Rmu_sc0006282.1_g000020

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006282.1
OG0021637
Physical Location & Seq
Forward (+)
74583 .. 74966
384 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 384 bp
ctggccacctctctctctctctctctctctctctctctctctcacccatatcttaccgtgtcctccttctcctccacctaccacgactacatctccaccatctgctttgccgccggcgtcatcgcggtctccatcgagtacggcctcttcccgacccggcccatacccgcttgctacgaggactcctgggcctctctccaatgggtcgccaaccacccgaacggaaccaggccggatcaatggctaaacgagtacgctgacttgaaccgcatcttcgtcggcggcgacaacacagaagggaccgatgatgagatgtggctttacataaacaaggagaatgaaggggtgcaggatagcaggttgagctcgccttgccatggttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0009056 GO:0016787 GO:0016788 GO:0044424 GO:0044444 GO:0044464 GO:0052689
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

127

Amino Acids

14.1

Weight (kDa)

4.42

Isoelectric Point (pI)

42.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_3 PF07859 25 - 96 1.8e-13 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 348
AccII CGCG 1 cut(s) 125
AciI CCGC 5 cut(s) 111, 125, 168, 268, 282
AclWI GGATC 1 cut(s) 243
AcoI YGGCCR 1 cut(s) 3
AcyI GRCGYC 1 cut(s) 117
AfaI GTAC 2 cut(s) 140, 254
AfiI CCNNNNNNNGG 1 cut(s) 377
AgsI TTSAA 1 cut(s) 265
AjnI CCWGG 2 cut(s) 185, 227
AluBI AGCT 1 cut(s) 366
AluI AGCT 1 cut(s) 366
Alw21I GWGCWC 1 cut(s) 368
Alw26I GTCTC 1 cut(s) 133
AlwI GGATC 1 cut(s) 243
AoxI GGCC 5 cut(s) 3, 142, 158, 189, 230
AspS9I GGNCC 3 cut(s) 159, 189, 300
AsuC2I CCSGG 1 cut(s) 157
AsuHPI GGTGA 1 cut(s) 35
AvaII GGWCC 1 cut(s) 300
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 368
BarI GAAGNNNNNNTAC 2 cut(s) 131, 163
Bbv12I GWGCWC 1 cut(s) 368
BccI CCATC 2 cut(s) 107, 140
BceAI ACGGC 1 cut(s) 157
BcgI CGANNNNNNTGC 2 cut(s) 259, 293
BciT130I CCWGG 2 cut(s) 187, 229
BcnI CCSGG 1 cut(s) 157
BcoDI GTCTC 1 cut(s) 133
BfuAI ACCTGC 1 cut(s) 348
BisI GCNGC 2 cut(s) 111, 283
BlsI GCNGC 2 cut(s) 112, 284
Bme1390I CCNGG 3 cut(s) 157, 187, 229
Bme18I GGWCC 1 cut(s) 300
BmgT120I GGNCC 3 cut(s) 159, 189, 300
BmiI GGNNCC 2 cut(s) 226, 301
BmrFI CCNGG 3 cut(s) 157, 187, 229
BmsI GCATC 1 cut(s) 279
BpuMI CCSGG 1 cut(s) 157
BsaHI GRCGYC 1 cut(s) 117
BsaI GGTCTC 1 cut(s) 133
BsaJI CCNNGG 2 cut(s) 186, 376
BsaXI ACNNNNNCTCC 4 cut(s) 77, 107, 167, 197
Bsc4I CCNNNNNNNGG 1 cut(s) 377
Bse118I RCCGGY 1 cut(s) 113
BseBI CCWGG 2 cut(s) 187, 229
BseDI CCNNGG 2 cut(s) 186, 376
BseLI CCNNNNNNNGG 1 cut(s) 377
BseRI GAGGAG 1 cut(s) 61
BsgI GTGCAG 1 cut(s) 368
Bsh1236I CGCG 1 cut(s) 125
BshFI GGCC 5 cut(s) 5, 144, 160, 191, 232
BsiHKAI GWGCWC 1 cut(s) 368
BsiSI CCGG 3 cut(s) 114, 157, 233
BslFI GGGAC 1 cut(s) 313
BslI CCNNNNNNNGG 1 cut(s) 377
BsmAI GTCTC 1 cut(s) 133
BsmFI GGGAC 1 cut(s) 313
BsnI GGCC 5 cut(s) 5, 144, 160, 191, 232
Bso31I GGTCTC 1 cut(s) 133
Bsp1286I GDGCHC 1 cut(s) 368
Bsp143I GATC 1 cut(s) 235
Bsp19I CCATGG 1 cut(s) 376
BspACI CCGC 5 cut(s) 111, 125, 168, 268, 282
BspANI GGCC 5 cut(s) 5, 144, 160, 191, 232
BspFNI CGCG 1 cut(s) 125
BspLI GGNNCC 2 cut(s) 226, 301
BspMI ACCTGC 1 cut(s) 348
BspPI GGATC 1 cut(s) 243
BspTNI GGTCTC 1 cut(s) 133
BsrFI RCCGGY 1 cut(s) 113
BssAI RCCGGY 1 cut(s) 113
BssECI CCNNGG 2 cut(s) 186, 376
BssMI GATC 1 cut(s) 235
BssNI GRCGYC 1 cut(s) 117
BssT1I CCWWGG 1 cut(s) 376
Bst2UI CCWGG 2 cut(s) 187, 229
Bst4CI ACNGT 1 cut(s) 58
Bst6I CTCTTC 1 cut(s) 152
BstACI GRCGYC 1 cut(s) 117
BstC8I GCNNGC 3 cut(s) 115, 172, 368
BstDSI CCRYGG 1 cut(s) 376
BstFNI CGCG 1 cut(s) 125
BstKTI GATC 1 cut(s) 238
BstMAI GTCTC 1 cut(s) 133
BstMBI GATC 1 cut(s) 235
BstMWI GCNNNNNNNGC 2 cut(s) 363, 372
BstNI CCWGG 2 cut(s) 187, 229
BstSCI CCNGG 3 cut(s) 155, 185, 227
BstUI CGCG 1 cut(s) 125
BsuRI GGCC 5 cut(s) 5, 144, 160, 191, 232
BtgI CCRYGG 1 cut(s) 376
BtgZI GCGATG 1 cut(s) 106
BveI ACCTGC 1 cut(s) 348
Cac8I GCNNGC 3 cut(s) 115, 172, 368
Cfr10I RCCGGY 1 cut(s) 113
Cfr13I GGNCC 3 cut(s) 159, 189, 300
CseI GACGC 1 cut(s) 106
Csp6I GTAC 2 cut(s) 139, 253
CviAII CATG 1 cut(s) 377
CviJI RGCY 8 cut(s) 5, 144, 160, 191, 232, 244, 319, 366
CviKI_1 RGCY 8 cut(s) 5, 144, 160, 191, 232, 244, 319, 366
CviQI GTAC 2 cut(s) 139, 253
DpnI GATC 1 cut(s) 237
DpnII GATC 1 cut(s) 235
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 152
EarI CTCTTC 1 cut(s) 152
Ecl136II GAGCTC 1 cut(s) 366
Eco130I CCWWGG 1 cut(s) 376
Eco24I GRGCYC 1 cut(s) 368
Eco31I GGTCTC 1 cut(s) 133
Eco47I GGWCC 1 cut(s) 300
Eco53kI GAGCTC 1 cut(s) 366
EcoICRI GAGCTC 1 cut(s) 366
EcoRII CCWGG 2 cut(s) 185, 227
EcoT14I CCWWGG 1 cut(s) 376
EcoT38I GRGCYC 1 cut(s) 368
ErhI CCWWGG 1 cut(s) 376
FaeI CATG 1 cut(s) 380
FaiI YATR 4 cut(s) 49, 164, 326, 378
FaqI GGGAC 1 cut(s) 313
FatI CATG 1 cut(s) 376
FauI CCCGC 1 cut(s) 175
Fnu4HI GCNGC 2 cut(s) 111, 283
FriOI GRGCYC 1 cut(s) 368
Fsp4HI GCNGC 2 cut(s) 111, 283
GluI GCNGC 2 cut(s) 111, 283
HaeIII GGCC 5 cut(s) 5, 144, 160, 191, 232
HapII CCGG 3 cut(s) 114, 157, 233
HgaI GACGC 1 cut(s) 106
Hin1I GRCGYC 1 cut(s) 117
Hin1II CATG 1 cut(s) 380
HinfI GANTC 1 cut(s) 182
HpaII CCGG 3 cut(s) 114, 157, 233
HphI GGTGA 1 cut(s) 35
Hpy188III TCNNGA 1 cut(s) 151
Hpy99I CGWCG 1 cut(s) 281
HpyAV CCTTC 3 cut(s) 76, 290, 335
HpyCH4III ACNGT 1 cut(s) 58
HpyCH4V TGCA 1 cut(s) 349
HpyF10VI GCNNNNNNNGC 2 cut(s) 363, 372
Hsp92I GRCGYC 1 cut(s) 117
Hsp92II CATG 1 cut(s) 380
KroI GCCGGC 1 cut(s) 113
KroNI GCCGGC 1 cut(s) 115
Kzo9I GATC 1 cut(s) 235
LpnPI CCDG 9 cut(s) 127, 170, 172, 199, 214, 241, 246, 335, 343
LweI GCATC 1 cut(s) 279
MalI GATC 1 cut(s) 237
MboI GATC 1 cut(s) 235
MboII GAAGA 2 cut(s) 139, 265
MhlI GDGCHC 1 cut(s) 368
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 176
MnlI CCTC 6 cut(s) 19, 73, 82, 155, 172, 202
Mox20I TGGCCA 1 cut(s) 5
MreI CGCCGGCG 1 cut(s) 113
MroNI GCCGGC 1 cut(s) 113
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 382
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 3 cut(s) 114, 157, 233
MspR9I CCNGG 3 cut(s) 157, 187, 229
MvaI CCWGG 2 cut(s) 187, 229
MvnI CGCG 1 cut(s) 125
MwoI GCNNNNNNNGC 2 cut(s) 363, 372
NaeI GCCGGC 1 cut(s) 115
NciI CCSGG 1 cut(s) 157
NcoI CCATGG 1 cut(s) 376
NdeII GATC 1 cut(s) 235
NgoMIV GCCGGC 1 cut(s) 113
NlaIII CATG 1 cut(s) 380
NlaIV GGNNCC 2 cut(s) 226, 301
PcsI WCGNNNNNNNCGW 1 cut(s) 282
PdiI GCCGGC 1 cut(s) 115
PkrI GCNGC 2 cut(s) 112, 284
PleI GAGTC 1 cut(s) 176
PpsI GAGTC 1 cut(s) 176
Psp124BI GAGCTC 1 cut(s) 368
Psp6I CCWGG 2 cut(s) 185, 227
PspGI CCWGG 2 cut(s) 185, 227
PspN4I GGNNCC 2 cut(s) 226, 301
PspPI GGNCC 3 cut(s) 159, 189, 300
RsaI GTAC 2 cut(s) 140, 254
RsaNI GTAC 2 cut(s) 139, 253
SacI GAGCTC 1 cut(s) 368
SaqAI TTAA 1 cut(s) 382
SatI GCNGC 2 cut(s) 111, 283
Sau3AI GATC 1 cut(s) 235
Sau96I GGNCC 3 cut(s) 159, 189, 300
SchI GAGTC 1 cut(s) 176
ScrFI CCNGG 3 cut(s) 157, 187, 229
SduI GDGCHC 1 cut(s) 368
SetI ASST 4 cut(s) 11, 80, 362, 368
SfaNI GCATC 1 cut(s) 279
SgrAI CRCCGGYG 1 cut(s) 113
SinI GGWCC 1 cut(s) 300
SsiI CCGC 5 cut(s) 111, 125, 168, 268, 282
SstI GAGCTC 1 cut(s) 368
StyD4I CCNGG 3 cut(s) 155, 185, 227
StyI CCWWGG 1 cut(s) 376
TaaI ACNGT 1 cut(s) 58
TaqI TCGA 1 cut(s) 135
TaqII GACCGA 1 cut(s) 317
TauI GCSGC 2 cut(s) 113, 285
Tru1I TTAA 1 cut(s) 382
Tru9I TTAA 1 cut(s) 382
TspDTI ATGAA 1 cut(s) 354
TspGWI ACGGA 1 cut(s) 237
VpaK11BI GGWCC 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.