Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008601.1

Orthogroup ID

OG0025609

Physical Location & Seq

Genomic Coordinates Forward (+)

19424 .. 19807

Gene Structure 384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008601.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

atgtccggctcaaaacccttcacatcaaccatctcctcgatctttcagctccactgcactctccatcttgcaattgtccaccaatcctttgatcaaaatcttgcacgtcatcggagtcgactcaatctcctctgtctccttcttcaccgactcaatcttcctcacttcctcactctcttcttaaacccctatcctccatttctcttcctttctcttgctacaggttttctgactgcaacagatgagttgatctcccttctggttgagtgccatgcaattccgatagccacggccaactgggactggttggtttgtgctcagattgggtctggaaagatggcggcgttttgcttcccaatttgtagcttgaggtcggtgcagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko04622 ko05161 ko05203 map04622 map05161 map05203

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

127

Amino Acids

14.21

Weight (kDa)

8.31

Isoelectric Point (pI)

49.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025609)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0006452.1_g000004 Rmu_sc0008601.1_g000003 Rmu_sc0010342.1_g000004

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	118
AciI	CCGC	1 cut(s)	341
AcoI	YGGCCR	1 cut(s)	291
AjiI	CACGTC	1 cut(s)	107
AluBI	AGCT	2 cut(s)	49, 366
AluI	AGCT	2 cut(s)	49, 366
Alw21I	GWGCWC	1 cut(s)	319
Alw26I	GTCTC	1 cut(s)	140
AoxI	GGCC	1 cut(s)	291
AsuHPI	GGTGA	1 cut(s)	137
Bbv12I	GWGCWC	1 cut(s)	319
BccI	CCATC	3 cut(s)	38, 72, 331
BceAI	ACGGC	1 cut(s)	306
BclI	TGATCA	1 cut(s)	91
BcoDI	GTCTC	1 cut(s)	140
BfmI	CTRYAG	1 cut(s)	219
BisI	GCNGC	1 cut(s)	342
BlsI	GCNGC	1 cut(s)	343
BmgBI	CACGTC	1 cut(s)	107
BmrI	ACTGGG	1 cut(s)	307
BmuI	ACTGGG	1 cut(s)	307
BplI	GAGNNNNNCTC	2 cut(s)	236, 268
BsaBI	GATNNNNATC	1 cut(s)	96
BsaJI	CCNNGG	1 cut(s)	288
BsaXI	ACNNNNNCTCC	2 cut(s)	111, 141
Bse1I	ACTGG	2 cut(s)	302, 308
Bse8I	GATNNNNATC	1 cut(s)	96
BseDI	CCNNGG	1 cut(s)	288
BseJI	GATNNNNATC	1 cut(s)	96
BseMII	CTCAG	1 cut(s)	332
BseNI	ACTGG	2 cut(s)	302, 308
BseRI	GAGGAG	2 cut(s)	25, 119
BsgI	GTGCAG	1 cut(s)	40
BshFI	GGCC	1 cut(s)	293
BsiHKAI	GWGCWC	1 cut(s)	319
BsiSI	CCGG	1 cut(s)	6
BslFI	GGGAC	1 cut(s)	314
BsmAI	GTCTC	1 cut(s)	140
BsmFI	GGGAC	1 cut(s)	314
BsnI	GGCC	1 cut(s)	293
Bsp1286I	GDGCHC	1 cut(s)	319
Bsp143I	GATC	3 cut(s)	39, 91, 249
BspACI	CCGC	1 cut(s)	341
BspANI	GGCC	1 cut(s)	293
BspCNI	CTCAG	1 cut(s)	331
BsrI	ACTGG	2 cut(s)	302, 308
BssECI	CCNNGG	1 cut(s)	288
BssMI	GATC	3 cut(s)	39, 91, 249
Bst6I	CTCTTC	2 cut(s)	182, 209
BstDEI	CTNAG	1 cut(s)	318
BstDSI	CCRYGG	1 cut(s)	288
BstKTI	GATC	3 cut(s)	42, 94, 252
BstMAI	GTCTC	1 cut(s)	140
BstMBI	GATC	3 cut(s)	39, 91, 249
BstSFI	CTRYAG	1 cut(s)	219
BsuRI	GGCC	1 cut(s)	293
BtgI	CCRYGG	1 cut(s)	288
BtrI	CACGTC	1 cut(s)	107
BtsI	GCAGTG	1 cut(s)	52
BtsIMutI	CAGTG	1 cut(s)	52
CviAII	CATG	1 cut(s)	272
CviJI	RGCY	5 cut(s)	9, 49, 287, 293, 366
CviKI_1	RGCY	5 cut(s)	9, 49, 287, 293, 366
DdeI	CTNAG	1 cut(s)	318
DpnI	GATC	3 cut(s)	41, 93, 251
DpnII	GATC	3 cut(s)	39, 91, 249
EaeI	YGGCCR	1 cut(s)	291
Eam1104I	CTCTTC	2 cut(s)	182, 209
EarI	CTCTTC	2 cut(s)	182, 209
FaeI	CATG	1 cut(s)	275
FaiI	YATR	1 cut(s)	273
FaqI	GGGAC	1 cut(s)	314
FatI	CATG	1 cut(s)	271
FbaI	TGATCA	1 cut(s)	91
FblI	GTMKAC	1 cut(s)	118
Fnu4HI	GCNGC	1 cut(s)	342
Fsp4HI	GCNGC	1 cut(s)	342
GluI	GCNGC	1 cut(s)	342
HaeIII	GGCC	1 cut(s)	293
HapII	CCGG	1 cut(s)	6
Hin1II	CATG	1 cut(s)	275
HincII	GTYRAC	1 cut(s)	119
HindII	GTYRAC	1 cut(s)	119
HinfI	GANTC	3 cut(s)	115, 120, 150
HpaII	CCGG	1 cut(s)	6
HphI	GGTGA	1 cut(s)	137
Hpy166II	GTNNAC	2 cut(s)	79, 119
Hpy188I	TCNGA	4 cut(s)	114, 231, 282, 321
Hpy188III	TCNNGA	1 cut(s)	330
Hpy8I	GTNNAC	2 cut(s)	79, 119
HpyAV	CCTTC	3 cut(s)	28, 149, 266
HpyCH4IV	ACGT	1 cut(s)	106
HpyCH4V	TGCA	6 cut(s)	57, 71, 104, 236, 275, 379
HpyF3I	CTNAG	1 cut(s)	318
HpySE526I	ACGT	1 cut(s)	106
Hsp92II	CATG	1 cut(s)	275
Ksp22I	TGATCA	1 cut(s)	91
Kzo9I	GATC	3 cut(s)	39, 91, 249
LmnI	GCTCC	1 cut(s)	54
LpnPI	CCDG	6 cut(s)	19, 207, 245, 283, 289, 315
MaeII	ACGT	1 cut(s)	106
MalI	GATC	3 cut(s)	41, 93, 251
MboI	GATC	3 cut(s)	39, 91, 249
MboII	GAAGA	4 cut(s)	134, 149, 169, 196
MfeI	CAATTG	1 cut(s)	72
MhlI	GDGCHC	1 cut(s)	319
MluCI	AATT	3 cut(s)	72, 276, 357
MlyI	GAGTC	3 cut(s)	114, 124, 144
MnlI	CCTC	6 cut(s)	46, 140, 171, 179, 204, 363
MseI	TTAA	1 cut(s)	182
MspI	CCGG	1 cut(s)	6
MunI	CAATTG	1 cut(s)	72
NdeII	GATC	3 cut(s)	39, 91, 249
NlaIII	CATG	1 cut(s)	275
PkrI	GCNGC	1 cut(s)	343
PleI	GAGTC	3 cut(s)	114, 123, 144
PpsI	GAGTC	3 cut(s)	114, 123, 144
SalI	GTCGAC	1 cut(s)	117
SaqAI	TTAA	1 cut(s)	182
SatI	GCNGC	1 cut(s)	342
Sau3AI	GATC	3 cut(s)	39, 91, 249
SchI	GAGTC	3 cut(s)	114, 124, 144
SduI	GDGCHC	1 cut(s)	319
SetI	ASST	5 cut(s)	51, 109, 226, 368, 374
SfcI	CTRYAG	1 cut(s)	219
SmlI	CTYRAG	1 cut(s)	367
SmoI	CTYRAG	1 cut(s)	367
Sse9I	AATT	3 cut(s)	72, 276, 357
SsiI	CCGC	1 cut(s)	341
TaiI	ACGT	1 cut(s)	109
TaqI	TCGA	2 cut(s)	38, 118
TasI	AATT	3 cut(s)	72, 276, 357
TauI	GCSGC	1 cut(s)	344
Tru1I	TTAA	1 cut(s)	182
Tru9I	TTAA	1 cut(s)	182
TscAI	CASTG	1 cut(s)	59
TspRI	CASTG	1 cut(s)	59
XmiI	GTMKAC	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.