Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006695.1

Orthogroup ID

OG0023122

Physical Location & Seq

Genomic Coordinates Forward (+)

6534 .. 7395

Gene Structure 862 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

atgagtacagtggcacaaggcattgcgacgatagcgaatgtatgtgcaatgttatttgtcatagttgctggtacttatttgggatttaagactggctggtctggatatcaacttcctactgggtacttcccctttggggtgaatggtatgcttgccgggtctgcaactgtcttctttgcttacattggttttgattcagttgcaagcactgctgaagaggtgaagaatccccaacgagatttaccactgggtattggtgctgcactatctatatgctgtgcattgtatatgttggtttccatggtcattgttggtttagtgccttatcatgcaatggatcctgacacgcccatctctactgcatttgctagccatgggatgcaatgggctgcctatatcattactgttggagctgttactgctctctgttcgacattgatggggtctattcttccgcaggtatttaaatcggagtttatggttttgcattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0008150 GO:0009705 GO:0012505 GO:0016020 GO:0031090 GO:0031967 GO:0031975 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048878 GO:0050801 GO:0055081 GO:0065007 GO:0065008 GO:0080144 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko05206 map05206

Pfam Domains

Protein Families

AA_permease_2 AA_permease_C

Protein Analysis

163

Amino Acids

17.16

Weight (kDa)

5.33

Isoelectric Point (pI)

18.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_permease_2	PF13520	4 - 149	2.7e-18	Amino acid permease
AA_permease	PF00324	11 - 151	1.8e-17	Amino acid permease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0023122)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8095892.1_g000001 Rmu_sc0006695.1_g000001 Rmu_sc0012042.1_g000016 Rmu_sc0039489.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	97
Acc36I	ACCTGC	1 cut(s)	448
AciI	CCGC	1 cut(s)	455
AclWI	GGATC	2 cut(s)	332, 345
AcuI	CTGAAG	1 cut(s)	234
AfaI	GTAC	3 cut(s)	7, 73, 125
AfiI	CCNNNNNNNGG	1 cut(s)	136
AluBI	AGCT	1 cut(s)	413
AluI	AGCT	1 cut(s)	413
AlwI	GGATC	2 cut(s)	332, 345
ApeKI	GCWGC	2 cut(s)	260, 389
AsuC2I	CCSGG	1 cut(s)	157
AsuHPI	GGTGA	2 cut(s)	151, 232
AsuNHI	GCTAGC	1 cut(s)	368
BamHI	GGATCC	1 cut(s)	337
BbsI	GAAGAC	1 cut(s)	163
BbvI	GCAGC	2 cut(s)	247, 376
BccI	CCATC	2 cut(s)	359, 433
BcnI	CCSGG	1 cut(s)	157
BfaI	CTAG	1 cut(s)	369
BfuAI	ACCTGC	1 cut(s)	448
BisI	GCNGC	2 cut(s)	261, 390
BlsI	GCNGC	2 cut(s)	262, 391
Bme1390I	CCNGG	1 cut(s)	157
BmiI	GGNNCC	1 cut(s)	339
BmrFI	CCNGG	1 cut(s)	157
BmrI	ACTGGG	2 cut(s)	129, 257
BmsI	GCATC	1 cut(s)	369
BmtI	GCTAGC	1 cut(s)	372
BmuI	ACTGGG	2 cut(s)	129, 257
BpiI	GAAGAC	1 cut(s)	163
BpuMI	CCSGG	1 cut(s)	157
BsaJI	CCNNGG	2 cut(s)	300, 373
Bsc4I	CCNNNNNNNGG	1 cut(s)	136
Bse1I	ACTGG	3 cut(s)	97, 124, 252
Bse3DI	GCAATG	4 cut(s)	21, 54, 339, 389
BseDI	CCNNGG	2 cut(s)	300, 373
BseGI	GGATG	1 cut(s)	384
BseLI	CCNNNNNNNGG	1 cut(s)	136
BseMI	GCAATG	4 cut(s)	21, 54, 339, 389
BseNI	ACTGG	3 cut(s)	97, 124, 252
BseXI	GCAGC	2 cut(s)	247, 376
BsgI	GTGCAG	1 cut(s)	246
BsiSI	CCGG	1 cut(s)	156
BslI	CCNNNNNNNGG	1 cut(s)	136
Bsp143I	GATC	1 cut(s)	337
Bsp19I	CCATGG	2 cut(s)	300, 373
BspACI	CCGC	1 cut(s)	455
BspLI	GGNNCC	1 cut(s)	339
BspMI	ACCTGC	1 cut(s)	448
BspOI	GCTAGC	1 cut(s)	372
BspPI	GGATC	2 cut(s)	332, 345
BsrDI	GCAATG	4 cut(s)	21, 54, 339, 389
BsrI	ACTGG	3 cut(s)	97, 124, 252
BssECI	CCNNGG	2 cut(s)	300, 373
BssMI	GATC	1 cut(s)	337
BssT1I	CCWWGG	2 cut(s)	300, 373
Bst4CI	ACNGT	3 cut(s)	10, 169, 406
Bst6I	CTCTTC	1 cut(s)	210
BstAPI	GCANNNNNTGC	1 cut(s)	209
BstC8I	GCNNGC	3 cut(s)	153, 205, 370
BstDSI	CCRYGG	2 cut(s)	300, 373
BstF5I	GGATG	1 cut(s)	384
BstKTI	GATC	1 cut(s)	340
BstMBI	GATC	1 cut(s)	337
BstMWI	GCNNNNNNNGC	4 cut(s)	32, 161, 209, 419
BstSCI	CCNGG	1 cut(s)	155
BstV1I	GCAGC	2 cut(s)	247, 376
BstV2I	GAAGAC	1 cut(s)	163
BstX2I	RGATCY	1 cut(s)	337
BstYI	RGATCY	1 cut(s)	337
BtgI	CCRYGG	2 cut(s)	300, 373
BtsCI	GGATG	1 cut(s)	384
BtsI	GCAGTG	1 cut(s)	207
BtsIMutI	CAGTG	3 cut(s)	15, 207, 245
BveI	ACCTGC	1 cut(s)	448
Cac8I	GCNNGC	3 cut(s)	153, 205, 370
Csp6I	GTAC	3 cut(s)	6, 72, 124
CviAII	CATG	3 cut(s)	301, 329, 374
CviJI	RGCY	4 cut(s)	96, 372, 389, 413
CviKI_1	RGCY	4 cut(s)	96, 372, 389, 413
CviQI	GTAC	3 cut(s)	6, 72, 124
DpnI	GATC	1 cut(s)	339
DpnII	GATC	1 cut(s)	337
DraI	TTTAAA	1 cut(s)	466
DrdI	GACNNNNNNGTC	1 cut(s)	97
DseDI	GACNNNNNNGTC	1 cut(s)	97
Eam1104I	CTCTTC	1 cut(s)	210
EarI	CTCTTC	1 cut(s)	210
Eco130I	CCWWGG	2 cut(s)	300, 373
Eco32I	GATATC	1 cut(s)	107
Eco57I	CTGAAG	1 cut(s)	234
EcoRV	GATATC	1 cut(s)	107
EcoT14I	CCWWGG	2 cut(s)	300, 373
ErhI	CCWWGG	2 cut(s)	300, 373
FaeI	CATG	3 cut(s)	304, 332, 377
FatI	CATG	3 cut(s)	300, 328, 373
Fnu4HI	GCNGC	2 cut(s)	261, 390
FokI	GGATG	1 cut(s)	391
Fsp4HI	GCNGC	2 cut(s)	261, 390
FspBI	CTAG	1 cut(s)	369
GluI	GCNGC	2 cut(s)	261, 390
HapII	CCGG	1 cut(s)	156
Hin1II	CATG	3 cut(s)	304, 332, 377
HinfI	GANTC	2 cut(s)	194, 226
HpaII	CCGG	1 cut(s)	156
HphI	GGTGA	2 cut(s)	151, 232
Hpy188I	TCNGA	1 cut(s)	472
Hpy188III	TCNNGA	2 cut(s)	102, 341
Hpy99I	CGWCG	1 cut(s)	31
HpyCH4III	ACNGT	3 cut(s)	10, 169, 406
HpyCH4V	TGCA	9 cut(s)	47, 164, 203, 263, 281, 332, 362, 382, 487
HpyF10VI	GCNNNNNNNGC	4 cut(s)	32, 161, 209, 419
Hsp92II	CATG	3 cut(s)	304, 332, 377
Kzo9I	GATC	1 cut(s)	337
LmnI	GCTCC	1 cut(s)	410
LpnPI	CCDG	9 cut(s)	54, 78, 82, 87, 105, 169, 233, 354, 443
Lsp1109I	GCAGC	2 cut(s)	247, 376
LweI	GCATC	1 cut(s)	369
MaeI	CTAG	1 cut(s)	369
MaeIII	GTNAC	1 cut(s)	415
MalI	GATC	1 cut(s)	339
MboI	GATC	1 cut(s)	337
MboII	GAAGA	4 cut(s)	163, 227, 235, 443
MflI	RGATCY	1 cut(s)	337
MmeI	TCCRAC	1 cut(s)	388
MnlI	CCTC	1 cut(s)	211
MseI	TTAA	2 cut(s)	87, 465
MspI	CCGG	1 cut(s)	156
MspR9I	CCNGG	1 cut(s)	157
MwoI	GCNNNNNNNGC	4 cut(s)	32, 161, 209, 419
NciI	CCSGG	1 cut(s)	157
NcoI	CCATGG	2 cut(s)	300, 373
NdeII	GATC	1 cut(s)	337
NheI	GCTAGC	1 cut(s)	368
NlaIII	CATG	3 cut(s)	304, 332, 377
NlaIV	GGNNCC	1 cut(s)	339
PfeI	GAWTC	2 cut(s)	194, 226
PkrI	GCNGC	2 cut(s)	262, 391
PspN4I	GGNNCC	1 cut(s)	339
PsuI	RGATCY	1 cut(s)	337
RsaI	GTAC	3 cut(s)	7, 73, 125
RsaNI	GTAC	3 cut(s)	6, 72, 124
SaqAI	TTAA	2 cut(s)	87, 465
SatI	GCNGC	2 cut(s)	261, 390
Sau3AI	GATC	1 cut(s)	337
ScrFI	CCNGG	1 cut(s)	157
SetI	ASST	3 cut(s)	222, 415, 462
SfaNI	GCATC	1 cut(s)	369
SmiI	ATTTAAAT	1 cut(s)	466
SsiI	CCGC	1 cut(s)	455
SspMI	CTAG	1 cut(s)	369
StyD4I	CCNGG	1 cut(s)	155
StyI	CCWWGG	2 cut(s)	300, 373
SwaI	ATTTAAAT	1 cut(s)	466
TaaI	ACNGT	3 cut(s)	10, 169, 406
TaqI	TCGA	1 cut(s)	431
TatI	WGTACW	1 cut(s)	5
TfiI	GAWTC	2 cut(s)	194, 226
Tru1I	TTAA	2 cut(s)	87, 465
Tru9I	TTAA	2 cut(s)	87, 465
TscAI	CASTG	3 cut(s)	15, 214, 252
TseI	GCWGC	2 cut(s)	260, 389
TspRI	CASTG	3 cut(s)	15, 214, 252
XspI	CTAG	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.