Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009454.1

Orthogroup ID

OG0025611

Physical Location & Seq

Genomic Coordinates Forward (+)

1909 .. 5098

Gene Structure 3190 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009454.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

atgggatggtggtgtgactttgggttccgattgcggtggccccgtggaggtggtgcacaagcactgaatcttggggcggatccaagtttggttggacatgaatcggaaatagatggattcacggcgctgcggacaactgtggaggtggcggagctagtcgacgcccacaacctcttctccaccgactcttccttccccttcaacaatgccttcttcgaagccaatgccgttgccttatcttatgcaccccattccctctccttcaagagaagtttgaaagacgttgcggagctgtacggctgtgaggattccttggatgtggttgaggagcatcagagagtcgtcgtattggaggcaattagctctagatgctttgaggctgcaagagtgatgagggataaacttgtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000905 GO:0001896 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0009058 GO:0009403 GO:0009404 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010720 GO:0010913 GO:0010914 GO:0012501 GO:0018130 GO:0019222 GO:0019438 GO:0019748 GO:0019954 GO:0022414 GO:0030154 GO:0030436 GO:0030582 GO:0030584 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0034305 GO:0043385 GO:0043386 GO:0043455 GO:0043934 GO:0043937 GO:0043938 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0044550 GO:0045460 GO:0045461 GO:0045595 GO:0045597 GO:0046483 GO:0048315 GO:0048468 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0060284 GO:0061458 GO:0061794 GO:0065007 GO:0071704 GO:0075259 GO:0075306 GO:0075307 GO:1900376 GO:1900378 GO:1901360 GO:1901362 GO:1901376 GO:1901378 GO:1901576 GO:1903664 GO:1903666

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00630 ko00910 ko01100 ko01120 ko01230 ko02020 ko04217 ko04724 ko04727 map00220 map00250 map00630 map00910 map01100 map01120 map01230 map02020 map04217 map04724 map04727

Pfam Domains

Protein Families

Amidohydro_2 Gln-synt_C Gln-synt_N_2

Protein Analysis

136

Amino Acids

15.08

Weight (kDa)

4.87

Isoelectric Point (pI)

40.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025611)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0006626.1_g000008 Rmu_sc0009454.1_g000002
rosa_samantha	Rh1AG037800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	159
AciI	CCGC	5 cut(s)	34, 77, 130, 149, 287
AclWI	GGATC	2 cut(s)	74, 87
AcyI	GRCGYC	1 cut(s)	162
AfaI	GTAC	1 cut(s)	296
AfiI	CCNNNNNNNGG	1 cut(s)	47
AgsI	TTSAA	3 cut(s)	202, 265, 277
AluBI	AGCT	3 cut(s)	154, 292, 363
AluI	AGCT	3 cut(s)	154, 292, 363
Alw21I	GWGCWC	1 cut(s)	58
Alw44I	GTGCAC	1 cut(s)	54
AlwI	GGATC	2 cut(s)	74, 87
AoxI	GGCC	1 cut(s)	38
ApaLI	GTGCAC	1 cut(s)	54
ApeKI	GCWGC	2 cut(s)	127, 380
AspLEI	GCGC	1 cut(s)	127
AspS9I	GGNCC	1 cut(s)	39
AsuII	TTCGAA	1 cut(s)	216
BaeGI	GKGCMC	1 cut(s)	58
BamHI	GGATCC	1 cut(s)	79
Bbv12I	GWGCWC	1 cut(s)	58
BbvI	GCAGC	2 cut(s)	114, 367
BccI	CCATC	1 cut(s)	107
BceAI	ACGGC	3 cut(s)	138, 212, 313
BcgI	CGANNNNNNTGC	2 cut(s)	206, 240
BfaI	CTAG	2 cut(s)	155, 366
BfoI	RGCGCY	1 cut(s)	128
BisI	GCNGC	2 cut(s)	128, 381
BlsI	GCNGC	2 cut(s)	129, 382
BmgT120I	GGNCC	1 cut(s)	39
BmiI	GGNNCC	3 cut(s)	26, 41, 81
BmsI	GCATC	2 cut(s)	340, 359
Bpu14I	TTCGAA	1 cut(s)	216
BsaHI	GRCGYC	1 cut(s)	162
BsaJI	CCNNGG	2 cut(s)	43, 312
BsaXI	ACNNNNNCTCC	2 cut(s)	161, 191
Bsc4I	CCNNNNNNNGG	1 cut(s)	47
BseDI	CCNNGG	2 cut(s)	43, 312
BseGI	GGATG	2 cut(s)	11, 322
BseLI	CCNNNNNNNGG	1 cut(s)	47
BseRI	GAGGAG	1 cut(s)	341
BseSI	GKGCMC	1 cut(s)	58
BseXI	GCAGC	2 cut(s)	114, 367
BshFI	GGCC	1 cut(s)	40
BsiHKAI	GWGCWC	1 cut(s)	58
BslI	CCNNNNNNNGG	1 cut(s)	47
BsnI	GGCC	1 cut(s)	40
Bsp119I	TTCGAA	1 cut(s)	216
Bsp1286I	GDGCHC	1 cut(s)	58
Bsp143I	GATC	1 cut(s)	79
BspACI	CCGC	5 cut(s)	34, 77, 130, 149, 287
BspANI	GGCC	1 cut(s)	40
BspLI	GGNNCC	3 cut(s)	26, 41, 81
BspPI	GGATC	2 cut(s)	74, 87
BspT104I	TTCGAA	1 cut(s)	216
BssECI	CCNNGG	2 cut(s)	43, 312
BssMI	GATC	1 cut(s)	79
BssNI	GRCGYC	1 cut(s)	162
BssT1I	CCWWGG	1 cut(s)	312
Bst4CI	ACNGT	1 cut(s)	139
Bst6I	CTCTTC	2 cut(s)	179, 193
BstACI	GRCGYC	1 cut(s)	162
BstBI	TTCGAA	1 cut(s)	216
BstDSI	CCRYGG	1 cut(s)	43
BstF5I	GGATG	2 cut(s)	11, 322
BstH2I	RGCGCY	1 cut(s)	128
BstHHI	GCGC	1 cut(s)	127
BstKTI	GATC	1 cut(s)	82
BstMBI	GATC	1 cut(s)	79
BstMWI	GCNNNNNNNGC	1 cut(s)	369
BstSLI	GKGCMC	1 cut(s)	58
BstV1I	GCAGC	2 cut(s)	114, 367
BstX2I	RGATCY	1 cut(s)	79
BstYI	RGATCY	1 cut(s)	79
BsuRI	GGCC	1 cut(s)	40
BtgI	CCRYGG	1 cut(s)	43
BtsCI	GGATG	2 cut(s)	11, 322
BtsIMutI	CAGTG	1 cut(s)	62
CfoI	GCGC	1 cut(s)	127
Cfr13I	GGNCC	1 cut(s)	39
CseI	GACGC	1 cut(s)	170
Csp6I	GTAC	1 cut(s)	295
CviAII	CATG	1 cut(s)	98
CviJI	RGCY	7 cut(s)	40, 154, 221, 292, 300, 363, 380
CviKI_1	RGCY	7 cut(s)	40, 154, 221, 292, 300, 363, 380
CviQI	GTAC	1 cut(s)	295
DpnI	GATC	1 cut(s)	81
DpnII	GATC	1 cut(s)	79
Eam1104I	CTCTTC	2 cut(s)	179, 193
EarI	CTCTTC	2 cut(s)	179, 193
EciI	GGCGGA	2 cut(s)	92, 164
Eco130I	CCWWGG	1 cut(s)	312
EcoT14I	CCWWGG	1 cut(s)	312
ErhI	CCWWGG	1 cut(s)	312
FaeI	CATG	1 cut(s)	101
FaiI	YATR	3 cut(s)	99, 243, 409
FatI	CATG	1 cut(s)	97
FblI	GTMKAC	1 cut(s)	159
Fnu4HI	GCNGC	2 cut(s)	128, 381
FokI	GGATG	2 cut(s)	18, 329
Fsp4HI	GCNGC	2 cut(s)	128, 381
FspBI	CTAG	2 cut(s)	155, 366
GlaI	GCGC	1 cut(s)	126
GluI	GCNGC	2 cut(s)	128, 381
HaeII	RGCGCY	1 cut(s)	128
HaeIII	GGCC	1 cut(s)	40
HgaI	GACGC	1 cut(s)	170
HhaI	GCGC	1 cut(s)	127
Hin1I	GRCGYC	1 cut(s)	162
Hin1II	CATG	1 cut(s)	101
Hin6I	GCGC	1 cut(s)	125
HinP1I	GCGC	1 cut(s)	125
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HinfI	GANTC	6 cut(s)	67, 101, 117, 185, 308, 339
Hpy166II	GTNNAC	2 cut(s)	56, 160
Hpy188I	TCNGA	3 cut(s)	29, 106, 336
Hpy188III	TCNNGA	2 cut(s)	265, 366
Hpy8I	GTNNAC	2 cut(s)	56, 160
Hpy99I	CGWCG	2 cut(s)	164, 347
HpyAV	CCTTC	4 cut(s)	202, 208, 220, 271
HpyCH4III	ACNGT	1 cut(s)	139
HpyCH4IV	ACGT	1 cut(s)	282
HpyCH4V	TGCA	3 cut(s)	56, 245, 383
HpyF10VI	GCNNNNNNNGC	1 cut(s)	369
HpySE526I	ACGT	1 cut(s)	282
Hsp92I	GRCGYC	1 cut(s)	162
Hsp92II	CATG	1 cut(s)	101
HspAI	GCGC	1 cut(s)	125
Kzo9I	GATC	1 cut(s)	79
LmnI	GCTCC	3 cut(s)	151, 289, 328
Lsp1109I	GCAGC	2 cut(s)	114, 367
LweI	GCATC	2 cut(s)	340, 359
MaeI	CTAG	2 cut(s)	155, 366
MaeII	ACGT	1 cut(s)	282
MaeIII	GTNAC	1 cut(s)	14
MalI	GATC	1 cut(s)	81
MboI	GATC	1 cut(s)	79
MboII	GAAGA	3 cut(s)	166, 180, 205
MflI	RGATCY	1 cut(s)	79
MhlI	GDGCHC	1 cut(s)	58
MluCI	AATT	1 cut(s)	357
MlyI	GAGTC	2 cut(s)	179, 348
MmeI	TCCRAC	1 cut(s)	73
MnlI	CCTC	9 cut(s)	41, 136, 182, 266, 298, 319, 346, 370, 387
MwoI	GCNNNNNNNGC	1 cut(s)	369
NdeII	GATC	1 cut(s)	79
NlaIII	CATG	1 cut(s)	101
NlaIV	GGNNCC	3 cut(s)	26, 41, 81
NmuCI	GTSAC	1 cut(s)	14
NspV	TTCGAA	1 cut(s)	216
PfeI	GAWTC	4 cut(s)	67, 101, 117, 308
PkrI	GCNGC	2 cut(s)	129, 382
PleI	GAGTC	2 cut(s)	179, 347
PpsI	GAGTC	2 cut(s)	179, 347
PspN4I	GGNNCC	3 cut(s)	26, 41, 81
PspPI	GGNCC	1 cut(s)	39
PsuI	RGATCY	1 cut(s)	79
RsaI	GTAC	1 cut(s)	296
RsaNI	GTAC	1 cut(s)	295
SalI	GTCGAC	1 cut(s)	158
SatI	GCNGC	2 cut(s)	128, 381
Sau3AI	GATC	1 cut(s)	79
Sau96I	GGNCC	1 cut(s)	39
SchI	GAGTC	2 cut(s)	179, 348
SduI	GDGCHC	1 cut(s)	58
SetI	ASST	7 cut(s)	52, 147, 156, 174, 285, 294, 365
SfaNI	GCATC	2 cut(s)	340, 359
SfuI	TTCGAA	1 cut(s)	216
Sse9I	AATT	1 cut(s)	357
SsiI	CCGC	5 cut(s)	34, 77, 130, 149, 287
SspMI	CTAG	2 cut(s)	155, 366
StyI	CCWWGG	1 cut(s)	312
TaaI	ACNGT	1 cut(s)	139
TaiI	ACGT	1 cut(s)	285
TaqI	TCGA	2 cut(s)	159, 216
TasI	AATT	1 cut(s)	357
TfiI	GAWTC	4 cut(s)	67, 101, 117, 308
TscAI	CASTG	1 cut(s)	69
TseFI	GTSAC	1 cut(s)	14
TseI	GCWGC	2 cut(s)	127, 380
Tsp45I	GTSAC	1 cut(s)	14
TspDTI	ATGAA	1 cut(s)	114
TspRI	CASTG	1 cut(s)	69
VneI	GTGCAC	1 cut(s)	54
XbaI	TCTAGA	1 cut(s)	365
XmiI	GTMKAC	1 cut(s)	159
XspI	CTAG	2 cut(s)	155, 366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.