Rroxscaffold_1G00015460
MYB Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000883
Physical Location & Seq
Reverse (-)
19195855 .. 19196771
917 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00015460.1

Sequence Viewer

Length: 726 bp
ATGAGTTCCGGAGCTACTTCAAGCAAATCAAAAAAAGCTGGAAGGGGCCAAAACAAGCGTTTCTGCACAACCAAGGAAGATGATGTATTGCCAAACTTCCAAACTGTGGGATACTTGGCAAATCCACACATTGAATCAAGAATAAAGACATTGAAAGGGAAATATGTTGCATTAAGCGAAGCATTATCTCAAAGTGGTTTTGGATGGAATGAAGAAGCAATGATGTTGGATTGTGAAAGAAGTGTATTCGATGAGTGGGCAAAGAACAAAAAGGATGCAAAAGGTTTGTATGGTAAACCATTTGAACATTATTATGCCCTTGGAGAGATATATGGAAAAGATCGTGCAATGGGAACAAATGCTGGAAATGCTAAAGATGATGAAGAAGAAGTTAGGGAAGAGGATGCAAGCATGAATCAAGAGGGTGTACGAGCTGATGACTTTTTTGAACAAATGAACATGACTACTGATGGTGGATCTCGGTATAGGGGATCACAATTTGAGGGGCTTGGTGAAACGGAAGATGATGATATATCTTTTATACAACCAAGTCCCCCCAACCACCAAGTGCCAAGCAACGTGGCAAACAGCGAGAGATCAACTCAAGATGTAACAAATGCTCCAAATAATACTCGTAGAAAGGCAAGAGCTTTGGATGATATGGCTAAAAAATTTGGAGTGATCACGAAGCCATTGCGGGAATGGCTCCAAAGTTTGAAGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

241

Amino Acids

26.93

Weight (kDa)

5.44

Isoelectric Point (pI)

49.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 106
AccIII TCCGGA 1 cut(s) 8
AciI CCGC 1 cut(s) 697
AclWI GGATC 2 cut(s) 484, 499
AcsI RAATTY 1 cut(s) 671
AdeI CACNNNGTG 1 cut(s) 568
AfaI GTAC 1 cut(s) 429
AfiI CCNNNNNNNGG 1 cut(s) 106
AgsI TTSAA 6 cut(s) 21, 134, 154, 305, 449, 718
AluBI AGCT 4 cut(s) 14, 38, 434, 650
AluI AGCT 4 cut(s) 14, 38, 434, 650
AlwI GGATC 2 cut(s) 484, 499
Aor13HI TCCGGA 1 cut(s) 8
AoxI GGCC 1 cut(s) 46
ApoI RAATTY 1 cut(s) 671
AspS9I GGNCC 1 cut(s) 46
AsuHPI GGTGA 1 cut(s) 524
BccI CCATC 2 cut(s) 198, 464
BcgI CGANNNNNNTGC 2 cut(s) 676, 710
BciVI GTATCC 1 cut(s) 104
BclI TGATCA 1 cut(s) 681
BfuI GTATCC 1 cut(s) 104
BmgT120I GGNCC 1 cut(s) 46
BmiI GGNNCC 2 cut(s) 47, 707
BmsI GCATC 2 cut(s) 265, 394
BplI GAGNNNNNCTC 2 cut(s) 586, 618
BpuEI CTTGAG 1 cut(s) 588
BsaJI CCNNGG 2 cut(s) 72, 319
BsaWI WCCGGW 1 cut(s) 8
BsaXI ACNNNNNCTCC 2 cut(s) 604, 634
Bsc4I CCNNNNNNNGG 1 cut(s) 106
Bse3DI GCAATG 3 cut(s) 225, 354, 692
BseAI TCCGGA 1 cut(s) 8
BseDI CCNNGG 2 cut(s) 72, 319
BseGI GGATG 4 cut(s) 209, 280, 409, 661
BseLI CCNNNNNNNGG 1 cut(s) 106
BseMI GCAATG 3 cut(s) 225, 354, 692
BsgI GTGCAG 1 cut(s) 49
BshFI GGCC 1 cut(s) 48
BsiSI CCGG 1 cut(s) 9
BslFI GGGAC 1 cut(s) 537
BslI CCNNNNNNNGG 1 cut(s) 106
BsmFI GGGAC 1 cut(s) 537
BsnI GGCC 1 cut(s) 48
Bsp13I TCCGGA 1 cut(s) 8
Bsp143I GATC 5 cut(s) 340, 476, 491, 596, 681
BspACI CCGC 1 cut(s) 697
BspANI GGCC 1 cut(s) 48
BspEI TCCGGA 1 cut(s) 8
BspLI GGNNCC 2 cut(s) 47, 707
BspPI GGATC 2 cut(s) 484, 499
BsrDI GCAATG 3 cut(s) 225, 354, 692
BssECI CCNNGG 2 cut(s) 72, 319
BssMI GATC 5 cut(s) 340, 476, 491, 596, 681
BssT1I CCWWGG 2 cut(s) 72, 319
Bst4CI ACNGT 1 cut(s) 106
Bst6I CTCTTC 1 cut(s) 393
BstC8I GCNNGC 1 cut(s) 409
BstF5I GGATG 4 cut(s) 209, 280, 409, 661
BstKTI GATC 5 cut(s) 343, 479, 494, 599, 684
BstMBI GATC 5 cut(s) 340, 476, 491, 596, 681
BstMWI GCNNNNNNNGC 2 cut(s) 368, 703
BstX2I RGATCY 1 cut(s) 476
BstYI RGATCY 1 cut(s) 476
BsuI GTATCC 1 cut(s) 104
BsuRI GGCC 1 cut(s) 48
BtsCI GGATG 4 cut(s) 209, 280, 409, 661
Cac8I GCNNGC 1 cut(s) 409
Cfr13I GGNCC 1 cut(s) 46
Csp6I GTAC 1 cut(s) 428
CspCI CAANNNNNGTGG 2 cut(s) 561, 596
CviAII CATG 2 cut(s) 412, 460
CviQI GTAC 1 cut(s) 428
DpnI GATC 5 cut(s) 342, 478, 493, 598, 683
DpnII GATC 5 cut(s) 340, 476, 491, 596, 681
DraIII CACNNNGTG 1 cut(s) 568
Eam1104I CTCTTC 1 cut(s) 393
EarI CTCTTC 1 cut(s) 393
Eco130I CCWWGG 2 cut(s) 72, 319
EcoT14I CCWWGG 2 cut(s) 72, 319
ErhI CCWWGG 2 cut(s) 72, 319
FaeI CATG 2 cut(s) 415, 463
FaqI GGGAC 1 cut(s) 537
FatI CATG 2 cut(s) 411, 459
FauI CCCGC 1 cut(s) 690
FbaI TGATCA 1 cut(s) 681
FokI GGATG 4 cut(s) 216, 287, 416, 668
HaeIII GGCC 1 cut(s) 48
HapII CCGG 1 cut(s) 9
Hin1II CATG 2 cut(s) 415, 463
HinfI GANTC 2 cut(s) 134, 415
HpaII CCGG 1 cut(s) 9
HphI GGTGA 1 cut(s) 524
Hpy166II GTNNAC 2 cut(s) 296, 428
Hpy188III TCNNGA 5 cut(s) 9, 138, 419, 605, 685
Hpy8I GTNNAC 2 cut(s) 296, 428
HpyAV CCTTC 2 cut(s) 36, 712
HpyCH4III ACNGT 1 cut(s) 106
HpyCH4IV ACGT 1 cut(s) 579
HpyCH4V TGCA 5 cut(s) 66, 170, 278, 347, 407
HpyF10VI GCNNNNNNNGC 2 cut(s) 368, 703
HpySE526I ACGT 1 cut(s) 579
Hsp92II CATG 2 cut(s) 415, 463
Kpn2I TCCGGA 1 cut(s) 8
Ksp22I TGATCA 1 cut(s) 681
Kzo9I GATC 5 cut(s) 340, 476, 491, 596, 681
LmnI GCTCC 3 cut(s) 11, 625, 711
LpnPI CCDG 3 cut(s) 22, 24, 348
LweI GCATC 2 cut(s) 265, 394
MaeII ACGT 1 cut(s) 579
MaeIII GTNAC 1 cut(s) 610
MalI GATC 5 cut(s) 342, 478, 493, 598, 683
MboI GATC 5 cut(s) 340, 476, 491, 596, 681
MboII GAAGA 6 cut(s) 89, 224, 395, 398, 410, 533
MflI RGATCY 1 cut(s) 476
MluCI AATT 2 cut(s) 497, 671
MmeI TCCRAC 1 cut(s) 207
MnlI CCTC 3 cut(s) 394, 415, 496
MroI TCCGGA 1 cut(s) 8
MseI TTAA 1 cut(s) 173
MslI CAYNNNNRTG 1 cut(s) 312
MspI CCGG 1 cut(s) 9
MwoI GCNNNNNNNGC 2 cut(s) 368, 703
NdeII GATC 5 cut(s) 340, 476, 491, 596, 681
NlaIII CATG 2 cut(s) 415, 463
NlaIV GGNNCC 2 cut(s) 47, 707
PfeI GAWTC 2 cut(s) 134, 415
PflMI CCANNNNNTGG 1 cut(s) 106
PspN4I GGNNCC 2 cut(s) 47, 707
PspPI GGNCC 1 cut(s) 46
PsuI RGATCY 1 cut(s) 476
RsaI GTAC 1 cut(s) 429
RsaNI GTAC 1 cut(s) 428
RseI CAYNNNNRTG 1 cut(s) 312
SaqAI TTAA 1 cut(s) 173
Sau3AI GATC 5 cut(s) 340, 476, 491, 596, 681
Sau96I GGNCC 1 cut(s) 46
SetI ASST 6 cut(s) 16, 40, 286, 436, 582, 652
SfaNI GCATC 2 cut(s) 265, 394
SmiMI CAYNNNNRTG 1 cut(s) 312
SmlI CTYRAG 1 cut(s) 603
SmoI CTYRAG 1 cut(s) 603
Sse9I AATT 2 cut(s) 497, 671
SsiI CCGC 1 cut(s) 697
StyI CCWWGG 2 cut(s) 72, 319
TaaI ACNGT 1 cut(s) 106
TaiI ACGT 1 cut(s) 582
TaqI TCGA 1 cut(s) 249
TasI AATT 2 cut(s) 497, 671
TfiI GAWTC 2 cut(s) 134, 415
Tru1I TTAA 1 cut(s) 173
Tru9I TTAA 1 cut(s) 173
TspDTI ATGAA 4 cut(s) 225, 396, 428, 470
TspGWI ACGGA 1 cut(s) 533
Van91I CCANNNNNTGG 1 cut(s) 106
XapI RAATTY 1 cut(s) 671
XcmI CCANNNNNNNNNTGG 1 cut(s) 699
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.