Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006452.1

Orthogroup ID

OG0025609

Physical Location & Seq

Genomic Coordinates Forward (+)

8608 .. 10556

Gene Structure 1949 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006452.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

atgcccatagaataccacaacctccatcacgccccaaaccgtcgctcgattcctccacctcaaccgaaccaggcggagccgaattggccagcgccctctttgttgtgggcctatcggttccgccgctggctcatcaagcatttcaaaccgatcgacgagacaggtcttggacctccttggattagacggaggctccaaacgagaatgatgatgatatggagacggtggagagagaagatgatgaggaatcaaccagtgaggatgaagtggtcaaggaggaagggcttctggatcctaaaccacaactccatcctccacctccctttccaacttctccttcaccccatccgaatccgaatgtccggctcaaagcccttcacatcaaccatctcctcgatctttcagctctgctgccctctccatcttgcaattgtccaccaaccctttgatcaaaatctggtacgtcatcggagccgactcaatctcctctatctccttcttcaccgacttaatcttcctcacttcctcactctcttcttaaacccctatcctctatttctcttcctttctcttgctacaggttttctgacggtagcggatgagttgatcttccctctggttgagcgccatgcaatttcgatggccttggccaactgggactggttggtttgtgctcagatcgggtctggaaagacgacggcgttttgcttcccaatttgcagcttaaggtcggtggcgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003729 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005777 GO:0005886 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016020 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042579 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0071944 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04622 ko05161 ko05203 map04622 map05161 map05203

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

246

Amino Acids

29.2

Weight (kDa)

11.36

Isoelectric Point (pI)

62.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025609)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0006452.1_g000004 Rmu_sc0008601.1_g000003 Rmu_sc0010342.1_g000004

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	74, 121, 124, 596
AclWI	GGATC	2 cut(s)	286, 299
AcoI	YGGCCR	2 cut(s)	86, 648
AfaI	GTAC	1 cut(s)	462
AflII	CTTAAG	1 cut(s)	724
AgsI	TTSAA	1 cut(s)	145
AjnI	CCWGG	1 cut(s)	69
AjuI	GAANNNNNNNTTGG	2 cut(s)	321, 353
AluBI	AGCT	2 cut(s)	406, 723
AluI	AGCT	2 cut(s)	406, 723
Alw21I	GWGCWC	1 cut(s)	676
Alw26I	GTCTC	2 cut(s)	152, 214
AlwI	GGATC	2 cut(s)	286, 299
AoxI	GGCC	4 cut(s)	86, 108, 642, 648
ApeKI	GCWGC	2 cut(s)	411, 720
Asp700I	GAANNNNTTC	1 cut(s)	284
AspLEI	GCGC	2 cut(s)	94, 627
AspS9I	GGNCC	2 cut(s)	108, 170
AsuHPI	GGTGA	2 cut(s)	332, 494
AvaII	GGWCC	1 cut(s)	170
BalI	TGGCCA	2 cut(s)	88, 650
BamHI	GGATCC	1 cut(s)	291
Bbv12I	GWGCWC	1 cut(s)	676
BbvI	GCAGC	2 cut(s)	398, 732
BccI	CCATC	6 cut(s)	33, 317, 353, 395, 429, 634
BceAI	ACGGC	1 cut(s)	714
BciT130I	CCWGG	1 cut(s)	71
BclI	TGATCA	1 cut(s)	448
BcoDI	GTCTC	2 cut(s)	152, 214
BfmI	CTRYAG	1 cut(s)	576
BfoI	RGCGCY	2 cut(s)	95, 628
BfrI	CTTAAG	1 cut(s)	724
BglI	GCCNNNNNGGC	1 cut(s)	85
BisI	GCNGC	3 cut(s)	124, 412, 721
BlsI	GCNGC	3 cut(s)	125, 413, 722
Bme1390I	CCNGG	1 cut(s)	71
Bme18I	GGWCC	1 cut(s)	170
BmgT120I	GGNCC	2 cut(s)	108, 170
BmiI	GGNNCC	5 cut(s)	78, 119, 194, 293, 473
BmrFI	CCNGG	1 cut(s)	71
BmrI	ACTGGG	1 cut(s)	664
BmuI	ACTGGG	1 cut(s)	664
BsaBI	GATNNNNATC	1 cut(s)	453
BsaJI	CCNNGG	2 cut(s)	176, 645
BsaXI	ACNNNNNCTCC	6 cut(s)	177, 207, 290, 320, 468, 498
Bse1I	ACTGG	3 cut(s)	254, 659, 665
Bse8I	GATNNNNATC	1 cut(s)	453
BseBI	CCWGG	1 cut(s)	71
BseDI	CCNNGG	2 cut(s)	176, 645
BseGI	GGATG	4 cut(s)	267, 309, 345, 604
BseJI	GATNNNNATC	1 cut(s)	453
BseMII	CTCAG	1 cut(s)	689
BseNI	ACTGG	3 cut(s)	254, 659, 665
BseRI	GAGGAG	2 cut(s)	382, 476
BseXI	GCAGC	2 cut(s)	398, 732
Bsh1285I	CGRYCG	1 cut(s)	153
BshFI	GGCC	4 cut(s)	88, 110, 644, 650
BsiEI	CGRYCG	1 cut(s)	153
BsiHKAI	GWGCWC	1 cut(s)	676
BsiSI	CCGG	1 cut(s)	363
BslFI	GGGAC	1 cut(s)	671
BsmAI	GTCTC	2 cut(s)	152, 214
BsmBI	CGTCTC	1 cut(s)	214
BsmFI	GGGAC	1 cut(s)	671
BsnI	GGCC	4 cut(s)	88, 110, 644, 650
Bsp1286I	GDGCHC	1 cut(s)	676
Bsp143I	GATC	6 cut(s)	150, 291, 396, 448, 606, 678
BspACI	CCGC	4 cut(s)	74, 121, 124, 596
BspANI	GGCC	4 cut(s)	88, 110, 644, 650
BspCNI	CTCAG	1 cut(s)	688
BspLI	GGNNCC	5 cut(s)	78, 119, 194, 293, 473
BspPI	GGATC	2 cut(s)	286, 299
BspTI	CTTAAG	1 cut(s)	724
BsrI	ACTGG	3 cut(s)	254, 659, 665
BssECI	CCNNGG	2 cut(s)	176, 645
BssMI	GATC	6 cut(s)	150, 291, 396, 448, 606, 678
BssT1I	CCWWGG	2 cut(s)	176, 645
Bst2UI	CCWGG	1 cut(s)	71
Bst4CI	ACNGT	3 cut(s)	41, 225, 592
Bst6I	CTCTTC	2 cut(s)	539, 566
BstAFI	CTTAAG	1 cut(s)	724
BstC8I	GCNNGC	2 cut(s)	90, 128
BstDEI	CTNAG	1 cut(s)	675
BstF5I	GGATG	4 cut(s)	267, 309, 345, 604
BstH2I	RGCGCY	2 cut(s)	95, 628
BstHHI	GCGC	2 cut(s)	94, 627
BstKTI	GATC	6 cut(s)	153, 294, 399, 451, 609, 681
BstMAI	GTCTC	2 cut(s)	152, 214
BstMBI	GATC	6 cut(s)	150, 291, 396, 448, 606, 678
BstMCI	CGRYCG	1 cut(s)	153
BstMWI	GCNNNNNNNGC	2 cut(s)	85, 136
BstNI	CCWGG	1 cut(s)	71
BstSCI	CCNGG	1 cut(s)	69
BstSFI	CTRYAG	1 cut(s)	576
BstV1I	GCAGC	2 cut(s)	398, 732
BstX2I	RGATCY	1 cut(s)	291
BstYI	RGATCY	1 cut(s)	291
BsuRI	GGCC	4 cut(s)	88, 110, 644, 650
BtsCI	GGATG	4 cut(s)	267, 309, 345, 604
BtsIMutI	CAGTG	1 cut(s)	261
Cac8I	GCNNGC	2 cut(s)	90, 128
CfoI	GCGC	2 cut(s)	94, 627
Cfr13I	GGNCC	2 cut(s)	108, 170
Csp6I	GTAC	1 cut(s)	461
CviAII	CATG	1 cut(s)	629
CviQI	GTAC	1 cut(s)	461
DdeI	CTNAG	1 cut(s)	675
DpnI	GATC	6 cut(s)	152, 293, 398, 450, 608, 680
DpnII	GATC	6 cut(s)	150, 291, 396, 448, 606, 678
EaeI	YGGCCR	2 cut(s)	86, 648
Eam1104I	CTCTTC	2 cut(s)	539, 566
EarI	CTCTTC	2 cut(s)	539, 566
EciI	GGCGGA	2 cut(s)	89, 110
Eco130I	CCWWGG	2 cut(s)	176, 645
Eco47I	GGWCC	1 cut(s)	170
EcoRII	CCWGG	1 cut(s)	69
EcoT14I	CCWWGG	2 cut(s)	176, 645
ErhI	CCWWGG	2 cut(s)	176, 645
Esp3I	CGTCTC	1 cut(s)	214
FaeI	CATG	1 cut(s)	632
FaiI	YATR	3 cut(s)	8, 217, 630
FaqI	GGGAC	1 cut(s)	671
FatI	CATG	1 cut(s)	628
FbaI	TGATCA	1 cut(s)	448
Fnu4HI	GCNGC	3 cut(s)	124, 412, 721
FokI	GGATG	4 cut(s)	274, 296, 332, 611
Fsp4HI	GCNGC	3 cut(s)	124, 412, 721
GlaI	GCGC	2 cut(s)	93, 626
GluI	GCNGC	3 cut(s)	124, 412, 721
HaeII	RGCGCY	2 cut(s)	95, 628
HaeIII	GGCC	4 cut(s)	88, 110, 644, 650
HapII	CCGG	1 cut(s)	363
HhaI	GCGC	2 cut(s)	94, 627
Hin1II	CATG	1 cut(s)	632
Hin6I	GCGC	2 cut(s)	92, 625
HinP1I	GCGC	2 cut(s)	92, 625
HinfI	GANTC	4 cut(s)	49, 247, 351, 477
HpaII	CCGG	1 cut(s)	363
HphI	GGTGA	2 cut(s)	332, 494
Hpy166II	GTNNAC	1 cut(s)	436
Hpy188I	TCNGA	5 cut(s)	350, 356, 471, 588, 678
Hpy188III	TCNNGA	2 cut(s)	289, 687
Hpy8I	GTNNAC	1 cut(s)	436
Hpy99I	CGWCG	3 cut(s)	45, 158, 700
HpyAV	CCTTC	4 cut(s)	274, 347, 385, 506
HpyCH4III	ACNGT	3 cut(s)	41, 225, 592
HpyCH4IV	ACGT	1 cut(s)	463
HpyCH4V	TGCA	3 cut(s)	428, 632, 720
HpyF10VI	GCNNNNNNNGC	2 cut(s)	85, 136
HpyF3I	CTNAG	1 cut(s)	675
HpySE526I	ACGT	1 cut(s)	463
Hsp92II	CATG	1 cut(s)	632
HspAI	GCGC	2 cut(s)	92, 625
Ksp22I	TGATCA	1 cut(s)	448
Kzo9I	GATC	6 cut(s)	150, 291, 396, 448, 606, 678
LmnI	GCTCC	3 cut(s)	76, 198, 471
Lsp1109I	GCAGC	2 cut(s)	398, 732
MaeII	ACGT	1 cut(s)	463
MalI	GATC	6 cut(s)	152, 293, 398, 450, 608, 680
MboI	GATC	6 cut(s)	150, 291, 396, 448, 606, 678
MboII	GAAGA	6 cut(s)	247, 491, 506, 526, 553, 601
MfeI	CAATTG	1 cut(s)	429
MflI	RGATCY	1 cut(s)	291
MhlI	GDGCHC	1 cut(s)	676
MlsI	TGGCCA	2 cut(s)	88, 650
MluCI	AATT	4 cut(s)	82, 429, 633, 714
MluNI	TGGCCA	2 cut(s)	88, 650
MlyI	GAGTC	1 cut(s)	471
MmeI	TCCRAC	1 cut(s)	352
Mox20I	TGGCCA	2 cut(s)	88, 650
MroXI	GAANNNNTTC	1 cut(s)	284
MscI	TGGCCA	2 cut(s)	88, 650
MseI	TTAA	3 cut(s)	510, 539, 725
Msp20I	TGGCCA	2 cut(s)	88, 650
MspA1I	CMGCKG	1 cut(s)	126
MspCI	CTTAAG	1 cut(s)	724
MspI	CCGG	1 cut(s)	363
MspR9I	CCNGG	1 cut(s)	71
MunI	CAATTG	1 cut(s)	429
MvaI	CCWGG	1 cut(s)	71
MwoI	GCNNNNNNNGC	2 cut(s)	85, 136
NdeII	GATC	6 cut(s)	150, 291, 396, 448, 606, 678
NlaIII	CATG	1 cut(s)	632
NlaIV	GGNNCC	5 cut(s)	78, 119, 194, 293, 473
PdmI	GAANNNNTTC	1 cut(s)	284
PfeI	GAWTC	3 cut(s)	49, 247, 351
PkrI	GCNGC	3 cut(s)	125, 413, 722
Ple19I	CGATCG	1 cut(s)	153
PleI	GAGTC	1 cut(s)	471
PpsI	GAGTC	1 cut(s)	471
Psp6I	CCWGG	1 cut(s)	69
PspGI	CCWGG	1 cut(s)	69
PspN4I	GGNNCC	5 cut(s)	78, 119, 194, 293, 473
PspPI	GGNCC	2 cut(s)	108, 170
PsuI	RGATCY	1 cut(s)	291
PvuI	CGATCG	1 cut(s)	153
RsaI	GTAC	1 cut(s)	462
RsaNI	GTAC	1 cut(s)	461
SaqAI	TTAA	3 cut(s)	510, 539, 725
SatI	GCNGC	3 cut(s)	124, 412, 721
Sau3AI	GATC	6 cut(s)	150, 291, 396, 448, 606, 678
Sau96I	GGNCC	2 cut(s)	108, 170
SchI	GAGTC	1 cut(s)	471
ScrFI	CCNGG	1 cut(s)	71
SduI	GDGCHC	1 cut(s)	676
SfcI	CTRYAG	1 cut(s)	576
SinI	GGWCC	1 cut(s)	170
SmlI	CTYRAG	1 cut(s)	724
SmoI	CTYRAG	1 cut(s)	724
Sse9I	AATT	4 cut(s)	82, 429, 633, 714
SsiI	CCGC	4 cut(s)	74, 121, 124, 596
StyD4I	CCNGG	1 cut(s)	69
StyI	CCWWGG	2 cut(s)	176, 645
TaaI	ACNGT	3 cut(s)	41, 225, 592
TaiI	ACGT	1 cut(s)	466
TaqI	TCGA	4 cut(s)	47, 153, 395, 638
TasI	AATT	4 cut(s)	82, 429, 633, 714
TauI	GCSGC	1 cut(s)	126
TfiI	GAWTC	3 cut(s)	49, 247, 351
Tru1I	TTAA	3 cut(s)	510, 539, 725
Tru9I	TTAA	3 cut(s)	510, 539, 725
TscAI	CASTG	1 cut(s)	261
TseI	GCWGC	2 cut(s)	411, 720
TspDTI	ATGAA	1 cut(s)	278
TspGWI	ACGGA	1 cut(s)	202
TspRI	CASTG	1 cut(s)	261
Vha464I	CTTAAG	1 cut(s)	724
VpaK11BI	GGWCC	1 cut(s)	170
XmnI	GAANNNNTTC	1 cut(s)	284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.