cut(s)	1864
BmgT120I	GGNCC	5 cut(s)	250, 1679, 1700, 1882, 1938
BmiI	GGNNCC	5 cut(s)	285, 521, 1680, 1883, 1940
BmrFI	CCNGG	4 cut(s)	618, 935, 1084, 1250
BmrI	ACTGGG	1 cut(s)	518
BmsI	GCATC	5 cut(s)	357, 556, 601, 966, 1750
BmtI	GCTAGC	1 cut(s)	242
BmuI	ACTGGG	1 cut(s)	518
Bpu10I	CCTNAGC	1 cut(s)	234
BpuEI	CTTGAG	2 cut(s)	1427, 1476
BsaAI	YACGTR	1 cut(s)	413
BsaBI	GATNNNNATC	2 cut(s)	174, 330
BsaJI	CCNNGG	3 cut(s)	781, 881, 1083
BsaWI	WCCGGW	2 cut(s)	1656, 2020
Bsc4I	CCNNNNNNNGG	6 cut(s)	482, 696, 738, 1676, 1971, 2027
Bse118I	RCCGGY	1 cut(s)	1656
Bse1I	ACTGG	3 cut(s)	327, 524, 1931
Bse21I	CCTNAGG	1 cut(s)	1140
Bse3DI	GCAATG	5 cut(s)	218, 515, 567, 612, 2083
Bse8I	GATNNNNATC	2 cut(s)	174, 330
BseAI	TCCGGA	1 cut(s)	2020
BseBI	CCWGG	4 cut(s)	618, 935, 1084, 1250
BseDI	CCNNGG	3 cut(s)	781, 881, 1083
BseGI	GGATG	4 cut(s)	331, 519, 1214, 1765
BseJI	GATNNNNATC	2 cut(s)	174, 330
BseLI	CCNNNNNNNGG	6 cut(s)	482, 696, 738, 1676, 1971, 2027
BseMI	GCAATG	5 cut(s)	218, 515, 567, 612, 2083
BseMII	CTCAG	3 cut(s)	248, 1140, 1154
BseNI	ACTGG	3 cut(s)	327, 524, 1931
BseSI	GKGCMC	1 cut(s)	1397
BseYI	CCCAGC	1 cut(s)	1888
Bsh1236I	CGCG	2 cut(s)	86, 1511
BshFI	GGCC	5 cut(s)	670, 689, 820, 1884, 2108
BshNI	GGYRCC	1 cut(s)	519
BshTI	ACCGGT	1 cut(s)	1656
BsiHKAI	GWGCWC	2 cut(s)	1184, 1492
BsiSI	CCGG	2 cut(s)	1657, 2021
BslFI	GGGAC	1 cut(s)	1835
BslI	CCNNNNNNNGG	6 cut(s)	482, 696, 738, 1676, 1971, 2027
BsmFI	GGGAC	1 cut(s)	1835
BsmI	GAATGC	3 cut(s)	16, 472, 1963
BsnI	GGCC	5 cut(s)	670, 689, 820, 1884, 2108
Bsp1286I	GDGCHC	3 cut(s)	1184, 1397, 1492
Bsp13I	TCCGGA	1 cut(s)	2020
Bsp1407I	TGTACA	3 cut(s)	274, 1094, 1225
Bsp143I	GATC	7 cut(s)	169, 403, 448, 772, 1245, 1366, 2056
BspACI	CCGC	4 cut(s)	850, 1018, 1856, 1885
BspANI	GGCC	5 cut(s)	670, 689, 820, 1884, 2108
BspCNI	CTCAG	3 cut(s)	247, 1141, 1153
BspEI	TCCGGA	1 cut(s)	2020
BspFNI	CGCG	2 cut(s)	86, 1511
BspHI	TCATGA	3 cut(s)	1033, 1105, 2053
BspLI	GGNNCC	5 cut(s)	285, 521, 1680, 1883, 1940
BspMAI	CTGCAG	2 cut(s)	375, 1900
BspMI	ACCTGC	1 cut(s)	1903
BspOI	GCTAGC	1 cut(s)	242
BspPI	GGATC	2 cut(s)	177, 1240
BspQI	GCTCTTC	2 cut(s)	201, 985
BspT107I	GGYRCC	1 cut(s)	519
BsrBI	CCGCTC	1 cut(s)	1018
BsrDI	GCAATG	5 cut(s)	218, 515, 567, 612, 2083
BsrFI	RCCGGY	1 cut(s)	1656
BsrGI	TGTACA	3 cut(s)	274, 1094, 1225
BsrI	ACTGG	3 cut(s)	327, 524, 1931
BssAI	RCCGGY	1 cut(s)	1656
BssECI	CCNNGG	3 cut(s)	781, 881, 1083
BssMI	GATC	7 cut(s)	169, 403, 448, 772, 1245, 1366, 2056
BssSI	CACGAG	1 cut(s)	945
BssT1I	CCWWGG	2 cut(s)	781, 881
Bst2BI	CACGAG	1 cut(s)	945
Bst2UI	CCWGG	4 cut(s)	618, 935, 1084, 1250
Bst4CI	ACNGT	3 cut(s)	480, 1704, 2084
Bst6I	CTCTTC	3 cut(s)	201, 985, 1412
BstAUI	TGTACA	3 cut(s)	274, 1094, 1225
BstBAI	YACGTR	1 cut(s)	413
BstC8I	GCNNGC	5 cut(s)	240, 456, 567, 1624, 1993
BstDEI	CTNAG	7 cut(s)	36, 234, 887, 1140, 1149, 1314, 1683
BstENI	CCTNNNNNAGG	2 cut(s)	694, 1969
BstF5I	GGATG	4 cut(s)	331, 519, 1214, 1765
BstFNI	CGCG	2 cut(s)	86, 1511
BstHHI	GCGC	2 cut(s)	58, 88
BstKTI	GATC	7 cut(s)	172, 406, 451, 775, 1248, 1369, 2059
BstMBI	GATC	7 cut(s)	169, 403, 448, 772, 1245, 1366, 2056
BstMWI	GCNNNNNNNGC	6 cut(s)	104, 208, 566, 883, 1632, 1898
BstNI	CCWGG	4 cut(s)	618, 935, 1084, 1250
BstNSI	RCATGY	1 cut(s)	356
BstSCI	CCNGG	4 cut(s)	616, 933, 1082, 1248
BstSFI	CTRYAG	2 cut(s)	371, 1896
BstSLI	GKGCMC	1 cut(s)	1397
BstUI	CGCG	2 cut(s)	86, 1511
BstX2I	RGATCY	2 cut(s)	1245, 1366
BstYI	RGATCY	2 cut(s)	1245, 1366
Bsu36I	CCTNAGG	1 cut(s)	1140
BsuRI	GGCC	5 cut(s)	670, 689, 820, 1884, 2108
BtrI	CACGTC	1 cut(s)	1864
BtsCI	GGATG	4 cut(s)	331, 519, 1214, 1765
BtsI	GCAGTG	2 cut(s)	222, 1809
BtsIMutI	CAGTG	4 cut(s)	14, 222, 1184, 1809
BveI	ACCTGC	1 cut(s)	1903
Cac8I	GCNNGC	5 cut(s)	240, 456, 567, 1624, 1993
CaiI	CAGNNNCTG	2 cut(s)	649, 1895
CciI	TCATGA	3 cut(s)	1033, 1105, 2053
CfoI	GCGC	2 cut(s)	58, 88
Cfr10I	RCCGGY	1 cut(s)	1656
Cfr13I	GGNCC	5 cut(s)	250, 1679, 1700, 1882, 1938
CseI	GACGC	3 cut(s)	92, 806, 1517
CsiI	ACCWGGT	1 cut(s)	616
Csp6I	GTAC	7 cut(s)	275, 646, 1095, 1166, 1226, 1660, 2037
CspAI	ACCGGT	1 cut(s)	1656
CviQI	GTAC	7 cut(s)	275, 646, 1095, 1166, 1226, 1660, 2037
DdeI	CTNAG	7 cut(s)	36, 234, 887, 1140, 1149, 1314, 1683
DpnI	GATC	7 cut(s)	171, 405, 450, 774, 1247, 1368, 2058
DpnII	GATC	7 cut(s)	169, 403, 448, 772, 1245, 1366, 2056
DraI	TTTAAA	1 cut(s)	1653
DrdI	GACNNNNNNGTC	1 cut(s)	1829
DriI	GACNNNNNGTC	3 cut(s)	326, 1380, 1867
DseDI	GACNNNNNNGTC	1 cut(s)	1829
EaeI	YGGCCR	2 cut(s)	668, 818
Eam1104I	CTCTTC	3 cut(s)	201, 985, 1412
Eam1105I	GACNNNNNGTC	3 cut(s)	326, 1380, 1867
EarI	CTCTTC	3 cut(s)	201, 985, 1412
Eco130I	CCWWGG	2 cut(s)	781, 881
Eco147I	AGGCCT	1 cut(s)	2108
Eco47I	GGWCC	4 cut(s)	250, 1679, 1700, 1938
Eco57I	CTGAAG	5 cut(s)	948, 1436, 1605, 2004, 2017
Eco81I	CCTNAGG	1 cut(s)	1140
EcoNI	CCTNNNNNAGG	2 cut(s)	694, 1969
EcoO109I	RGGNCCY	2 cut(s)	1679, 1938
EcoRI	GAATTC	2 cut(s)	31, 1711
EcoRII	CCWGG	4 cut(s)	616, 933, 1082, 1248
EcoT14I	CCWWGG	2 cut(s)	781, 881
EcoT22I	ATGCAT	1 cut(s)	1770
ErhI	CCWWGG	2 cut(s)	781, 881
FalI	AAGNNNNNCTT	2 cut(s)	1029, 1061
FaqI	GGGAC	1 cut(s)	1835
FauI	CCCGC	1 cut(s)	843
FauNDI	CATATG	1 cut(s)	830
FbaI	TGATCA	1 cut(s)	2056
FblI	GTMKAC	2 cut(s)	1042, 1860
FokI	GGATG	4 cut(s)	338, 526, 1201, 1772
FspBI	CTAG	9 cut(s)	228, 239, 318, 980, 1233, 1398, 1647, 1907, 1971
FspI	TGCGCA	1 cut(s)	57
GlaI	GCGC	2 cut(s)	57, 87
GsaI	CCCAGC	1 cut(s)	1892
HaeIII	GGCC	5 cut(s)	670, 689, 820, 1884, 2108
HapII	CCGG	2 cut(s)	1657, 2021
HgaI	GACGC	3 cut(s)	92, 806, 1517
HhaI	GCGC	2 cut(s)	58, 88
Hin6I	GCGC	2 cut(s)	56, 86
HinP1I	GCGC	2 cut(s)	56, 86
HincII	GTYRAC	1 cut(s)	1043
HindII	GTYRAC	1 cut(s)	1043
HindIII	AAGCTT	1 cut(s)	1275
HinfI	GANTC	4 cut(s)	392, 1199, 1282, 2024
HpaII	CCGG	2 cut(s)	1657, 2021
HphI	GGTGA	2 cut(s)	874, 1659
Hpy166II	GTNNAC	7 cut(s)	275, 346, 629, 1043, 1097, 1662, 1861
Hpy188I	TCNGA	7 cut(s)	30, 64, 397, 1002, 1150, 1717, 1984
Hpy8I	GTNNAC	7 cut(s)	275, 346, 629, 1043, 1097, 1662, 1861
Hpy99I	CGWCG	2 cut(s)	800, 1125
HpyAV	CCTTC	6 cut(s)	241, 580, 732, 1031, 1580, 2098
HpyCH4III	ACNGT	3 cut(s)	480, 1704, 2084
HpyCH4IV	ACGT	2 cut(s)	412, 1863
HpyF10VI	GCNNNNNNNGC	6 cut(s)	104, 208, 566, 883, 1632, 1898
HpyF3I	CTNAG	7 cut(s)	36, 234, 887, 1140, 1149, 1314, 1683
HpySE526I	ACGT	2 cut(s)	412, 1863
HspAI	GCGC	2 cut(s)	56, 86
Kpn2I	TCCGGA	1 cut(s)	2020
Ksp22I	TGATCA	1 cut(s)	2056
Kzo9I	GATC	7 cut(s)	169, 403, 448, 772, 1245, 1366, 2056
LguI	GCTCTTC	2 cut(s)	201, 985
LmnI	GCTCC	3 cut(s)	185, 478, 1452
LweI	GCATC	5 cut(s)	357, 556, 601, 966, 1750
MabI	ACCWGGT	1 cut(s)	616
MaeI	CTAG	9 cut(s)	228, 239, 318, 980, 1233, 1398, 1647, 1907, 1971
MaeII	ACGT	2 cut(s)	412, 1863
MaeIII	GTNAC	2 cut(s)	895, 2084
MalI	GATC	7 cut(s)	171, 405, 450, 774, 1247, 1368, 2058
MbiI	CCGCTC	1 cut(s)	1018
MboI	GATC	7 cut(s)	169, 403, 448, 772, 1245, 1366, 2056
MboII	GAAGA	8 cut(s)	132, 218, 376, 954, 1002, 1084, 1109, 1429
MfeI	CAATTG	1 cut(s)	1946
MflI	RGATCY	2 cut(s)	1245, 1366
MhlI	GDGCHC	3 cut(s)	1184, 1397, 1492
MmeI	TCCRAC	2 cut(s)	748, 2081
Mph1103I	ATGCAT	1 cut(s)	1770
MroI	TCCGGA	1 cut(s)	2020
MroXI	GAANNNNTTC	2 cut(s)	876, 1113
MseI	TTAA	4 cut(s)	267, 1652, 1733, 1775
MslI	CAYNNNNRTG	2 cut(s)	820, 1956
MspA1I	CMGCKG	3 cut(s)	505, 1856, 1901
MspI	CCGG	2 cut(s)	1657, 2021
MspR9I	CCNGG	4 cut(s)	618, 935, 1084, 1250
MssI	GTTTAAAC	1 cut(s)	1653
MunI	CAATTG	1 cut(s)	1946
Mva1269I	GAATGC	3 cut(s)	16, 472, 1963
MvaI	CCWGG	4 cut(s)	618, 935, 1084, 1250
MvnI	CGCG	2 cut(s)	86, 1511
MwoI	GCNNNNNNNGC	6 cut(s)	104, 208, 566, 883, 1632, 1898
NdeI	CATATG	1 cut(s)	830
NdeII	GATC	7 cut(s)	169, 403, 448, 772, 1245, 1366, 2056
NheI	GCTAGC	1 cut(s)	238
NlaIV	GGNNCC	5 cut(s)	285, 521, 1680, 1883, 1940
NmeAIII	GCCGAG	2 cut(s)	646, 1823
NsbI	TGCGCA	1 cut(s)	57
NsiI	ATGCAT	1 cut(s)	1770
NspI	RCATGY	1 cut(s)	356
PagI	TCATGA	3 cut(s)	1033, 1105, 2053
PaqCI	CACCTGC	1 cut(s)	1903
PceI	AGGCCT	1 cut(s)	2108
PciSI	GCTCTTC	2 cut(s)	201, 985
PctI	GAATGC	3 cut(s)	16, 472, 1963
PdmI	GAANNNNTTC	2 cut(s)	876, 1113
PfeI	GAWTC	4 cut(s)	392, 1199, 1282, 2024
PflFI	GACNNNGTC	1 cut(s)	1826
PfoI	TCCNGGA	2 cut(s)	933, 1248
PinAI	ACCGGT	1 cut(s)	1656
PmeI	GTTTAAAC	1 cut(s)	1653
Ppu21I	YACGTR	1 cut(s)	413
PpuMI	RGGWCCY	2 cut(s)	1679, 1938
Psp5II	RGGWCCY	2 cut(s)	1679, 1938
Psp6I	CCWGG	4 cut(s)	616, 933, 1082, 1248
PspFI	CCCAGC	1 cut(s)	1888
PspGI	CCWGG	4 cut(s)	616, 933, 1082, 1248
PspN4I	GGNNCC	5 cut(s)	285, 521, 1680, 1883, 1940
PspPI	GGNCC	5 cut(s)	250, 1679, 1700, 1882, 1938
PspPPI	RGGWCCY	2 cut(s)	1679, 1938
PstI	CTGCAG	2 cut(s)	375, 1900
PstNI	CAGNNNCTG	2 cut(s)	649, 1895
PsuI	RGATCY	2 cut(s)	1245, 1366
PsyI	GACNNNGTC	1 cut(s)	1826
PvuII	CAGCTG	2 cut(s)	505, 1901
RsaI	GTAC	7 cut(s)	276, 647, 1096, 1167, 1227, 1661, 2038
RsaNI	GTAC	7 cut(s)	275, 646, 1095, 1166, 1226, 1660, 2037
RseI	CAYNNNNRTG	2 cut(s)	820, 1956
SalI	GTCGAC	1 cut(s)	1041
SapI	GCTCTTC	2 cut(s)	201, 985
SaqAI	TTAA	4 cut(s)	267, 1652, 1733, 1775
Sau3AI	GATC	7 cut(s)	169, 403, 448, 772, 1245, 1366, 2056
Sau96I	GGNCC	5 cut(s)	250, 1679, 1700, 1882, 1938
ScrFI	CCNGG	4 cut(s)	618, 935, 1084, 1250
SduI	GDGCHC	3 cut(s)	1184, 1397, 1492
SexAI	ACCWGGT	1 cut(s)	616
SfaNI	GCATC	5 cut(s)	357, 556, 601, 966, 1750
SfcI	CTRYAG	2 cut(s)	371, 1896
SinI	GGWCC	4 cut(s)	250, 1679, 1700, 1938
SmiMI	CAYNNNNRTG	2 cut(s)	820, 1956
SmlI	CTYRAG	2 cut(s)	1406, 1491
SmoI	CTYRAG	2 cut(s)	1406, 1491
SpeI	ACTAGT	1 cut(s)	1646
SseBI	AGGCCT	1 cut(s)	2108
SsiI	CCGC	4 cut(s)	850, 1018, 1856, 1885
SspMI	CTAG	9 cut(s)	228, 239, 318, 980, 1233, 1398, 1647, 1907, 1971
StuI	AGGCCT	1 cut(s)	2108
StyD4I	CCNGG	4 cut(s)	616, 933, 1082, 1248
StyI	CCWWGG	2 cut(s)	781, 881
TaaI	ACNGT	3 cut(s)	480, 1704, 2084
TaiI	ACGT	2 cut(s)	415, 1866
TaqI	TCGA	5 cut(s)	661, 1042, 1123, 1296, 1955
TatI	WGTACW	4 cut(s)	274, 1094, 1225, 2036
TauI	GCSGC	2 cut(s)	1021, 1887
TfiI	GAWTC	4 cut(s)	392, 1199, 1282, 2024
Tru1I	TTAA	4 cut(s)	267, 1652, 1733, 1775
Tru9I	TTAA	4 cut(s)	267, 1652, 1733, 1775
TscAI	CASTG	4 cut(s)	21, 229, 1184, 1809
TspDTI	ATGAA	8 cut(s)	936, 1022, 1050, 1122, 1203, 1376, 1805, 1991
TspGWI	ACGGA	2 cut(s)	283, 1183
TspRI	CASTG	4 cut(s)	21, 229, 1184, 1809
Tth111I	GACNNNGTC	1 cut(s)	1826
VpaK11BI	GGWCC	4 cut(s)	250, 1679, 1700, 1938
XagI	CCTNNNNNAGG	2 cut(s)	694, 1969
XapI	RAATTY	9 cut(s)	31, 146, 1088, 1110, 1693, 1711, 1735, 1741, 1784
XceI	RCATGY	1 cut(s)	356
XmiI	GTMKAC	2 cut(s)	1042, 1860
XmnI	GAANNNNTTC	2 cut(s)	876, 1113
XspI	CTAG	9 cut(s)	228, 239, 318, 980, 1233, 1398, 1647, 1907, 1971
Zsp2I	ATGCAT	1 cut(s)	1770

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.