Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006433.1

Orthogroup ID

OG0010711

Physical Location & Seq

Genomic Coordinates Forward (+)

31 .. 654

Gene Structure 624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

atgtctagctttgatatcctcagtgtggcagttttcattttcttttaccgccgaattcttgacccacttgtgagcaaaataagaaaatcagattccagaggacttactgagcttcagagaatgggaattggccttgttatagcaatcttggcaatgctttcagctggaattgtggagtgctacagactcaagtatgcaaagaaagaatgcacccattgcgatggctcaagcaccctaagcatcttctggcaaatacctcagtatgcattcataggtgcttctgaagttttcatgtatgtaggtcagttggagttcttcaatgcacaagcaccggatggactgaagagctttggaagtgccctgtgcatgacatccatatctctgggtaactacgttagcagcttgcttgtgagtatggtcatgaagatatcaactgaggatcacatgcccggatggattcctggaaacctcaacaaaggtcacctagatagattttacttcctcttagctgccttgacatcaatagatttgattgtctacattgcatgcgccaagtggtacaagtgtatcaagttggagggaagatttgaagaaaatgaagatcaagaaaacttcaaagtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005451 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006820 GO:0007275 GO:0007568 GO:0008150 GO:0008324 GO:0008509 GO:0009987 GO:0010035 GO:0010150 GO:0010167 GO:0015075 GO:0015077 GO:0015078 GO:0015079 GO:0015103 GO:0015112 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015386 GO:0015491 GO:0015672 GO:0015698 GO:0015706 GO:0016020 GO:0022804 GO:0022821 GO:0022857 GO:0022890 GO:0030001 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042592 GO:0044464 GO:0046873 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055085 GO:0065007 GO:0065008 GO:0071705 GO:0071804 GO:0071805 GO:0071944 GO:0090693 GO:0098655 GO:0098656 GO:0098660 GO:0098662 GO:0098771 GO:0099402 GO:0099516 GO:1901698 GO:1901700 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

207

Amino Acids

23.34

Weight (kDa)

6.81

Isoelectric Point (pI)

42.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTR2	PF00854	1 - 146	1.4e-27	POT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32450
fragaria_vesca	FvH4_5g21490
malus_domestica	MD06G1029400.v1.1 MD16G1277800.v1.1
prunus_persica	Prupe.5G042300_v2.0.a1
pyrus_communis	pycom06g02370 pycom16g24760 pycom16g24770
rosa_chinensis	RchiOBHm_Chr7g0208891
rosa_laevigata	RLG00000003186
rosa_multiflora	Rmu_sc0000532.1_g000007 Rmu_sc0006433.1_g000001 Rmu_sc0016359.1_g000003 Rmu_sc0030959.1_g000001
rosa_roxburghii	Rroxscaffold_3G00250070
rosa_rugosa	Rorug07G0107200
rosa_samantha	Rh7AG242200 Rh7BG237000 Rh7DG248100
rosa_wichuraiana	Rw7G020510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	537
AciI	CCGC	1 cut(s)	49
AclWI	GGATC	1 cut(s)	447
AcsI	RAATTY	1 cut(s)	54
AcuI	CTGAAG	3 cut(s)	98, 303, 362
AfaI	GTAC	1 cut(s)	560
AfiI	CCNNNNNNNGG	1 cut(s)	25
AgsI	TTSAA	3 cut(s)	319, 590, 616
AjnI	CCWGG	1 cut(s)	460
AluBI	AGCT	6 cut(s)	9, 112, 164, 348, 402, 509
AluI	AGCT	6 cut(s)	9, 112, 164, 348, 402, 509
AlwI	GGATC	1 cut(s)	447
AoxI	GGCC	1 cut(s)	130
ApeKI	GCWGC	2 cut(s)	399, 509
ApoI	RAATTY	1 cut(s)	54
AspLEI	GCGC	1 cut(s)	551
AsuC2I	CCSGG	1 cut(s)	450
AsuHPI	GGTGA	1 cut(s)	473
BaeGI	GKGCMC	1 cut(s)	361
BaeI	ACNNNNGTAYC	4 cut(s)	550, 550, 583, 583
BbvI	GCAGC	2 cut(s)	411, 496
BccI	CCATC	3 cut(s)	215, 329, 447
BciT130I	CCWGG	1 cut(s)	462
BcnI	CCSGG	1 cut(s)	450
BfaI	CTAG	2 cut(s)	6, 485
BfmI	CTRYAG	1 cut(s)	181
BisI	GCNGC	2 cut(s)	400, 510
BlsI	GCNGC	2 cut(s)	401, 511
Bme1390I	CCNGG	2 cut(s)	450, 462
BmrFI	CCNGG	2 cut(s)	450, 462
BmsI	GCATC	1 cut(s)	249
Bpu10I	CCTNAGC	1 cut(s)	236
BpuEI	CTTGAG	2 cut(s)	173, 211
BpuMI	CCSGG	1 cut(s)	450
BsaWI	WCCGGW	1 cut(s)	331
Bsc4I	CCNNNNNNNGG	1 cut(s)	25
Bse3DI	GCAATG	3 cut(s)	159, 214, 540
BseBI	CCWGG	1 cut(s)	462
BseGI	GGATG	3 cut(s)	340, 371, 458
BseLI	CCNNNNNNNGG	1 cut(s)	25
BseMI	GCAATG	3 cut(s)	159, 214, 540
BseMII	CTCAG	4 cut(s)	34, 99, 272, 426
BseSI	GKGCMC	1 cut(s)	361
BseXI	GCAGC	2 cut(s)	411, 496
BshFI	GGCC	1 cut(s)	132
BsiSI	CCGG	2 cut(s)	332, 450
BslI	CCNNNNNNNGG	1 cut(s)	25
BsmI	GAATGC	2 cut(s)	212, 266
BsnI	GGCC	1 cut(s)	132
Bsp1286I	GDGCHC	1 cut(s)	361
Bsp143I	GATC	2 cut(s)	439, 601
BspACI	CCGC	1 cut(s)	49
BspANI	GGCC	1 cut(s)	132
BspCNI	CTCAG	4 cut(s)	33, 100, 271, 427
BspHI	TCATGA	1 cut(s)	420
BspPI	GGATC	1 cut(s)	447
BspQI	GCTCTTC	1 cut(s)	338
BsrDI	GCAATG	3 cut(s)	159, 214, 540
BssMI	GATC	2 cut(s)	439, 601
Bst2UI	CCWGG	1 cut(s)	462
Bst6I	CTCTTC	1 cut(s)	338
BstAPI	GCANNNNNTGC	1 cut(s)	216
BstC8I	GCNNGC	2 cut(s)	404, 547
BstDEI	CTNAG	6 cut(s)	20, 108, 236, 258, 435, 505
BstEII	GGTNACC	1 cut(s)	479
BstF5I	GGATG	3 cut(s)	340, 371, 458
BstHHI	GCGC	1 cut(s)	551
BstKTI	GATC	2 cut(s)	442, 604
BstMBI	GATC	2 cut(s)	439, 601
BstMWI	GCNNNNNNNGC	3 cut(s)	149, 216, 237
BstNI	CCWGG	1 cut(s)	462
BstNSI	RCATGY	2 cut(s)	448, 549
BstPI	GGTNACC	1 cut(s)	479
BstSCI	CCNGG	2 cut(s)	448, 460
BstSFI	CTRYAG	1 cut(s)	181
BstSLI	GKGCMC	1 cut(s)	361
BstV1I	GCAGC	2 cut(s)	411, 496
BstXI	CCANNNNNNTGG	2 cut(s)	221, 382
BsuRI	GGCC	1 cut(s)	132
BtgZI	GCGATG	1 cut(s)	234
BtsCI	GGATG	3 cut(s)	340, 371, 458
BtsIMutI	CAGTG	1 cut(s)	28
Cac8I	GCNNGC	2 cut(s)	404, 547
CciI	TCATGA	1 cut(s)	420
CfoI	GCGC	1 cut(s)	551
Csp6I	GTAC	1 cut(s)	559
CviAII	CATG	5 cut(s)	292, 367, 421, 445, 546
CviJI	RGCY	8 cut(s)	9, 112, 132, 164, 225, 348, 402, 509
CviKI_1	RGCY	8 cut(s)	9, 112, 132, 164, 225, 348, 402, 509
CviQI	GTAC	1 cut(s)	559
DdeI	CTNAG	6 cut(s)	20, 108, 236, 258, 435, 505
DpnI	GATC	2 cut(s)	441, 603
DpnII	GATC	2 cut(s)	439, 601
Eam1104I	CTCTTC	1 cut(s)	338
EarI	CTCTTC	1 cut(s)	338
Eco32I	GATATC	2 cut(s)	16, 429
Eco57I	CTGAAG	3 cut(s)	98, 303, 362
Eco91I	GGTNACC	1 cut(s)	479
EcoO65I	GGTNACC	1 cut(s)	479
EcoRI	GAATTC	1 cut(s)	54
EcoRII	CCWGG	1 cut(s)	460
EcoRV	GATATC	2 cut(s)	16, 429
EcoT22I	ATGCAT	1 cut(s)	268
FaeI	CATG	5 cut(s)	295, 370, 424, 448, 549
FatI	CATG	5 cut(s)	291, 366, 420, 444, 545
FblI	GTMKAC	1 cut(s)	537
Fnu4HI	GCNGC	2 cut(s)	400, 510
FokI	GGATG	3 cut(s)	347, 358, 465
Fsp4HI	GCNGC	2 cut(s)	400, 510
FspBI	CTAG	2 cut(s)	6, 485
GlaI	GCGC	1 cut(s)	550
GluI	GCNGC	2 cut(s)	400, 510
HaeIII	GGCC	1 cut(s)	132
HapII	CCGG	2 cut(s)	332, 450
HhaI	GCGC	1 cut(s)	551
Hin1II	CATG	5 cut(s)	295, 370, 424, 448, 549
Hin6I	GCGC	1 cut(s)	549
HinP1I	GCGC	1 cut(s)	549
HinfI	GANTC	3 cut(s)	92, 186, 457
HpaII	CCGG	2 cut(s)	332, 450
HphI	GGTGA	1 cut(s)	473
Hpy166II	GTNNAC	1 cut(s)	538
Hpy188I	TCNGA	3 cut(s)	91, 117, 283
Hpy188III	TCNNGA	4 cut(s)	59, 96, 421, 605
Hpy8I	GTNNAC	1 cut(s)	538
HpyCH4IV	ACGT	1 cut(s)	393
HpyCH4V	TGCA	6 cut(s)	197, 210, 266, 323, 366, 545
HpyF10VI	GCNNNNNNNGC	3 cut(s)	149, 216, 237
HpyF3I	CTNAG	6 cut(s)	20, 108, 236, 258, 435, 505
HpySE526I	ACGT	1 cut(s)	393
Hsp92II	CATG	5 cut(s)	295, 370, 424, 448, 549
HspAI	GCGC	1 cut(s)	549
Kzo9I	GATC	2 cut(s)	439, 601
LguI	GCTCTTC	1 cut(s)	338
LpnPI	CCDG	9 cut(s)	109, 150, 232, 345, 368, 374, 447, 463, 474
Lsp1109I	GCAGC	2 cut(s)	411, 496
LweI	GCATC	1 cut(s)	249
MaeI	CTAG	2 cut(s)	6, 485
MaeII	ACGT	1 cut(s)	393
MaeIII	GTNAC	2 cut(s)	386, 479
MalI	GATC	2 cut(s)	441, 603
MboI	GATC	2 cut(s)	439, 601
MboII	GAAGA	7 cut(s)	235, 307, 355, 436, 594, 602, 611
MhlI	GDGCHC	1 cut(s)	361
MluCI	AATT	3 cut(s)	54, 126, 168
MlyI	GAGTC	1 cut(s)	180
MmeI	TCCRAC	2 cut(s)	288, 555
MnlI	CCTC	7 cut(s)	29, 92, 267, 430, 479, 512, 571
Mph1103I	ATGCAT	1 cut(s)	268
MslI	CAYNNNNRTG	1 cut(s)	219
MspA1I	CMGCKG	1 cut(s)	164
MspI	CCGG	2 cut(s)	332, 450
MspR9I	CCNGG	2 cut(s)	450, 462
Mva1269I	GAATGC	2 cut(s)	212, 266
MvaI	CCWGG	1 cut(s)	462
MwoI	GCNNNNNNNGC	3 cut(s)	149, 216, 237
NciI	CCSGG	1 cut(s)	450
NdeII	GATC	2 cut(s)	439, 601
NlaIII	CATG	5 cut(s)	295, 370, 424, 448, 549
NmuCI	GTSAC	1 cut(s)	479
NsiI	ATGCAT	1 cut(s)	268
NspI	RCATGY	2 cut(s)	448, 549
PaeI	GCATGC	1 cut(s)	549
PagI	TCATGA	1 cut(s)	420
PciSI	GCTCTTC	1 cut(s)	338
PctI	GAATGC	2 cut(s)	212, 266
PfeI	GAWTC	2 cut(s)	92, 457
PfoI	TCCNGGA	1 cut(s)	460
PkrI	GCNGC	2 cut(s)	401, 511
PleI	GAGTC	1 cut(s)	180
PpsI	GAGTC	1 cut(s)	180
Psp6I	CCWGG	1 cut(s)	460
PspEI	GGTNACC	1 cut(s)	479
PspGI	CCWGG	1 cut(s)	460
PvuII	CAGCTG	1 cut(s)	164
RsaI	GTAC	1 cut(s)	560
RsaNI	GTAC	1 cut(s)	559
RseI	CAYNNNNRTG	1 cut(s)	219
SapI	GCTCTTC	1 cut(s)	338
SatI	GCNGC	2 cut(s)	400, 510
Sau3AI	GATC	2 cut(s)	439, 601
SchI	GAGTC	1 cut(s)	180
ScrFI	CCNGG	2 cut(s)	450, 462
SduI	GDGCHC	1 cut(s)	361
SfaNI	GCATC	1 cut(s)	249
SfcI	CTRYAG	1 cut(s)	181
SmiMI	CAYNNNNRTG	1 cut(s)	219
SmlI	CTYRAG	2 cut(s)	188, 226
SmoI	CTYRAG	2 cut(s)	188, 226
SphI	GCATGC	1 cut(s)	549
Sse9I	AATT	3 cut(s)	54, 126, 168
SsiI	CCGC	1 cut(s)	49
SspMI	CTAG	2 cut(s)	6, 485
StyD4I	CCNGG	2 cut(s)	448, 460
TaiI	ACGT	1 cut(s)	396
TasI	AATT	3 cut(s)	54, 126, 168
TfiI	GAWTC	2 cut(s)	92, 457
TscAI	CASTG	1 cut(s)	28
TseFI	GTSAC	1 cut(s)	479
TseI	GCWGC	2 cut(s)	399, 509
Tsp45I	GTSAC	1 cut(s)	479
TspDTI	ATGAA	5 cut(s)	25, 259, 280, 437, 612
TspRI	CASTG	1 cut(s)	28
XapI	RAATTY	1 cut(s)	54
XceI	RCATGY	2 cut(s)	448, 549
XmiI	GTMKAC	1 cut(s)	537
XspI	CTAG	2 cut(s)	6, 485
Zsp2I	ATGCAT	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.