Rh1AG037800

Belongs to the glutamine synthetase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Reverse (-)
6619228 .. 6619603
376 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG037800.1

Sequence Viewer

Length: 285 bp
ATGGATTTCACGGCGCTGCGGACAGCTGTGGAGGTGGCGGAGCTGGTCGACGCCACCGACTCTTCCTTCCCCTTCATCAGTGCCTTCTTCGAAGCCAATGCTGATGCCTTATCTTATGCACCCTATTCCCTCTCCTTCAAGAGAAGTTTAAAGGAGGTTGCGGAGCTGTACGGCTGTGATAATTCCTTGGATGTGGTTGAGGAGCATCAGAGAGTCGTCGTATTGGAGGCGATTAGCTCTAGATGCTTTGAGGCTGCAAGAGTGATGAGGGATAAACTTGTATGA

Protein Analysis

94

Amino Acids

10.47

Weight (kDa)

4.52

Isoelectric Point (pI)

32.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0025611)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0006626.1_g000008 Rmu_sc0009454.1_g000002
rosa_samantha Rh1AG037800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 48
AciI CCGC 3 cut(s) 19, 38, 161
AcyI GRCGYC 1 cut(s) 51
AfaI GTAC 1 cut(s) 170
AgsI TTSAA 1 cut(s) 139
AluBI AGCT 4 cut(s) 26, 43, 166, 237
AluI AGCT 4 cut(s) 26, 43, 166, 237
ApeKI GCWGC 2 cut(s) 16, 254
AspLEI GCGC 1 cut(s) 16
AsuII TTCGAA 1 cut(s) 90
BbvI GCAGC 2 cut(s) 3, 241
BceAI ACGGC 2 cut(s) 27, 187
BcgI CGANNNNNNTGC 2 cut(s) 80, 114
BfaI CTAG 1 cut(s) 240
BfoI RGCGCY 1 cut(s) 17
BisI GCNGC 2 cut(s) 17, 255
BlsI GCNGC 2 cut(s) 18, 256
BmsI GCATC 3 cut(s) 94, 214, 233
Bpu14I TTCGAA 1 cut(s) 90
BsaHI GRCGYC 1 cut(s) 51
BsaJI CCNNGG 1 cut(s) 186
BseDI CCNNGG 1 cut(s) 186
BseGI GGATG 1 cut(s) 196
BseRI GAGGAG 1 cut(s) 215
BseXI GCAGC 2 cut(s) 3, 241
Bsp119I TTCGAA 1 cut(s) 90
BspACI CCGC 3 cut(s) 19, 38, 161
BspT104I TTCGAA 1 cut(s) 90
BssECI CCNNGG 1 cut(s) 186
BssNI GRCGYC 1 cut(s) 51
BssT1I CCWWGG 1 cut(s) 186
Bst6I CTCTTC 1 cut(s) 67
BstACI GRCGYC 1 cut(s) 51
BstBI TTCGAA 1 cut(s) 90
BstF5I GGATG 1 cut(s) 196
BstH2I RGCGCY 1 cut(s) 17
BstHHI GCGC 1 cut(s) 16
BstMWI GCNNNNNNNGC 1 cut(s) 243
BstV1I GCAGC 2 cut(s) 3, 241
BtsCI GGATG 1 cut(s) 196
BtsIMutI CAGTG 1 cut(s) 85
CfoI GCGC 1 cut(s) 16
CseI GACGC 1 cut(s) 59
Csp6I GTAC 1 cut(s) 169
CviJI RGCY 7 cut(s) 26, 43, 95, 166, 174, 237, 254
CviKI_1 RGCY 7 cut(s) 26, 43, 95, 166, 174, 237, 254
CviQI GTAC 1 cut(s) 169
DraI TTTAAA 1 cut(s) 150
Eam1104I CTCTTC 1 cut(s) 67
EarI CTCTTC 1 cut(s) 67
EciI GGCGGA 1 cut(s) 53
Eco130I CCWWGG 1 cut(s) 186
EcoT14I CCWWGG 1 cut(s) 186
ErhI CCWWGG 1 cut(s) 186
FaiI YATR 2 cut(s) 117, 283
FblI GTMKAC 1 cut(s) 48
Fnu4HI GCNGC 2 cut(s) 17, 255
FokI GGATG 1 cut(s) 203
Fsp4HI GCNGC 2 cut(s) 17, 255
FspBI CTAG 1 cut(s) 240
GlaI GCGC 1 cut(s) 15
GluI GCNGC 2 cut(s) 17, 255
HaeII RGCGCY 1 cut(s) 17
HgaI GACGC 1 cut(s) 59
HhaI GCGC 1 cut(s) 16
Hin1I GRCGYC 1 cut(s) 51
Hin6I GCGC 1 cut(s) 14
HinP1I GCGC 1 cut(s) 14
HincII GTYRAC 1 cut(s) 49
HindII GTYRAC 1 cut(s) 49
HinfI GANTC 2 cut(s) 59, 213
Hpy166II GTNNAC 1 cut(s) 49
Hpy188I TCNGA 1 cut(s) 210
Hpy188III TCNNGA 2 cut(s) 139, 240
Hpy8I GTNNAC 1 cut(s) 49
Hpy99I CGWCG 2 cut(s) 53, 221
HpyAV CCTTC 4 cut(s) 76, 82, 94, 145
HpyCH4V TGCA 2 cut(s) 119, 257
HpyF10VI GCNNNNNNNGC 1 cut(s) 243
Hsp92I GRCGYC 1 cut(s) 51
HspAI GCGC 1 cut(s) 14
LmnI GCTCC 3 cut(s) 40, 163, 202
LpnPI CCDG 1 cut(s) 29
Lsp1109I GCAGC 2 cut(s) 3, 241
LweI GCATC 3 cut(s) 94, 214, 233
MaeI CTAG 1 cut(s) 240
MboII GAAGA 2 cut(s) 54, 79
MluCI AATT 1 cut(s) 181
MlyI GAGTC 2 cut(s) 53, 222
MnlI CCTC 7 cut(s) 25, 140, 148, 193, 220, 244, 261
MseI TTAA 1 cut(s) 149
MspA1I CMGCKG 1 cut(s) 26
MwoI GCNNNNNNNGC 1 cut(s) 243
NspV TTCGAA 1 cut(s) 90
PcsI WCGNNNNNNNCGW 1 cut(s) 54
PkrI GCNGC 2 cut(s) 18, 256
PleI GAGTC 2 cut(s) 53, 221
PpsI GAGTC 2 cut(s) 53, 221
PvuII CAGCTG 1 cut(s) 26
RsaI GTAC 1 cut(s) 170
RsaNI GTAC 1 cut(s) 169
SalI GTCGAC 1 cut(s) 47
SaqAI TTAA 1 cut(s) 149
SatI GCNGC 2 cut(s) 17, 255
SchI GAGTC 2 cut(s) 53, 222
SetI ASST 6 cut(s) 28, 36, 45, 159, 168, 239
SfaNI GCATC 3 cut(s) 94, 214, 233
SfuI TTCGAA 1 cut(s) 90
SgeI CNNG 6 cut(s) 22, 56, 151, 199, 252, 270
Sse9I AATT 1 cut(s) 181
SsiI CCGC 3 cut(s) 19, 38, 161
SspMI CTAG 1 cut(s) 240
StyI CCWWGG 1 cut(s) 186
TaqI TCGA 2 cut(s) 48, 90
TasI AATT 1 cut(s) 181
Tru1I TTAA 1 cut(s) 149
Tru9I TTAA 1 cut(s) 149
TscAI CASTG 1 cut(s) 85
TseI GCWGC 2 cut(s) 16, 254
TspDTI ATGAA 1 cut(s) 64
TspRI CASTG 1 cut(s) 85
XbaI TCTAGA 1 cut(s) 239
XmiI GTMKAC 1 cut(s) 48
XspI CTAG 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.