Rmu_sc0006626.1_g000008

Belongs to the glutamine synthetase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006626.1
Physical Location & Seq
Forward (+)
40015 .. 40378
364 bp
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UTR
Exon/CDS
Intron
Rmu_sc0006626.1_g000008.1.cds

Sequence Viewer

Length: 273 bp
atggaggtggcggagctagtcgacgcccacaacctcttctccaccgactcttccttccccttcaacaatgccttcttccaagccaatgccgatgccttatcttacgcaccccattccctctccttcaagagaagtttgaaggacattgcggagctgtacagctgtgaggattccttggatgtggttgaggagcatcagagagtcgtcgtattggaggcaattagctctaaatgctttgaggctgtaagagtgatgagggataaacttgtatga

Protein Analysis

90

Amino Acids

10.14

Weight (kDa)

4.71

Isoelectric Point (pI)

38.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0025611)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0006626.1_g000008 Rmu_sc0009454.1_g000002
rosa_samantha Rh1AG037800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 21
AciI CCGC 2 cut(s) 11, 149
AcyI GRCGYC 1 cut(s) 24
AfaI GTAC 1 cut(s) 158
AgsI TTSAA 3 cut(s) 64, 127, 139
AluBI AGCT 4 cut(s) 16, 154, 162, 225
AluI AGCT 4 cut(s) 16, 154, 162, 225
BfaI CTAG 1 cut(s) 17
BmsI GCATC 2 cut(s) 82, 202
BsaHI GRCGYC 1 cut(s) 24
BsaJI CCNNGG 1 cut(s) 174
BsaXI ACNNNNNCTCC 2 cut(s) 23, 53
Bse3DI GCAATG 1 cut(s) 144
BseDI CCNNGG 1 cut(s) 174
BseGI GGATG 1 cut(s) 184
BseMI GCAATG 1 cut(s) 144
BseRI GAGGAG 1 cut(s) 203
Bsp1407I TGTACA 1 cut(s) 156
BspACI CCGC 2 cut(s) 11, 149
BsrDI GCAATG 1 cut(s) 144
BsrGI TGTACA 1 cut(s) 156
BssECI CCNNGG 1 cut(s) 174
BssNI GRCGYC 1 cut(s) 24
BssT1I CCWWGG 1 cut(s) 174
Bst6I CTCTTC 2 cut(s) 41, 55
BstACI GRCGYC 1 cut(s) 24
BstAUI TGTACA 1 cut(s) 156
BstF5I GGATG 1 cut(s) 184
BstMWI GCNNNNNNNGC 1 cut(s) 231
BtsCI GGATG 1 cut(s) 184
CseI GACGC 1 cut(s) 32
Csp6I GTAC 1 cut(s) 157
CviJI RGCY 6 cut(s) 16, 83, 154, 162, 225, 242
CviKI_1 RGCY 6 cut(s) 16, 83, 154, 162, 225, 242
CviQI GTAC 1 cut(s) 157
Eam1104I CTCTTC 2 cut(s) 41, 55
EarI CTCTTC 2 cut(s) 41, 55
EciI GGCGGA 1 cut(s) 26
Eco130I CCWWGG 1 cut(s) 174
EcoT14I CCWWGG 1 cut(s) 174
ErhI CCWWGG 1 cut(s) 174
FaiI YATR 1 cut(s) 271
FblI GTMKAC 1 cut(s) 21
FokI GGATG 1 cut(s) 191
FspBI CTAG 1 cut(s) 17
HgaI GACGC 1 cut(s) 32
Hin1I GRCGYC 1 cut(s) 24
HincII GTYRAC 1 cut(s) 22
HindII GTYRAC 1 cut(s) 22
HinfI GANTC 3 cut(s) 47, 170, 201
Hpy166II GTNNAC 1 cut(s) 22
Hpy188I TCNGA 1 cut(s) 198
Hpy188III TCNNGA 1 cut(s) 127
Hpy8I GTNNAC 1 cut(s) 22
Hpy99I CGWCG 2 cut(s) 26, 209
HpyAV CCTTC 5 cut(s) 64, 70, 82, 133, 133
HpyF10VI GCNNNNNNNGC 1 cut(s) 231
Hsp92I GRCGYC 1 cut(s) 24
LmnI GCTCC 3 cut(s) 13, 151, 190
LweI GCATC 2 cut(s) 82, 202
MaeI CTAG 1 cut(s) 17
MboII GAAGA 3 cut(s) 28, 42, 67
MluCI AATT 1 cut(s) 219
MlyI GAGTC 2 cut(s) 41, 210
MnlI CCTC 7 cut(s) 44, 128, 160, 181, 208, 232, 249
MspA1I CMGCKG 1 cut(s) 162
MwoI GCNNNNNNNGC 1 cut(s) 231
PfeI GAWTC 1 cut(s) 170
PleI GAGTC 2 cut(s) 41, 209
PpsI GAGTC 2 cut(s) 41, 209
PvuII CAGCTG 1 cut(s) 162
RsaI GTAC 1 cut(s) 158
RsaNI GTAC 1 cut(s) 157
SalI GTCGAC 1 cut(s) 20
SchI GAGTC 2 cut(s) 41, 210
SetI ASST 6 cut(s) 9, 18, 36, 156, 164, 227
SfaNI GCATC 2 cut(s) 82, 202
SgeI CNNG 4 cut(s) 29, 92, 139, 187
Sse9I AATT 1 cut(s) 219
SsiI CCGC 2 cut(s) 11, 149
SspMI CTAG 1 cut(s) 17
StyI CCWWGG 1 cut(s) 174
TaqI TCGA 1 cut(s) 21
TasI AATT 1 cut(s) 219
TatI WGTACW 1 cut(s) 156
TfiI GAWTC 1 cut(s) 170
XmiI GTMKAC 1 cut(s) 21
XspI CTAG 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.