Rmu_sc0010342.1_g000004

DEAD-box ATP-dependent RNA helicase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010342.1
OG0025609
Physical Location & Seq
Forward (+)
11113 .. 13066
1954 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010342.1_g000004.1.cds

Sequence Viewer

Length: 462 bp
atgcccatagaataccacaacctccaccacaccccaaaccgtcgctcgattcctccacctcaattgaaccaggcggagccgaattggcctgcgccctctttgtcgtgggcctatcggttccgccgctggctcatcgagcatttcaaaccgatcgacgagacagaaggagagaagctaaagatttgcgagacggagacggaggctccaaacgagaatgatgatgatatggagacggtggagagagaagatgatgaggaatcaaccagtgaggatgaagtgatcaaggaggaggggcttctaggttttctgacggtagcagatgagttgatcttccctctggtcgagcgccatgcaatttcgatagccatggccaactgggactggttggtttgtgctcagatcgggtctggaaagacggcagcgttttgcttcccaatttgcagcttaaggtcggtgtcgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04622 ko05161 ko05203 map04622 map05161 map05203
Pfam Domains
Protein Families
DEAD Helicase_C

Protein Analysis

153

Amino Acids

17.58

Weight (kDa)

4.51

Isoelectric Point (pI)

57.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025609)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0006452.1_g000004 Rmu_sc0008601.1_g000003 Rmu_sc0010342.1_g000004

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 74, 121, 124
AcoI YGGCCR 1 cut(s) 369
AflII CTTAAG 1 cut(s) 445
AgsI TTSAA 2 cut(s) 67, 145
AjnI CCWGG 1 cut(s) 69
AluBI AGCT 2 cut(s) 175, 444
AluI AGCT 2 cut(s) 175, 444
Alw21I GWGCWC 1 cut(s) 397
Alw26I GTCTC 4 cut(s) 152, 182, 188, 224
AoxI GGCC 3 cut(s) 86, 108, 369
ApeKI GCWGC 2 cut(s) 419, 441
AspLEI GCGC 2 cut(s) 94, 348
AspS9I GGNCC 1 cut(s) 108
BalI TGGCCA 1 cut(s) 371
Bbv12I GWGCWC 1 cut(s) 397
BbvI GCAGC 2 cut(s) 431, 453
BceAI ACGGC 1 cut(s) 432
BcgI CGANNNNNNTGC 2 cut(s) 332, 366
BciT130I CCWGG 1 cut(s) 71
BclI TGATCA 1 cut(s) 279
BcoDI GTCTC 4 cut(s) 152, 182, 188, 224
BfaI CTAG 1 cut(s) 299
BfoI RGCGCY 1 cut(s) 349
BfrI CTTAAG 1 cut(s) 445
BglI GCCNNNNNGGC 1 cut(s) 85
BisI GCNGC 3 cut(s) 124, 420, 442
BlsI GCNGC 3 cut(s) 125, 421, 443
Bme1390I CCNGG 1 cut(s) 71
BmgT120I GGNCC 1 cut(s) 108
BmiI GGNNCC 3 cut(s) 78, 119, 204
BmrFI CCNGG 1 cut(s) 71
BmrI ACTGGG 1 cut(s) 385
BmuI ACTGGG 1 cut(s) 385
BsaJI CCNNGG 1 cut(s) 366
BsaXI ACNNNNNCTCC 2 cut(s) 187, 217
Bse1I ACTGG 3 cut(s) 264, 380, 386
BseBI CCWGG 1 cut(s) 71
BseDI CCNNGG 1 cut(s) 366
BseGI GGATG 1 cut(s) 277
BseMII CTCAG 1 cut(s) 410
BseNI ACTGG 3 cut(s) 264, 380, 386
BseRI GAGGAG 1 cut(s) 302
BseXI GCAGC 2 cut(s) 431, 453
Bsh1285I CGRYCG 1 cut(s) 153
BshFI GGCC 3 cut(s) 88, 110, 371
BsiEI CGRYCG 1 cut(s) 153
BsiHKAI GWGCWC 1 cut(s) 397
BslFI GGGAC 1 cut(s) 392
BsmAI GTCTC 4 cut(s) 152, 182, 188, 224
BsmBI CGTCTC 3 cut(s) 182, 188, 224
BsmFI GGGAC 1 cut(s) 392
BsnI GGCC 3 cut(s) 88, 110, 371
Bsp1286I GDGCHC 1 cut(s) 397
Bsp143I GATC 4 cut(s) 150, 279, 327, 399
Bsp19I CCATGG 1 cut(s) 366
BspACI CCGC 3 cut(s) 74, 121, 124
BspANI GGCC 3 cut(s) 88, 110, 371
BspCNI CTCAG 1 cut(s) 409
BspLI GGNNCC 3 cut(s) 78, 119, 204
BspTI CTTAAG 1 cut(s) 445
BsrI ACTGG 3 cut(s) 264, 380, 386
BssECI CCNNGG 1 cut(s) 366
BssMI GATC 4 cut(s) 150, 279, 327, 399
BssT1I CCWWGG 1 cut(s) 366
Bst2UI CCWGG 1 cut(s) 71
Bst4CI ACNGT 3 cut(s) 41, 235, 313
BstAFI CTTAAG 1 cut(s) 445
BstC8I GCNNGC 2 cut(s) 90, 128
BstDEI CTNAG 1 cut(s) 396
BstDSI CCRYGG 1 cut(s) 366
BstF5I GGATG 1 cut(s) 277
BstH2I RGCGCY 1 cut(s) 349
BstHHI GCGC 2 cut(s) 94, 348
BstKTI GATC 4 cut(s) 153, 282, 330, 402
BstMAI GTCTC 4 cut(s) 152, 182, 188, 224
BstMBI GATC 4 cut(s) 150, 279, 327, 399
BstMCI CGRYCG 1 cut(s) 153
BstMWI GCNNNNNNNGC 2 cut(s) 85, 136
BstNI CCWGG 1 cut(s) 71
BstSCI CCNGG 1 cut(s) 69
BstV1I GCAGC 2 cut(s) 431, 453
BsuRI GGCC 3 cut(s) 88, 110, 371
BtgI CCRYGG 1 cut(s) 366
BtsCI GGATG 1 cut(s) 277
BtsIMutI CAGTG 1 cut(s) 271
Cac8I GCNNGC 2 cut(s) 90, 128
CfoI GCGC 2 cut(s) 94, 348
Cfr13I GGNCC 1 cut(s) 108
CspCI CAANNNNNGTGG 2 cut(s) 45, 80
CviAII CATG 2 cut(s) 350, 367
DdeI CTNAG 1 cut(s) 396
DpnI GATC 4 cut(s) 152, 281, 329, 401
DpnII GATC 4 cut(s) 150, 279, 327, 399
EaeI YGGCCR 1 cut(s) 369
EciI GGCGGA 2 cut(s) 89, 110
Eco130I CCWWGG 1 cut(s) 366
EcoRII CCWGG 1 cut(s) 69
EcoT14I CCWWGG 1 cut(s) 366
ErhI CCWWGG 1 cut(s) 366
Esp3I CGTCTC 3 cut(s) 182, 188, 224
FaeI CATG 2 cut(s) 353, 370
FaiI YATR 4 cut(s) 8, 227, 351, 368
FaqI GGGAC 1 cut(s) 392
FatI CATG 2 cut(s) 349, 366
FbaI TGATCA 1 cut(s) 279
Fnu4HI GCNGC 3 cut(s) 124, 420, 442
FokI GGATG 1 cut(s) 284
Fsp4HI GCNGC 3 cut(s) 124, 420, 442
FspBI CTAG 1 cut(s) 299
GlaI GCGC 2 cut(s) 93, 347
GluI GCNGC 3 cut(s) 124, 420, 442
HaeII RGCGCY 1 cut(s) 349
HaeIII GGCC 3 cut(s) 88, 110, 371
HhaI GCGC 2 cut(s) 94, 348
Hin1II CATG 2 cut(s) 353, 370
Hin6I GCGC 2 cut(s) 92, 346
HinP1I GCGC 2 cut(s) 92, 346
HinfI GANTC 2 cut(s) 49, 257
Hpy188I TCNGA 2 cut(s) 309, 399
Hpy188III TCNNGA 1 cut(s) 408
Hpy99I CGWCG 2 cut(s) 45, 158
HpyAV CCTTC 1 cut(s) 158
HpyCH4III ACNGT 3 cut(s) 41, 235, 313
HpyCH4V TGCA 2 cut(s) 353, 441
HpyF10VI GCNNNNNNNGC 2 cut(s) 85, 136
HpyF3I CTNAG 1 cut(s) 396
Hsp92II CATG 2 cut(s) 353, 370
HspAI GCGC 2 cut(s) 92, 346
Ksp22I TGATCA 1 cut(s) 279
Kzo9I GATC 4 cut(s) 150, 279, 327, 399
LmnI GCTCC 2 cut(s) 76, 208
LpnPI CCDG 9 cut(s) 56, 83, 102, 112, 277, 323, 361, 367, 393
Lsp1109I GCAGC 2 cut(s) 431, 453
MaeI CTAG 1 cut(s) 299
MalI GATC 4 cut(s) 152, 281, 329, 401
MboI GATC 4 cut(s) 150, 279, 327, 399
MboII GAAGA 2 cut(s) 257, 322
MfeI CAATTG 1 cut(s) 62
MhlI GDGCHC 1 cut(s) 397
MlsI TGGCCA 1 cut(s) 371
MluCI AATT 4 cut(s) 62, 82, 354, 435
MluNI TGGCCA 1 cut(s) 371
Mox20I TGGCCA 1 cut(s) 371
MscI TGGCCA 1 cut(s) 371
MseI TTAA 1 cut(s) 446
Msp20I TGGCCA 1 cut(s) 371
MspA1I CMGCKG 1 cut(s) 126
MspCI CTTAAG 1 cut(s) 445
MspR9I CCNGG 1 cut(s) 71
MunI CAATTG 1 cut(s) 62
MvaI CCWGG 1 cut(s) 71
MwoI GCNNNNNNNGC 2 cut(s) 85, 136
NcoI CCATGG 1 cut(s) 366
NdeII GATC 4 cut(s) 150, 279, 327, 399
NlaIII CATG 2 cut(s) 353, 370
NlaIV GGNNCC 3 cut(s) 78, 119, 204
PfeI GAWTC 2 cut(s) 49, 257
PkrI GCNGC 3 cut(s) 125, 421, 443
Ple19I CGATCG 1 cut(s) 153
Psp6I CCWGG 1 cut(s) 69
PspGI CCWGG 1 cut(s) 69
PspN4I GGNNCC 3 cut(s) 78, 119, 204
PspPI GGNCC 1 cut(s) 108
PvuI CGATCG 1 cut(s) 153
SaqAI TTAA 1 cut(s) 446
SatI GCNGC 3 cut(s) 124, 420, 442
Sau3AI GATC 4 cut(s) 150, 279, 327, 399
Sau96I GGNCC 1 cut(s) 108
ScrFI CCNGG 1 cut(s) 71
SduI GDGCHC 1 cut(s) 397
SetI ASST 6 cut(s) 24, 61, 177, 304, 446, 452
SmlI CTYRAG 1 cut(s) 445
SmoI CTYRAG 1 cut(s) 445
Sse9I AATT 4 cut(s) 62, 82, 354, 435
SsiI CCGC 3 cut(s) 74, 121, 124
SspMI CTAG 1 cut(s) 299
StyD4I CCNGG 1 cut(s) 69
StyI CCWWGG 1 cut(s) 366
TaaI ACNGT 3 cut(s) 41, 235, 313
TaqI TCGA 5 cut(s) 47, 135, 153, 342, 359
TasI AATT 4 cut(s) 62, 82, 354, 435
TauI GCSGC 1 cut(s) 126
TfiI GAWTC 2 cut(s) 49, 257
Tru1I TTAA 1 cut(s) 446
Tru9I TTAA 1 cut(s) 446
TscAI CASTG 1 cut(s) 271
TseI GCWGC 2 cut(s) 419, 441
TspDTI ATGAA 1 cut(s) 288
TspGWI ACGGA 2 cut(s) 206, 212
TspRI CASTG 1 cut(s) 271
Vha464I CTTAAG 1 cut(s) 445
XspI CTAG 1 cut(s) 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.