Rmu_sc0006706.1_g000001

DNA repair and recombination protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006706.1
OG0020287
Physical Location & Seq
Reverse (-)
1223 .. 3486
2264 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006706.1_g000001.1.cds

Sequence Viewer

Length: 1254 bp
atggaagacgaagaagaagtcatctcactctccgattcctcctccgattccagttccagcgacgactacacagccgacccacaagacttggatctcggagaagaagaagaagaagaagaagatgatcaagagctcgaaaacgaaccagaggttcaaaacgacgacgtatgcgagaatcgtgggagacccaaggcccgccctccgcttccaccgccgtccggaaaagatcggaaatcgaagaatgtcgatgctctcctcagcggcaaccttgtggtgaaaagacagcctcttcttccacgagttctgtcggtgacggaaggagcaacagtttgtaggaaaccctttaaacctccatgctccaaaggctatgatgatggaaatgaccagctcgctcggcgtctctcagcacgcagacggtttgttccctggggcggttcatcaagtgtgtcgttttttcccgttattgagaggtttcctagtttgccaaatgatgctgagaaagatgtagtggaagagagtgtgaccctgccacctggaattgatcctttggtcttgtggcaacctgaagaattcgaggatggggatgctaatatggtgcagatagtagtggaccctctgctcgttcgtttccttcgaccacatcaaagagaaggggttcaattcatgtttgattgtgttgcgggcataaatagtgctgcaaatatacatggatgtattcttgcagatgatatggggttgggaaagacattgcagtcaatcacattactttatacccttctttaccaagggtttgatgggaaatcaatggttaaaaaggccattatagtcactcccaccagtcttgtgagcaattgggaggctgagataaagaagtgggtcggagacagagtttgcctcattgctctgtgtgaaagtaccagagatgatgttgtttctggaattgatcagttcacaagtgctcgcagccgtttgcaggttctaattgtttcttacgaaacattccgaatgcattgtacaaagtttagccacagtgaatcgtgtgaccttctcatatgtgatgaggcgcacaggctaaagaatgaccaaacgatgacgaatagggcattggctgctctttcatgcaagcggaggattttgttgtcaggaactccaatgcagaatgacctagaagagttctttgccatggtcaacttcactaatccaggaatcttaggtgatgctgcacattttcgtcgctactatgaggtgagctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000018 GO:0000280 GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006311 GO:0006325 GO:0006338 GO:0006342 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010035 GO:0010038 GO:0010212 GO:0010332 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015616 GO:0016043 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0022402 GO:0022414 GO:0030491 GO:0030702 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0033170 GO:0033554 GO:0034641 GO:0035822 GO:0035825 GO:0035861 GO:0040029 GO:0042221 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045003 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048285 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051321 GO:0051701 GO:0051704 GO:0051716 GO:0060255 GO:0061806 GO:0061982 GO:0065007 GO:0070887 GO:0071214 GO:0071241 GO:0071248 GO:0071478 GO:0071479 GO:0071480 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090734 GO:0097159 GO:0104004 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1902679 GO:1903046 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03440 map03440
Pfam Domains
Protein Families
Helicase_C SNF2_N

Protein Analysis

417

Amino Acids

46.6

Weight (kDa)

4.69

Isoelectric Point (pI)

51.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020287)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g06200 FvH4_2g06200
rosa_multiflora Rmu_sc0006706.1_g000001
rosa_samantha Rh6AG093900 Rh6CG081500 Rh6DG076900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 751
Acc36I ACCTGC 1 cut(s) 964
AccIII TCCGGA 1 cut(s) 218
AciI CCGC 7 cut(s) 196, 203, 212, 261, 432, 680, 1126
AclWI GGATC 2 cut(s) 99, 536
AcsI RAATTY 1 cut(s) 569
AcuI CTGAAG 1 cut(s) 585
AcyI GRCGYC 1 cut(s) 397
AfaI GTAC 2 cut(s) 916, 1015
AfiI CCNNNNNNNGG 3 cut(s) 218, 431, 973
AgsI TTSAA 2 cut(s) 155, 659
AjnI CCWGG 3 cut(s) 425, 532, 1201
AjuI GAANNNNNNNTTGG 2 cut(s) 1088, 1120
AluBI AGCT 3 cut(s) 133, 388, 1251
AluI AGCT 3 cut(s) 133, 388, 1251
Alw21I GWGCWC 2 cut(s) 135, 961
Alw26I GTCTC 3 cut(s) 178, 404, 876
AlwI GGATC 2 cut(s) 99, 536
Aor13HI TCCGGA 1 cut(s) 218
AoxI GGCC 2 cut(s) 192, 816
ApeKI GCWGC 4 cut(s) 695, 963, 1109, 1220
ApoI RAATTY 1 cut(s) 569
ArsI GACNNNNNNTTYG 1 cut(s) 35
Asp700I GAANNNNTTC 1 cut(s) 654
AspLEI GCGC 1 cut(s) 1066
AspS9I GGNCC 2 cut(s) 193, 610
AsuHPI GGTGA 3 cut(s) 286, 322, 1226
AvaII GGWCC 1 cut(s) 610
BanII GRGCYC 1 cut(s) 135
BauI CACGAG 1 cut(s) 297
BbsI GAAGAC 1 cut(s) 12
Bbv12I GWGCWC 2 cut(s) 135, 961
BbvCI CCTCAGC 1 cut(s) 257
BbvI GCAGC 4 cut(s) 682, 975, 1096, 1207
BccI CCATC 3 cut(s) 368, 572, 788
BceAI ACGGC 2 cut(s) 199, 951
BciT130I CCWGG 3 cut(s) 427, 534, 1203
BclI TGATCA 2 cut(s) 124, 943
BcoDI GTCTC 3 cut(s) 178, 404, 876
BfaI CTAG 2 cut(s) 477, 1166
BfuAI ACCTGC 1 cut(s) 964
BisI GCNGC 5 cut(s) 262, 696, 964, 1110, 1221
BlsI GCNGC 5 cut(s) 263, 697, 965, 1111, 1222
Bme1390I CCNGG 3 cut(s) 427, 534, 1203
Bme18I GGWCC 1 cut(s) 610
BmgT120I GGNCC 2 cut(s) 193, 610
BmiI GGNNCC 1 cut(s) 612
BmrFI CCNGG 3 cut(s) 427, 534, 1203
BmsI GCATC 4 cut(s) 238, 481, 574, 1207
BpiI GAAGAC 1 cut(s) 12
BplI GAGNNNNNCTC 2 cut(s) 879, 911
Bpu10I CCTNAGC 1 cut(s) 257
BsaHI GRCGYC 1 cut(s) 397
BsaI GGTCTC 1 cut(s) 178
BsaJI CCNNGG 5 cut(s) 189, 425, 426, 784, 1182
BsaWI WCCGGW 1 cut(s) 218
BsaXI ACNNNNNCTCC 4 cut(s) 312, 342, 873, 903
Bsc4I CCNNNNNNNGG 3 cut(s) 218, 431, 973
Bse1I ACTGG 2 cut(s) 51, 837
Bse3DI GCAATG 2 cut(s) 746, 897
BseAI TCCGGA 1 cut(s) 218
BseBI CCWGG 3 cut(s) 427, 534, 1203
BseDI CCNNGG 5 cut(s) 189, 425, 426, 784, 1182
BseGI GGATG 3 cut(s) 583, 589, 716
BseLI CCNNNNNNNGG 3 cut(s) 218, 431, 973
BseMI GCAATG 2 cut(s) 746, 897
BseMII CTCAG 4 cut(s) 271, 417, 486, 852
BseNI ACTGG 2 cut(s) 51, 837
BseRI GAGGAG 2 cut(s) 31, 245
BseXI GCAGC 4 cut(s) 682, 975, 1096, 1207
BsgI GTGCAG 2 cut(s) 617, 1206
BshFI GGCC 2 cut(s) 194, 818
BsiHKAI GWGCWC 2 cut(s) 135, 961
BsiSI CCGG 1 cut(s) 219
BslI CCNNNNNNNGG 3 cut(s) 218, 431, 973
BsmAI GTCTC 3 cut(s) 178, 404, 876
BsmBI CGTCTC 1 cut(s) 404
BsmI GAATGC 1 cut(s) 1011
BsnI GGCC 2 cut(s) 194, 818
Bso31I GGTCTC 1 cut(s) 178
Bsp1286I GDGCHC 2 cut(s) 135, 961
Bsp13I TCCGGA 1 cut(s) 218
Bsp1407I TGTACA 1 cut(s) 1013
Bsp143I GATC 5 cut(s) 91, 124, 226, 541, 943
Bsp19I CCATGG 1 cut(s) 1182
BspACI CCGC 7 cut(s) 196, 203, 212, 261, 432, 680, 1126
BspANI GGCC 2 cut(s) 194, 818
BspCNI CTCAG 4 cut(s) 270, 416, 487, 853
BspEI TCCGGA 1 cut(s) 218
BspLI GGNNCC 1 cut(s) 612
BspMI ACCTGC 1 cut(s) 964
BspPI GGATC 2 cut(s) 99, 536
BspTNI GGTCTC 1 cut(s) 178
BsrDI GCAATG 2 cut(s) 746, 897
BsrGI TGTACA 1 cut(s) 1013
BsrI ACTGG 2 cut(s) 51, 837
BssECI CCNNGG 5 cut(s) 189, 425, 426, 784, 1182
BssMI GATC 5 cut(s) 91, 124, 226, 541, 943
BssNI GRCGYC 1 cut(s) 397
BssSI CACGAG 1 cut(s) 297
BssT1I CCWWGG 3 cut(s) 189, 784, 1182
Bst2BI CACGAG 1 cut(s) 297
Bst2UI CCWGG 3 cut(s) 427, 534, 1203
Bst4CI ACNGT 3 cut(s) 328, 417, 1031
Bst6I CTCTTC 3 cut(s) 294, 507, 1164
BstACI GRCGYC 1 cut(s) 397
BstAPI GCANNNNNTGC 1 cut(s) 1109
BstAUI TGTACA 1 cut(s) 1013
BstC8I GCNNGC 6 cut(s) 196, 390, 409, 682, 961, 1124
BstDEI CTNAG 5 cut(s) 257, 403, 495, 861, 1210
BstDSI CCRYGG 1 cut(s) 1182
BstF5I GGATG 3 cut(s) 583, 589, 716
BstHHI GCGC 1 cut(s) 1066
BstKTI GATC 5 cut(s) 94, 127, 229, 544, 946
BstMAI GTCTC 3 cut(s) 178, 404, 876
BstMBI GATC 5 cut(s) 91, 124, 226, 541, 943
BstMWI GCNNNNNNNGC 4 cut(s) 211, 363, 394, 1109
BstNI CCWGG 3 cut(s) 427, 534, 1203
BstSCI CCNGG 3 cut(s) 425, 532, 1201
BstV1I GCAGC 4 cut(s) 682, 975, 1096, 1207
BstV2I GAAGAC 1 cut(s) 12
BstX2I RGATCY 1 cut(s) 91
BstYI RGATCY 1 cut(s) 91
BsuRI GGCC 2 cut(s) 194, 818
BtgI CCRYGG 1 cut(s) 1182
BtsCI GGATG 3 cut(s) 583, 589, 716
BtsIMutI CAGTG 1 cut(s) 1036
BveI ACCTGC 1 cut(s) 964
Cac8I GCNNGC 6 cut(s) 196, 390, 409, 682, 961, 1124
CfoI GCGC 1 cut(s) 1066
Cfr13I GGNCC 2 cut(s) 193, 610
CseI GACGC 1 cut(s) 386
Csp6I GTAC 2 cut(s) 915, 1014
CspCI CAANNNNNGTGG 4 cut(s) 69, 104, 823, 858
CviAII CATG 5 cut(s) 354, 664, 707, 1119, 1183
CviQI GTAC 2 cut(s) 915, 1014
DdeI CTNAG 5 cut(s) 257, 403, 495, 861, 1210
DpnI GATC 5 cut(s) 93, 126, 228, 543, 945
DpnII GATC 5 cut(s) 91, 124, 226, 541, 943
DraI TTTAAA 1 cut(s) 346
DrdI GACNNNNNNGTC 1 cut(s) 751
DseDI GACNNNNNNGTC 1 cut(s) 751
Eam1104I CTCTTC 3 cut(s) 294, 507, 1164
EarI CTCTTC 3 cut(s) 294, 507, 1164
Ecl136II GAGCTC 1 cut(s) 133
Eco130I CCWWGG 3 cut(s) 189, 784, 1182
Eco24I GRGCYC 1 cut(s) 135
Eco31I GGTCTC 1 cut(s) 178
Eco47I GGWCC 1 cut(s) 610
Eco53kI GAGCTC 1 cut(s) 133
Eco57I CTGAAG 1 cut(s) 585
EcoICRI GAGCTC 1 cut(s) 133
EcoRI GAATTC 1 cut(s) 569
EcoRII CCWGG 3 cut(s) 425, 532, 1201
EcoT14I CCWWGG 3 cut(s) 189, 784, 1182
EcoT22I ATGCAT 1 cut(s) 1011
EcoT38I GRGCYC 1 cut(s) 135
ErhI CCWWGG 3 cut(s) 189, 784, 1182
Esp3I CGTCTC 1 cut(s) 404
FaeI CATG 5 cut(s) 357, 667, 710, 1122, 1186
FatI CATG 5 cut(s) 353, 663, 706, 1118, 1182
FauI CCCGC 2 cut(s) 203, 673
FauNDI CATATG 1 cut(s) 1052
FbaI TGATCA 2 cut(s) 124, 943
Fnu4HI GCNGC 5 cut(s) 262, 696, 964, 1110, 1221
FokI GGATG 3 cut(s) 590, 596, 723
FriOI GRGCYC 1 cut(s) 135
Fsp4HI GCNGC 5 cut(s) 262, 696, 964, 1110, 1221
FspBI CTAG 2 cut(s) 477, 1166
GlaI GCGC 1 cut(s) 1065
GluI GCNGC 5 cut(s) 262, 696, 964, 1110, 1221
HaeIII GGCC 2 cut(s) 194, 818
HapII CCGG 1 cut(s) 219
HgaI GACGC 1 cut(s) 386
HhaI GCGC 1 cut(s) 1066
Hin1I GRCGYC 1 cut(s) 397
Hin1II CATG 5 cut(s) 357, 667, 710, 1122, 1186
Hin6I GCGC 1 cut(s) 1064
HinP1I GCGC 1 cut(s) 1064
HincII GTYRAC 1 cut(s) 1189
HindII GTYRAC 1 cut(s) 1189
HinfI GANTC 5 cut(s) 35, 47, 175, 1034, 1206
HpaII CCGG 1 cut(s) 219
HphI GGTGA 3 cut(s) 286, 322, 1226
Hpy166II GTNNAC 3 cut(s) 610, 951, 1189
Hpy188I TCNGA 6 cut(s) 34, 46, 98, 231, 881, 1004
Hpy188III TCNNGA 4 cut(s) 128, 219, 936, 1143
Hpy8I GTNNAC 3 cut(s) 610, 951, 1189
Hpy99I CGWCG 4 cut(s) 65, 164, 167, 1236
HpyAV CCTTC 5 cut(s) 311, 641, 644, 785, 1055
HpyCH4III ACNGT 3 cut(s) 328, 417, 1031
HpyCH4IV ACGT 1 cut(s) 165
HpyCH4V TGCA 9 cut(s) 598, 698, 722, 751, 973, 1009, 1122, 1156, 1223
HpyF10VI GCNNNNNNNGC 4 cut(s) 211, 363, 394, 1109
HpyF3I CTNAG 5 cut(s) 257, 403, 495, 861, 1210
HpySE526I ACGT 1 cut(s) 165
Hsp92I GRCGYC 1 cut(s) 397
Hsp92II CATG 5 cut(s) 357, 667, 710, 1122, 1186
HspAI GCGC 1 cut(s) 1064
Kpn2I TCCGGA 1 cut(s) 218
Ksp22I TGATCA 2 cut(s) 124, 943
Kzo9I GATC 5 cut(s) 91, 124, 226, 541, 943
LmnI GCTCC 2 cut(s) 320, 362
Lsp1109I GCAGC 4 cut(s) 682, 975, 1096, 1207
LweI GCATC 4 cut(s) 238, 481, 574, 1207
MaeI CTAG 2 cut(s) 477, 1166
MaeII ACGT 1 cut(s) 165
MaeIII GTNAC 4 cut(s) 310, 520, 826, 1040
MalI GATC 5 cut(s) 93, 126, 228, 543, 945
MboI GATC 5 cut(s) 91, 124, 226, 541, 943
MfeI CAATTG 1 cut(s) 850
MflI RGATCY 1 cut(s) 91
MhlI GDGCHC 2 cut(s) 135, 961
MluCI AATT 6 cut(s) 537, 569, 659, 850, 939, 981
MmeI TCCRAC 1 cut(s) 859
Mph1103I ATGCAT 1 cut(s) 1011
MroI TCCGGA 1 cut(s) 218
MroXI GAANNNNTTC 1 cut(s) 654
MseI TTAA 2 cut(s) 345, 810
MspA1I CMGCKG 1 cut(s) 261
MspI CCGG 1 cut(s) 219
MspR9I CCNGG 3 cut(s) 427, 534, 1203
MunI CAATTG 1 cut(s) 850
Mva1269I GAATGC 1 cut(s) 1011
MvaI CCWGG 3 cut(s) 427, 534, 1203
MwoI GCNNNNNNNGC 4 cut(s) 211, 363, 394, 1109
NcoI CCATGG 1 cut(s) 1182
NdeI CATATG 1 cut(s) 1052
NdeII GATC 5 cut(s) 91, 124, 226, 541, 943
NlaIII CATG 5 cut(s) 357, 667, 710, 1122, 1186
NlaIV GGNNCC 1 cut(s) 612
NmeAIII GCCGAG 1 cut(s) 373
NmuCI GTSAC 4 cut(s) 310, 520, 826, 1040
NsiI ATGCAT 1 cut(s) 1011
PasI CCCWGGG 1 cut(s) 426
PcsI WCGNNNNNNNCGW 2 cut(s) 168, 631
PctI GAATGC 1 cut(s) 1011
PdmI GAANNNNTTC 1 cut(s) 654
PfeI GAWTC 5 cut(s) 35, 47, 175, 1034, 1206
PfoI TCCNGGA 1 cut(s) 1201
PkrI GCNGC 5 cut(s) 263, 697, 965, 1111, 1222
Psp124BI GAGCTC 1 cut(s) 135
Psp6I CCWGG 3 cut(s) 425, 532, 1201
PspGI CCWGG 3 cut(s) 425, 532, 1201
PspN4I GGNNCC 1 cut(s) 612
PspPI GGNCC 2 cut(s) 193, 610
PsuI RGATCY 1 cut(s) 91
RsaI GTAC 2 cut(s) 916, 1015
RsaNI GTAC 2 cut(s) 915, 1014
SacI GAGCTC 1 cut(s) 135
SaqAI TTAA 2 cut(s) 345, 810
SatI GCNGC 5 cut(s) 262, 696, 964, 1110, 1221
Sau3AI GATC 5 cut(s) 91, 124, 226, 541, 943
Sau96I GGNCC 2 cut(s) 193, 610
ScrFI CCNGG 3 cut(s) 427, 534, 1203
SduI GDGCHC 2 cut(s) 135, 961
SfaNI GCATC 4 cut(s) 238, 481, 574, 1207
SinI GGWCC 1 cut(s) 610
Sse9I AATT 6 cut(s) 537, 569, 659, 850, 939, 981
SsiI CCGC 7 cut(s) 196, 203, 212, 261, 432, 680, 1126
SspMI CTAG 2 cut(s) 477, 1166
SstI GAGCTC 1 cut(s) 135
StyD4I CCNGG 3 cut(s) 425, 532, 1201
StyI CCWWGG 3 cut(s) 189, 784, 1182
TaaI ACNGT 3 cut(s) 328, 417, 1031
TaiI ACGT 1 cut(s) 168
TaqI TCGA 5 cut(s) 135, 236, 246, 573, 634
TasI AATT 6 cut(s) 537, 569, 659, 850, 939, 981
TatI WGTACW 1 cut(s) 1013
TauI GCSGC 1 cut(s) 264
TfiI GAWTC 5 cut(s) 35, 47, 175, 1034, 1206
Tru1I TTAA 2 cut(s) 345, 810
Tru9I TTAA 2 cut(s) 345, 810
TscAI CASTG 1 cut(s) 1036
TseFI GTSAC 4 cut(s) 310, 520, 826, 1040
TseI GCWGC 4 cut(s) 695, 963, 1109, 1220
Tsp45I GTSAC 4 cut(s) 310, 520, 826, 1040
TspDTI ATGAA 3 cut(s) 426, 652, 1107
TspGWI ACGGA 1 cut(s) 329
TspRI CASTG 1 cut(s) 1036
VpaK11BI GGWCC 1 cut(s) 610
XapI RAATTY 1 cut(s) 569
XcmI CCANNNNNNNNNTGG 1 cut(s) 791
XmnI GAANNNNTTC 1 cut(s) 654
XspI CTAG 2 cut(s) 477, 1166
Zsp2I ATGCAT 1 cut(s) 1011
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.