DDE superfamily endonuclease
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Plant_NMP1 | PF06694 | 6 - 126 | 1.2e-60 | Plant nuclear matrix protein 1 (NMP1) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 169 |
| AcuI | CTGAAG | 1 cut(s) | 249 |
| AfaI | GTAC | 1 cut(s) | 100 |
| AgsI | TTSAA | 2 cut(s) | 266, 344 |
| AluBI | AGCT | 5 cut(s) | 87, 215, 269, 298, 310 |
| AluI | AGCT | 5 cut(s) | 87, 215, 269, 298, 310 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 108 |
| BccI | CCATC | 1 cut(s) | 77 |
| BfuAI | ACCTGC | 1 cut(s) | 169 |
| BglII | AGATCT | 1 cut(s) | 124 |
| BmsI | GCATC | 1 cut(s) | 374 |
| BpmI | CTGGAG | 1 cut(s) | 320 |
| BsaJI | CCNNGG | 1 cut(s) | 73 |
| Bse3DI | GCAATG | 1 cut(s) | 198 |
| BseDI | CCNNGG | 1 cut(s) | 73 |
| BseGI | GGATG | 1 cut(s) | 69 |
| BseMI | GCAATG | 1 cut(s) | 198 |
| BseMII | CTCAG | 1 cut(s) | 285 |
| Bsp143I | GATC | 2 cut(s) | 94, 124 |
| BspCNI | CTCAG | 1 cut(s) | 286 |
| BspMI | ACCTGC | 1 cut(s) | 169 |
| BsrDI | GCAATG | 1 cut(s) | 198 |
| BssECI | CCNNGG | 1 cut(s) | 73 |
| BssMI | GATC | 2 cut(s) | 94, 124 |
| BssT1I | CCWWGG | 1 cut(s) | 73 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 26 |
| BstC8I | GCNNGC | 2 cut(s) | 139, 213 |
| BstDEI | CTNAG | 1 cut(s) | 294 |
| BstF5I | GGATG | 1 cut(s) | 69 |
| BstKTI | GATC | 2 cut(s) | 97, 127 |
| BstMBI | GATC | 2 cut(s) | 94, 124 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 26, 386 |
| BstX2I | RGATCY | 1 cut(s) | 124 |
| BstYI | RGATCY | 1 cut(s) | 124 |
| BtsCI | GGATG | 1 cut(s) | 69 |
| BveI | ACCTGC | 1 cut(s) | 169 |
| Cac8I | GCNNGC | 2 cut(s) | 139, 213 |
| Csp6I | GTAC | 1 cut(s) | 99 |
| CviJI | RGCY | 7 cut(s) | 6, 68, 87, 215, 269, 298, 310 |
| CviKI_1 | RGCY | 7 cut(s) | 6, 68, 87, 215, 269, 298, 310 |
| CviQI | GTAC | 1 cut(s) | 99 |
| DdeI | CTNAG | 1 cut(s) | 294 |
| DpnI | GATC | 2 cut(s) | 96, 126 |
| DpnII | GATC | 2 cut(s) | 94, 124 |
| Eco130I | CCWWGG | 1 cut(s) | 73 |
| Eco57I | CTGAAG | 1 cut(s) | 249 |
| EcoT14I | CCWWGG | 1 cut(s) | 73 |
| ErhI | CCWWGG | 1 cut(s) | 73 |
| FaiI | YATR | 3 cut(s) | 272, 274, 401 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 317, 349 |
| FokI | GGATG | 1 cut(s) | 56 |
| GsuI | CTGGAG | 1 cut(s) | 320 |
| HindIII | AAGCTT | 1 cut(s) | 308 |
| HinfI | GANTC | 3 cut(s) | 194, 262, 328 |
| Hpy188I | TCNGA | 4 cut(s) | 229, 261, 295, 316 |
| Hpy188III | TCNNGA | 1 cut(s) | 158 |
| HpyCH4V | TGCA | 3 cut(s) | 29, 237, 395 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 26, 386 |
| HpyF3I | CTNAG | 1 cut(s) | 294 |
| Kzo9I | GATC | 2 cut(s) | 94, 124 |
| LmnI | GCTCC | 1 cut(s) | 301 |
| LpnPI | CCDG | 4 cut(s) | 23, 164, 261, 284 |
| LweI | GCATC | 1 cut(s) | 374 |
| MaeIII | GTNAC | 2 cut(s) | 181, 373 |
| MalI | GATC | 2 cut(s) | 96, 126 |
| MboI | GATC | 2 cut(s) | 94, 124 |
| MboII | GAAGA | 3 cut(s) | 104, 242, 332 |
| MflI | RGATCY | 1 cut(s) | 124 |
| MluCI | AATT | 2 cut(s) | 117, 239 |
| MlyI | GAGTC | 1 cut(s) | 322 |
| MnlI | CCTC | 2 cut(s) | 74, 127 |
| MroXI | GAANNNNTTC | 1 cut(s) | 108 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 26, 386 |
| NdeII | GATC | 2 cut(s) | 94, 124 |
| PdmI | GAANNNNTTC | 1 cut(s) | 108 |
| PfeI | GAWTC | 2 cut(s) | 194, 262 |
| PleI | GAGTC | 1 cut(s) | 322 |
| PpsI | GAGTC | 1 cut(s) | 322 |
| PsuI | RGATCY | 1 cut(s) | 124 |
| RsaI | GTAC | 1 cut(s) | 100 |
| RsaNI | GTAC | 1 cut(s) | 99 |
| Sau3AI | GATC | 2 cut(s) | 94, 124 |
| SchI | GAGTC | 1 cut(s) | 322 |
| SetI | ASST | 8 cut(s) | 89, 183, 217, 271, 300, 312, 354, 375 |
| SfaNI | GCATC | 1 cut(s) | 374 |
| Sse9I | AATT | 2 cut(s) | 117, 239 |
| StyI | CCWWGG | 1 cut(s) | 73 |
| TasI | AATT | 2 cut(s) | 117, 239 |
| TfiI | GAWTC | 2 cut(s) | 194, 262 |
| XmnI | GAANNNNTTC | 1 cut(s) | 108 |