Rmu_sc0006543.1_g000005

Plant protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006543.1
OG0020573
Physical Location & Seq
Forward (+)
29841 .. 30281
441 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 441 bp
atggaagggctacagaatctgacgtctaagtggaaaaagctgtctcccctatcctctgagtgtcgtatctacagagttcccaagaggctacgtgacgtgaaggagaaggcttacacacctcaggtagtctcacttggtccgcttcaccatggtggagaaggtctccaagccatggaagaacataaattgcggtatgtgaaggacttctttgaacggatccccgaggtaagagtagaggattgtttcacatatatgatggatcgggaagaaaagatccgtgcatgttatgcagtagcaattgaatttaatgcacataaactagtggaaataattctggttgatgccattttcacctttgagttgctgctcaggagctcttttgatccctgcaagataagaatgaccgtatatttgggaagccaaggatgtccagggtcgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

146

Amino Acids

16.92

Weight (kDa)

8.26

Isoelectric Point (pI)

52.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 23 - 126 1.3e-32 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020573)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0298351 RchiOBHm_Chr6g0298371
rosa_multiflora Rmu_sc0006543.1_g000005 Rmu_sc0006543.1_g000006 Rmu_sc0010802.1_g000001
rosa_samantha Rh6AG391300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 26
AccB7I CCANNNNNTGG 1 cut(s) 172
AciI CCGC 2 cut(s) 140, 190
AclWI GGATC 5 cut(s) 211, 224, 267, 268, 377
AcsI RAATTY 1 cut(s) 302
AcyI GRCGYC 1 cut(s) 23
AfiI CCNNNNNNNGG 1 cut(s) 172
AgsI TTSAA 2 cut(s) 212, 302
AhlI ACTAGT 1 cut(s) 319
AjiI CACGTC 1 cut(s) 97
AjnI CCWGG 1 cut(s) 430
AleI CACNNNNGTG 1 cut(s) 150
AluBI AGCT 2 cut(s) 40, 375
AluI AGCT 2 cut(s) 40, 375
Alw21I GWGCWC 1 cut(s) 377
Alw26I GTCTC 3 cut(s) 48, 133, 167
AlwI GGATC 5 cut(s) 211, 224, 267, 268, 377
AlwNI CAGNNNCTG 1 cut(s) 19
Ama87I CYCGRG 1 cut(s) 221
ApeKI GCWGC 1 cut(s) 364
ApoI RAATTY 1 cut(s) 302
ArsI GACNNNNNNTTYG 2 cut(s) 394, 426
Asp700I GAANNNNTTC 2 cut(s) 203, 330
AspS9I GGNCC 1 cut(s) 137
AsuHPI GGTGA 2 cut(s) 137, 343
AvaI CYCGRG 1 cut(s) 221
AvaII GGWCC 1 cut(s) 137
AxyI CCTNAGG 1 cut(s) 120
BamHI GGATCC 1 cut(s) 216
BanII GRGCYC 1 cut(s) 377
Bbv12I GWGCWC 1 cut(s) 377
BbvI GCAGC 1 cut(s) 351
BccI CCATC 1 cut(s) 250
BciT130I CCWGG 1 cut(s) 432
BcoDI GTCTC 3 cut(s) 48, 133, 167
BcuI ACTAGT 1 cut(s) 319
BfaI CTAG 1 cut(s) 320
BfmI CTRYAG 2 cut(s) 11, 70
BisI GCNGC 1 cut(s) 365
BlsI GCNGC 1 cut(s) 366
Bme1390I CCNGG 1 cut(s) 432
Bme18I GGWCC 1 cut(s) 137
BmeT110I CYCGRG 1 cut(s) 221
BmgBI CACGTC 1 cut(s) 97
BmgT120I GGNCC 1 cut(s) 137
BmiI GGNNCC 1 cut(s) 218
BmrFI CCNGG 1 cut(s) 432
BmsI GCATC 1 cut(s) 331
BplI GAGNNNNNCTC 2 cut(s) 147, 179
Bpu10I CCTNAGC 1 cut(s) 368
BsaAI YACGTR 1 cut(s) 92
BsaHI GRCGYC 1 cut(s) 23
BsaI GGTCTC 1 cut(s) 167
BsaJI CCNNGG 5 cut(s) 148, 171, 222, 421, 431
Bsc4I CCNNNNNNNGG 1 cut(s) 172
Bse21I CCTNAGG 1 cut(s) 120
BseBI CCWGG 1 cut(s) 432
BseDI CCNNGG 5 cut(s) 148, 171, 222, 421, 431
BseGI GGATG 1 cut(s) 431
BseLI CCNNNNNNNGG 1 cut(s) 172
BseMII CTCAG 3 cut(s) 48, 134, 382
BseXI GCAGC 1 cut(s) 351
BsiHKAI GWGCWC 1 cut(s) 377
BsiHKCI CYCGRG 1 cut(s) 221
BslI CCNNNNNNNGG 1 cut(s) 172
BsmAI GTCTC 3 cut(s) 48, 133, 167
Bso31I GGTCTC 1 cut(s) 167
BsoBI CYCGRG 1 cut(s) 221
Bsp1286I GDGCHC 1 cut(s) 377
Bsp143I GATC 4 cut(s) 216, 259, 273, 382
Bsp19I CCATGG 2 cut(s) 148, 171
BspACI CCGC 2 cut(s) 140, 190
BspCNI CTCAG 3 cut(s) 49, 133, 381
BspLI GGNNCC 1 cut(s) 218
BspPI GGATC 5 cut(s) 211, 224, 267, 268, 377
BspTNI GGTCTC 1 cut(s) 167
BssECI CCNNGG 5 cut(s) 148, 171, 222, 421, 431
BssMI GATC 4 cut(s) 216, 259, 273, 382
BssNI GRCGYC 1 cut(s) 23
BssT1I CCWWGG 3 cut(s) 148, 171, 421
Bst2UI CCWGG 1 cut(s) 432
Bst4CI ACNGT 1 cut(s) 406
BstACI GRCGYC 1 cut(s) 23
BstAPI GCANNNNNTGC 1 cut(s) 287
BstBAI YACGTR 1 cut(s) 92
BstDEI CTNAG 4 cut(s) 27, 57, 120, 368
BstDSI CCRYGG 2 cut(s) 148, 171
BstF5I GGATG 1 cut(s) 431
BstKTI GATC 4 cut(s) 219, 262, 276, 385
BstMAI GTCTC 3 cut(s) 48, 133, 167
BstMBI GATC 4 cut(s) 216, 259, 273, 382
BstMWI GCNNNNNNNGC 1 cut(s) 287
BstNI CCWGG 1 cut(s) 432
BstNSI RCATGY 1 cut(s) 285
BstSCI CCNGG 1 cut(s) 430
BstSFI CTRYAG 2 cut(s) 11, 70
BstV1I GCAGC 1 cut(s) 351
BstX2I RGATCY 2 cut(s) 216, 273
BstYI RGATCY 2 cut(s) 216, 273
Bsu36I CCTNAGG 1 cut(s) 120
BtgI CCRYGG 2 cut(s) 148, 171
BtrI CACGTC 1 cut(s) 97
BtsCI GGATG 1 cut(s) 431
CaiI CAGNNNCTG 1 cut(s) 19
Cfr13I GGNCC 1 cut(s) 137
CviAII CATG 3 cut(s) 149, 172, 282
CviJI RGCY 7 cut(s) 10, 40, 88, 110, 170, 375, 420
CviKI_1 RGCY 7 cut(s) 10, 40, 88, 110, 170, 375, 420
DdeI CTNAG 4 cut(s) 27, 57, 120, 368
DpnI GATC 4 cut(s) 218, 261, 275, 384
DpnII GATC 4 cut(s) 216, 259, 273, 382
Ecl136II GAGCTC 1 cut(s) 375
Eco130I CCWWGG 3 cut(s) 148, 171, 421
Eco24I GRGCYC 1 cut(s) 377
Eco31I GGTCTC 1 cut(s) 167
Eco47I GGWCC 1 cut(s) 137
Eco53kI GAGCTC 1 cut(s) 375
Eco81I CCTNAGG 1 cut(s) 120
Eco88I CYCGRG 1 cut(s) 221
EcoICRI GAGCTC 1 cut(s) 375
EcoRII CCWGG 1 cut(s) 430
EcoT14I CCWWGG 3 cut(s) 148, 171, 421
EcoT38I GRGCYC 1 cut(s) 377
ErhI CCWWGG 3 cut(s) 148, 171, 421
FaeI CATG 3 cut(s) 152, 175, 285
FalI AAGNNNNNCTT 2 cut(s) 191, 223
FatI CATG 3 cut(s) 148, 171, 281
Fnu4HI GCNGC 1 cut(s) 365
FriOI GRGCYC 1 cut(s) 377
Fsp4HI GCNGC 1 cut(s) 365
FspBI CTAG 1 cut(s) 320
GluI GCNGC 1 cut(s) 365
Hin1I GRCGYC 1 cut(s) 23
Hin1II CATG 3 cut(s) 152, 175, 285
HinfI GANTC 1 cut(s) 16
HphI GGTGA 2 cut(s) 137, 343
Hpy188I TCNGA 2 cut(s) 21, 58
Hpy188III TCNNGA 3 cut(s) 263, 370, 438
HpyAV CCTTC 4 cut(s) 94, 100, 152, 193
HpyCH4III ACNGT 1 cut(s) 406
HpyCH4IV ACGT 3 cut(s) 23, 91, 96
HpyCH4V TGCA 4 cut(s) 281, 290, 311, 390
HpyF10VI GCNNNNNNNGC 1 cut(s) 287
HpyF3I CTNAG 4 cut(s) 27, 57, 120, 368
HpySE526I ACGT 3 cut(s) 23, 91, 96
Hsp92I GRCGYC 1 cut(s) 23
Hsp92II CATG 3 cut(s) 152, 175, 285
Kzo9I GATC 4 cut(s) 216, 259, 273, 382
LmnI GCTCC 1 cut(s) 372
LpnPI CCDG 5 cut(s) 107, 320, 355, 400, 417
Lsp1109I GCAGC 1 cut(s) 351
LweI GCATC 1 cut(s) 331
MaeI CTAG 1 cut(s) 320
MaeII ACGT 3 cut(s) 23, 91, 96
MaeIII GTNAC 1 cut(s) 92
MalI GATC 4 cut(s) 218, 261, 275, 384
MboI GATC 4 cut(s) 216, 259, 273, 382
MboII GAAGA 2 cut(s) 188, 278
MfeI CAATTG 1 cut(s) 297
MflI RGATCY 2 cut(s) 216, 273
MhlI GDGCHC 1 cut(s) 377
MluCI AATT 4 cut(s) 185, 297, 302, 330
MnlI CCTC 5 cut(s) 64, 78, 129, 217, 229
MroXI GAANNNNTTC 2 cut(s) 203, 330
MseI TTAA 1 cut(s) 306
MslI CAYNNNNRTG 2 cut(s) 150, 251
MspR9I CCNGG 1 cut(s) 432
MunI CAATTG 1 cut(s) 297
MvaI CCWGG 1 cut(s) 432
MwoI GCNNNNNNNGC 1 cut(s) 287
NcoI CCATGG 2 cut(s) 148, 171
NdeII GATC 4 cut(s) 216, 259, 273, 382
NlaIII CATG 3 cut(s) 152, 175, 285
NlaIV GGNNCC 1 cut(s) 218
NmuCI GTSAC 1 cut(s) 92
NspI RCATGY 1 cut(s) 285
OliI CACNNNNGTG 1 cut(s) 150
PdmI GAANNNNTTC 2 cut(s) 203, 330
PfeI GAWTC 1 cut(s) 16
PflMI CCANNNNNTGG 1 cut(s) 172
PkrI GCNGC 1 cut(s) 366
Ppu21I YACGTR 1 cut(s) 92
Psp124BI GAGCTC 1 cut(s) 377
Psp6I CCWGG 1 cut(s) 430
PspGI CCWGG 1 cut(s) 430
PspN4I GGNNCC 1 cut(s) 218
PspPI GGNCC 1 cut(s) 137
PstNI CAGNNNCTG 1 cut(s) 19
PsuI RGATCY 2 cut(s) 216, 273
RseI CAYNNNNRTG 2 cut(s) 150, 251
SacI GAGCTC 1 cut(s) 377
SaqAI TTAA 1 cut(s) 306
SatI GCNGC 1 cut(s) 365
Sau3AI GATC 4 cut(s) 216, 259, 273, 382
Sau96I GGNCC 1 cut(s) 137
ScrFI CCNGG 1 cut(s) 432
SduI GDGCHC 1 cut(s) 377
SfaNI GCATC 1 cut(s) 331
SfcI CTRYAG 2 cut(s) 11, 70
SinI GGWCC 1 cut(s) 137
SmiMI CAYNNNNRTG 2 cut(s) 150, 251
SpeI ACTAGT 1 cut(s) 319
Sse9I AATT 4 cut(s) 185, 297, 302, 330
SsiI CCGC 2 cut(s) 140, 190
SspMI CTAG 1 cut(s) 320
SstI GAGCTC 1 cut(s) 377
StyD4I CCNGG 1 cut(s) 430
StyI CCWWGG 3 cut(s) 148, 171, 421
TaaI ACNGT 1 cut(s) 406
TaiI ACGT 3 cut(s) 26, 94, 99
TasI AATT 4 cut(s) 185, 297, 302, 330
TfiI GAWTC 1 cut(s) 16
Tru1I TTAA 1 cut(s) 306
Tru9I TTAA 1 cut(s) 306
TseFI GTSAC 1 cut(s) 92
TseI GCWGC 1 cut(s) 364
Tsp45I GTSAC 1 cut(s) 92
TspGWI ACGGA 2 cut(s) 229, 266
Van91I CCANNNNNTGG 1 cut(s) 172
VpaK11BI GGWCC 1 cut(s) 137
XapI RAATTY 1 cut(s) 302
XceI RCATGY 1 cut(s) 285
XmnI GAANNNNTTC 2 cut(s) 203, 330
XspI CTAG 1 cut(s) 320
ZraI GACGTC 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.