Rmu_sc0006596.1_g000001

Protein trichome birefringence-like 19

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006596.1
OG0021360
Physical Location & Seq
Forward (+)
1 .. 883
883 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 578 bp
agcttgttgcaatcgactatgtgatcgtctcagcagggcaatggttcttccggccgctagtgtattatgaaaatggtggaagtattgggtgtcactggtgcaacctggacaacatgacagagattccagagacctatgggtacagaaaggccttcaggactgtgtttaggacgctccagagcctcgaaaactataagggtgtgacatttttgaggactttctctccggcacactttgaaaatggggcttggaacgctggagggagttgtgggaggacgaagccttttagcaaagaggaaatgaagttagaaggatttattttggacatgtatatgactcaagtagaagagctcaaagcagcacaaaaccaagctaagcagaaaggtctggattttagattgatggaaacaactgaagcaatgctgctgagacctgatggacacccaaatttctatggagcctcaccgcataggaatacgacttatgccgactgtgttcactggtgcttgcctggccctattgatacatggaatgagattttgctgcatatgttgaagacagggcagagatcaacttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PC-Esterase PMR5N

Protein Analysis

191

Amino Acids

21.89

Weight (kDa)

6.65

Isoelectric Point (pI)

38.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PC-Esterase PF13839 3 - 183 3.3e-55 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0021360)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0163731
rosa_multiflora Rmu_sc0004918.1_g000010 Rmu_sc0006596.1_g000001 Rmu_sc0026453.1_g000002
rosa_samantha Rh2BG582900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 55, 466
AcoI YGGCCR 1 cut(s) 52
AcsI RAATTY 1 cut(s) 447
AcuI CTGAAG 2 cut(s) 138, 434
AfaI GTAC 1 cut(s) 142
AflIII ACRYGT 1 cut(s) 326
AgsI TTSAA 2 cut(s) 238, 555
AjnI CCWGG 2 cut(s) 104, 510
AluBI AGCT 3 cut(s) 3, 351, 373
AluI AGCT 3 cut(s) 3, 351, 373
Alw21I GWGCWC 1 cut(s) 353
Alw26I GTCTC 3 cut(s) 33, 124, 423
AoxI GGCC 3 cut(s) 52, 149, 513
ApeKI GCWGC 3 cut(s) 358, 423, 543
ApoI RAATTY 1 cut(s) 447
AspS9I GGNCC 1 cut(s) 514
AsuHPI GGTGA 1 cut(s) 455
BanII GRGCYC 1 cut(s) 353
BbsI GAAGAC 1 cut(s) 562
Bbv12I GWGCWC 1 cut(s) 353
BbvI GCAGC 3 cut(s) 370, 410, 530
BccI CCATC 2 cut(s) 396, 430
BciT130I CCWGG 2 cut(s) 106, 512
BcoDI GTCTC 3 cut(s) 33, 124, 423
BfaI CTAG 1 cut(s) 58
BisI GCNGC 4 cut(s) 55, 359, 424, 544
BlpI GCTNAGC 1 cut(s) 374
BlsI GCNGC 4 cut(s) 56, 360, 425, 545
Bme1390I CCNGG 2 cut(s) 106, 512
BmgT120I GGNCC 1 cut(s) 514
BmiI GGNNCC 1 cut(s) 459
BmrFI CCNGG 2 cut(s) 106, 512
BpiI GAAGAC 1 cut(s) 562
BpmI CTGGAG 2 cut(s) 160, 278
Bpu1102I GCTNAGC 1 cut(s) 374
BpuEI CTTGAG 1 cut(s) 323
BsaI GGTCTC 2 cut(s) 124, 423
BsaXI ACNNNNNCTCC 2 cut(s) 207, 237
Bse1I ACTGG 2 cut(s) 100, 505
Bse3DI GCAATG 2 cut(s) 46, 425
BseBI CCWGG 2 cut(s) 106, 512
BseMI GCAATG 2 cut(s) 46, 425
BseMII CTCAG 2 cut(s) 44, 418
BseNI ACTGG 2 cut(s) 100, 505
BseX3I CGGCCG 1 cut(s) 52
BseXI GCAGC 3 cut(s) 370, 410, 530
Bsh1285I CGRYCG 1 cut(s) 55
BshFI GGCC 3 cut(s) 54, 151, 515
BsiEI CGRYCG 1 cut(s) 55
BsiHKAI GWGCWC 1 cut(s) 353
BsiSI CCGG 2 cut(s) 51, 226
BsmAI GTCTC 3 cut(s) 33, 124, 423
BsmBI CGTCTC 1 cut(s) 33
BsnI GGCC 3 cut(s) 54, 151, 515
Bso31I GGTCTC 2 cut(s) 124, 423
Bsp1286I GDGCHC 1 cut(s) 353
Bsp143I GATC 2 cut(s) 23, 568
Bsp1720I GCTNAGC 1 cut(s) 374
BspACI CCGC 2 cut(s) 55, 466
BspANI GGCC 3 cut(s) 54, 151, 515
BspCNI CTCAG 2 cut(s) 43, 419
BspLI GGNNCC 1 cut(s) 459
BspQI GCTCTTC 1 cut(s) 341
BspTNI GGTCTC 2 cut(s) 124, 423
BsrDI GCAATG 2 cut(s) 46, 425
BsrI ACTGG 2 cut(s) 100, 505
BssMI GATC 2 cut(s) 23, 568
Bst2UI CCWGG 2 cut(s) 106, 512
Bst4CI ACNGT 2 cut(s) 162, 493
Bst6I CTCTTC 1 cut(s) 341
BstC8I GCNNGC 1 cut(s) 508
BstDEI CTNAG 3 cut(s) 30, 374, 427
BstKTI GATC 2 cut(s) 26, 571
BstMAI GTCTC 3 cut(s) 33, 124, 423
BstMBI GATC 2 cut(s) 23, 568
BstMCI CGRYCG 1 cut(s) 55
BstMWI GCNNNNNNNGC 2 cut(s) 253, 512
BstNI CCWGG 2 cut(s) 106, 512
BstNSI RCATGY 1 cut(s) 330
BstSCI CCNGG 2 cut(s) 104, 510
BstV1I GCAGC 3 cut(s) 370, 410, 530
BstV2I GAAGAC 1 cut(s) 562
BstZI CGGCCG 1 cut(s) 52
BsuRI GGCC 3 cut(s) 54, 151, 515
BtsIMutI CAGTG 2 cut(s) 93, 498
Cac8I GCNNGC 1 cut(s) 508
Cfr13I GGNCC 1 cut(s) 514
CseI GACGC 1 cut(s) 180
Csp6I GTAC 1 cut(s) 141
CviAII CATG 3 cut(s) 114, 327, 527
CviQI GTAC 1 cut(s) 141
DdeI CTNAG 3 cut(s) 30, 374, 427
DpnI GATC 2 cut(s) 25, 570
DpnII GATC 2 cut(s) 23, 568
EaeI YGGCCR 1 cut(s) 52
EagI CGGCCG 1 cut(s) 52
Eam1104I CTCTTC 1 cut(s) 341
EarI CTCTTC 1 cut(s) 341
Ecl136II GAGCTC 1 cut(s) 351
EclXI CGGCCG 1 cut(s) 52
Eco147I AGGCCT 1 cut(s) 151
Eco24I GRGCYC 1 cut(s) 353
Eco31I GGTCTC 2 cut(s) 124, 423
Eco52I CGGCCG 1 cut(s) 52
Eco53kI GAGCTC 1 cut(s) 351
Eco57I CTGAAG 2 cut(s) 138, 434
EcoICRI GAGCTC 1 cut(s) 351
EcoRII CCWGG 2 cut(s) 104, 510
EcoT38I GRGCYC 1 cut(s) 353
Esp3I CGTCTC 1 cut(s) 33
FaeI CATG 3 cut(s) 117, 330, 530
FatI CATG 3 cut(s) 113, 326, 526
FauNDI CATATG 1 cut(s) 548
Fnu4HI GCNGC 4 cut(s) 55, 359, 424, 544
FriOI GRGCYC 1 cut(s) 353
Fsp4HI GCNGC 4 cut(s) 55, 359, 424, 544
FspBI CTAG 1 cut(s) 58
GluI GCNGC 4 cut(s) 55, 359, 424, 544
GsuI CTGGAG 2 cut(s) 160, 278
HaeIII GGCC 3 cut(s) 54, 151, 515
HapII CCGG 2 cut(s) 51, 226
HgaI GACGC 1 cut(s) 180
Hin1II CATG 3 cut(s) 117, 330, 530
HinfI GANTC 2 cut(s) 123, 336
HpaII CCGG 2 cut(s) 51, 226
HphI GGTGA 1 cut(s) 455
Hpy166II GTNNAC 1 cut(s) 498
Hpy188III TCNNGA 4 cut(s) 127, 156, 177, 388
Hpy8I GTNNAC 1 cut(s) 498
HpyAV CCTTC 2 cut(s) 162, 304
HpyCH4III ACNGT 2 cut(s) 162, 493
HpyCH4V TGCA 3 cut(s) 10, 101, 546
HpyF10VI GCNNNNNNNGC 2 cut(s) 253, 512
HpyF3I CTNAG 3 cut(s) 30, 374, 427
Hsp92II CATG 3 cut(s) 117, 330, 530
Kzo9I GATC 2 cut(s) 23, 568
LguI GCTCTTC 1 cut(s) 341
LmnI GCTCC 2 cut(s) 179, 457
Lsp1109I GCAGC 3 cut(s) 370, 410, 530
MaeI CTAG 1 cut(s) 58
MaeIII GTNAC 2 cut(s) 91, 201
MalI GATC 2 cut(s) 25, 570
MboI GATC 2 cut(s) 23, 568
MboII GAAGA 3 cut(s) 39, 358, 567
MhlI GDGCHC 1 cut(s) 353
MluCI AATT 1 cut(s) 447
MlyI GAGTC 1 cut(s) 330
MnlI CCTC 6 cut(s) 193, 206, 253, 266, 288, 471
MslI CAYNNNNRTG 1 cut(s) 331
MspI CCGG 2 cut(s) 51, 226
MspR9I CCNGG 2 cut(s) 106, 512
MvaI CCWGG 2 cut(s) 106, 512
MwoI GCNNNNNNNGC 2 cut(s) 253, 512
NdeI CATATG 1 cut(s) 548
NdeII GATC 2 cut(s) 23, 568
NlaIII CATG 3 cut(s) 117, 330, 530
NlaIV GGNNCC 1 cut(s) 459
NmuCI GTSAC 2 cut(s) 91, 201
NspI RCATGY 1 cut(s) 330
PceI AGGCCT 1 cut(s) 151
PciI ACATGT 1 cut(s) 326
PciSI GCTCTTC 1 cut(s) 341
PfeI GAWTC 1 cut(s) 123
PkrI GCNGC 4 cut(s) 56, 360, 425, 545
PleI GAGTC 1 cut(s) 330
PpsI GAGTC 1 cut(s) 330
PscI ACATGT 1 cut(s) 326
Psp124BI GAGCTC 1 cut(s) 353
Psp6I CCWGG 2 cut(s) 104, 510
PspGI CCWGG 2 cut(s) 104, 510
PspN4I GGNNCC 1 cut(s) 459
PspPI GGNCC 1 cut(s) 514
RsaI GTAC 1 cut(s) 142
RsaNI GTAC 1 cut(s) 141
RseI CAYNNNNRTG 1 cut(s) 331
SacI GAGCTC 1 cut(s) 353
SapI GCTCTTC 1 cut(s) 341
SatI GCNGC 4 cut(s) 55, 359, 424, 544
Sau3AI GATC 2 cut(s) 23, 568
Sau96I GGNCC 1 cut(s) 514
SchI GAGTC 1 cut(s) 330
ScrFI CCNGG 2 cut(s) 106, 512
SduI GDGCHC 1 cut(s) 353
SetI ASST 6 cut(s) 107, 136, 353, 375, 387, 435
SmiMI CAYNNNNRTG 1 cut(s) 331
SmlI CTYRAG 1 cut(s) 338
SmoI CTYRAG 1 cut(s) 338
Sse9I AATT 1 cut(s) 447
SseBI AGGCCT 1 cut(s) 151
SsiI CCGC 2 cut(s) 55, 466
SspMI CTAG 1 cut(s) 58
SstI GAGCTC 1 cut(s) 353
StuI AGGCCT 1 cut(s) 151
StyD4I CCNGG 2 cut(s) 104, 510
TaaI ACNGT 2 cut(s) 162, 493
TaqI TCGA 2 cut(s) 14, 185
TasI AATT 1 cut(s) 447
TauI GCSGC 1 cut(s) 57
TfiI GAWTC 1 cut(s) 123
TscAI CASTG 2 cut(s) 100, 505
TseFI GTSAC 2 cut(s) 91, 201
TseI GCWGC 3 cut(s) 358, 423, 543
Tsp45I GTSAC 2 cut(s) 91, 201
TspDTI ATGAA 2 cut(s) 83, 316
TspRI CASTG 2 cut(s) 100, 505
XapI RAATTY 1 cut(s) 447
XceI RCATGY 1 cut(s) 330
XspI CTAG 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.