FvH4_2g06200

DNA repair and recombination protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0008727
Physical Location & Seq
Forward (+)
5141513 .. 5150219
8707 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g06200.t2

Sequence Viewer

Length: 2220 bp
ATGTTTGATTGTGTTGCGGGATTAAACAGTGCTGCAAATATAAATGGATGTATTCTCGCAGATGATATGGGTTTGGGAAAAACATTGCAGTCGATCACATTACTTTATACCCTTCTCTACCAAGGGTTTGATGGGAAATCAATGGTTAAAAAGGCCATTATAGTCACTCCTACCAGTCTTGTGAGCAATTGGGAGGCTGAGATAAAAAAGTGGGTCGGAGACAGAGTTCACCTCATTGCTCTATGTGAAAGCACAAGAGATGATGTTGTTTCTGGAATCAATCAGTTCACAAGTACTCGCAGCCGTTTGCAGGTCTTAATTGTTTCTTACGAGACATTCCGGATGCATTGTACAAAGTTTAGCCACAGTGAATCGTGTGACCTTCTCATATGTGATGAGGCTCACAGGCTAAAGAATGATCAGACGATGACGAATAAGGCATTGGCTGCTCTTTCATGCAAGCGGAGGATTTTGTTGTCAGGAACTCCAATGCAGAATGACTTAGAAGAGTTCTATGCCATGGTCAACTTCACTAATCCAGGAATCTTAGGTGATGCTGCACATTTTCGTCGCTACTATGAGGCACCTATTATTTGTGGAAGAGAACCTAATGCCTGTGAAGAAGAGAGGAATCTAGGTCTTGAGCGCTCTTCAGAACTAAGTGCAACAGTTAATCAGTTTATACTGCGGAGGACTAATGCACTACTTTCAAATCACCTGCCACCAAAGATAATTGAAGTCGTCTGTTGCAAGTTGACTCCTCTCCAGTTAGACCTTTATAACCATTTTATACATTCTAAAAATGTTAAACGAGCAATCTCAGAAGACACAAAGCAAACAAAAATATTAGCTTATATAACTGCTCTAAAGAAGCTATGCAATCACCCAAAGCTCATCTATGATACTATAAAAAGTGGAAGTCCAGGAACTTCAGGTTTTGAGGACTGTATTCGCTTTTTCCCTCCACAGATGTTCTCTGGAAGATCTGGATCATGGACTGGCGGAGACGGAGCTTGGGTTGAACTGTCAGGAAAGATGCAAGTTTTAGCTCGATTGCTTGCCCAATTACGAAACAAGACTGATGACCGCATTGTCCTTGTCTCAAACTATACGCAGACACTGGACCTATTTGCACAATTGTGTCGAGAAAGAAGATACCCATATCTGAGGCTTGATGGAACGACATCTATCAGTAAAAGACAGAAGTTAGTAAACCAATTCAATGACCCCTCAAAGGATGAATTTGCATTTCTCTTAAGCAGCAAGGCTGGTGGCTGTGGTCTCAATTTGATAGGCGGAAATCGACTGGTGTTGTTTGATCCTGATTGGAATCCAGCCAACGATAAACAAGCTGCTGCTAGAGTTTGGAGGGATGGGCAAAAGAAGAGAGTATACATTTATAGATTTTTGAGTACTGGAACAATTGAAGAAAAGGTCTACCAGCGTCAGATGTCAAAAGAAGGACTTCAAAAAGTTATTCAGAAGGAACAAGCCGATAGCCCAATGGCACAGGGGAATCTTTCAATTGAGGACCTACGAGATCTGTTCACATTTCATGAAAACGCGAGGTCTGACGTGCATGAGAAGATGAATTGCATCCGTTGTCAAACTTATCATGATACACCTCAGAGTTTAGCAGAGGGAGATATAAACCAATCAACTCATAACAGCAGTGAGTTTTCACCAGAAATCTCTGACATAGGTGGATTTGCAGAAATTGCTGGATGCTTGCAGAGGTTAAAGAGCTCAGAAAAGCAGATCGGGACACCTCTAGAGGAAGATTTAAGTAACTGGGGACATCATTTCTACCCTACTTCAGTACCCGATGCTATTCTCCAGGCTTCAGCTGGCAATGAGGTTACTTTTGTTTTTACAAACCAAGTGGATGGGAAGCTTGTGCCTATTGAATCAAAGGTAAGCTCAAAGATGCAGGGAGAAGTAGGAAAAGAGAATATTTTCAAATCAAAGAAAAACCCGAATCGGAAATCCATGCTGATGTCTTGGCAACGAAAACCACTTGAATCTCTTTCTTCGAGTGCAAATACTACCAGAGGCACATTATCCGCCCATTTGAAGTCCTCACAAAGCTCCTCTGTGAAATCAGGGATAACTTCTTTAAAGGGTTCAATAGCATTGAAGCCTCAACTCTCTCTTGGAAATCGATTGCCCCAGAAAAGATCTTCTCCTGATACTGTTGAACATGATGATGATTTTCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000018 GO:0000280 GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006311 GO:0006325 GO:0006338 GO:0006342 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010035 GO:0010038 GO:0010212 GO:0010332 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015616 GO:0016043 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0022402 GO:0022414 GO:0030491 GO:0030702 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0033170 GO:0033554 GO:0034641 GO:0035822 GO:0035825 GO:0035861 GO:0040029 GO:0042221 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045003 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048285 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051321 GO:0051701 GO:0051704 GO:0051716 GO:0060255 GO:0061806 GO:0061982 GO:0065007 GO:0070887 GO:0071214 GO:0071241 GO:0071248 GO:0071478 GO:0071479 GO:0071480 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090734 GO:0097159 GO:0104004 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1902679 GO:1903046 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03440 map03440
Pfam Domains
Protein Families
Helicase_C SNF2_N

Protein Analysis

740

Amino Acids

82.67

Weight (kDa)

8.62

Isoelectric Point (pI)

44.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ResIII PF04851 209 - 382 1.8e-09 Type III restriction enzyme, res subunit
SNF2-rel_dom PF00176 212 - 517 2.2e-72 SNF2-related domain
DEAD PF00270 236 - 389 1e-08 DEAD/DEAH box helicase
Helicase_C PF00271 564 - 678 1.4e-20 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 780
AarI CACCTGC 1 cut(s) 726
AasI GACNNNNNNGTC 1 cut(s) 1091
Acc36I ACCTGC 2 cut(s) 301, 726
AccB1I GGYRCC 1 cut(s) 583
AccI GTMKAC 2 cut(s) 1392, 1437
AccII CGCG 1 cut(s) 1565
AccIII TCCGGA 1 cut(s) 339
AciI CCGC 7 cut(s) 17, 463, 688, 1002, 1087, 1296, 2064
AclWI GGATC 2 cut(s) 997, 1313
AcsI RAATTY 1 cut(s) 1241
AcuI CTGAAG 4 cut(s) 636, 915, 1800, 1827
AfaI GTAC 4 cut(s) 295, 352, 1414, 1821
AfeI AGCGCT 1 cut(s) 647
AfiI CCNNNNNNNGG 2 cut(s) 310, 1234
AflII CTTAAG 1 cut(s) 1255
AjiI CACGTC 1 cut(s) 1576
AjnI CCWGG 3 cut(s) 538, 922, 1836
AjuI GAANNNNNNNTTGG 2 cut(s) 425, 457
AleI CACNNNNGTG 1 cut(s) 1138
AloI GAACNNNNNNTCC 2 cut(s) 210, 242
Alw21I GWGCWC 1 cut(s) 1748
Alw26I GTCTC 5 cut(s) 213, 326, 999, 1105, 1286
AlwI GGATC 2 cut(s) 997, 1313
AlwNI CAGNNNCTG 1 cut(s) 1120
Aor13HI TCCGGA 1 cut(s) 339
Aor51HI AGCGCT 1 cut(s) 647
AoxI GGCC 1 cut(s) 153
ApeKI GCWGC 7 cut(s) 32, 300, 446, 557, 1260, 1352, 1355
ApoI RAATTY 1 cut(s) 1241
Asp700I GAANNNNTTC 2 cut(s) 1464, 1955
AspLEI GCGC 1 cut(s) 648
AspS9I GGNCC 2 cut(s) 1123, 1531
AsuHPI GGTGA 5 cut(s) 221, 563, 707, 875, 1674
AvaII GGWCC 2 cut(s) 1123, 1531
BaeI ACNNNNGTAYC 2 cut(s) 1803, 1836
BanI GGYRCC 1 cut(s) 583
BanII GRGCYC 1 cut(s) 1748
BarI GAAGNNNNNNTAC 2 cut(s) 1376, 1408
BbsI GAAGAC 1 cut(s) 831
Bbv12I GWGCWC 1 cut(s) 1748
BbvI GCAGC 7 cut(s) 19, 312, 433, 544, 1272, 1339, 1342
BccI CCATC 4 cut(s) 125, 1169, 1367, 1880
BceAI ACGGC 1 cut(s) 288
BciT130I CCWGG 3 cut(s) 540, 924, 1838
BclI TGATCA 1 cut(s) 418
BcoDI GTCTC 5 cut(s) 213, 326, 999, 1105, 1286
BfaI CTAG 3 cut(s) 635, 1359, 1772
BfoI RGCGCY 1 cut(s) 649
BfrI CTTAAG 1 cut(s) 1255
BfuAI ACCTGC 2 cut(s) 301, 726
BglII AGATCT 3 cut(s) 983, 1540, 2177
BisI GCNGC 7 cut(s) 33, 301, 447, 558, 1261, 1353, 1356
BlsI GCNGC 7 cut(s) 34, 302, 448, 559, 1262, 1354, 1357
BmcAI AGTACT 2 cut(s) 295, 1414
Bme1390I CCNGG 3 cut(s) 540, 924, 1838
Bme18I GGWCC 2 cut(s) 1123, 1531
BmgBI CACGTC 1 cut(s) 1576
BmgT120I GGNCC 2 cut(s) 1123, 1531
BmiI GGNNCC 1 cut(s) 585
BmrFI CCNGG 3 cut(s) 540, 924, 1838
BmrI ACTGGG 1 cut(s) 1801
BmsI GCATC 7 cut(s) 333, 544, 1026, 1605, 1715, 1816, 1917
BmuI ACTGGG 1 cut(s) 1801
BpiI GAAGAC 1 cut(s) 831
BplI GAGNNNNNCTC 2 cut(s) 216, 248
BpmI CTGGAG 2 cut(s) 749, 1820
BpuEI CTTGAG 1 cut(s) 662
Bsa29I ATCGAT 1 cut(s) 2161
BsaBI GATNNNNATC 2 cut(s) 988, 1329
BsaI GGTCTC 1 cut(s) 1286
BsaJI CCNNGG 2 cut(s) 121, 519
BsaWI WCCGGW 1 cut(s) 339
BsaXI ACNNNNNCTCC 4 cut(s) 210, 240, 1002, 1032
Bsc4I CCNNNNNNNGG 2 cut(s) 310, 1234
Bse1I ACTGG 7 cut(s) 174, 766, 1003, 1125, 1311, 1420, 1796
Bse3DI GCAATG 3 cut(s) 83, 234, 1858
Bse8I GATNNNNATC 2 cut(s) 988, 1329
BseAI TCCGGA 1 cut(s) 339
BseBI CCWGG 3 cut(s) 540, 924, 1838
BseCI ATCGAT 1 cut(s) 2161
BseDI CCNNGG 2 cut(s) 121, 519
BseGI GGATG 7 cut(s) 53, 348, 1243, 1378, 1596, 1730, 1891
BseJI GATNNNNATC 2 cut(s) 988, 1329
BseLI CCNNNNNNNGG 2 cut(s) 310, 1234
BseMI GCAATG 3 cut(s) 83, 234, 1858
BseMII CTCAG 5 cut(s) 189, 834, 1157, 1640, 1761
BseNI ACTGG 7 cut(s) 174, 766, 1003, 1125, 1311, 1420, 1796
BseRI GAGGAG 2 cut(s) 750, 2080
BseXI GCAGC 7 cut(s) 19, 312, 433, 544, 1272, 1339, 1342
BsgI GTGCAG 1 cut(s) 543
Bsh1236I CGCG 1 cut(s) 1565
BshFI GGCC 1 cut(s) 155
BshNI GGYRCC 1 cut(s) 583
BshVI ATCGAT 1 cut(s) 2161
BsiHKAI GWGCWC 1 cut(s) 1748
BsiSI CCGG 1 cut(s) 340
BslFI GGGAC 2 cut(s) 1777, 1809
BslI CCNNNNNNNGG 2 cut(s) 310, 1234
BsmAI GTCTC 5 cut(s) 213, 326, 999, 1105, 1286
BsmBI CGTCTC 1 cut(s) 999
BsmFI GGGAC 2 cut(s) 1777, 1809
BsnI GGCC 1 cut(s) 155
Bso31I GGTCTC 1 cut(s) 1286
Bsp1286I GDGCHC 1 cut(s) 1748
Bsp13I TCCGGA 1 cut(s) 339
Bsp1407I TGTACA 1 cut(s) 350
Bsp143I GATC 8 cut(s) 93, 418, 983, 989, 1318, 1540, 1758, 2177
Bsp19I CCATGG 1 cut(s) 519
BspACI CCGC 7 cut(s) 17, 463, 688, 1002, 1087, 1296, 2064
BspANI GGCC 1 cut(s) 155
BspCNI CTCAG 5 cut(s) 190, 833, 1158, 1639, 1760
BspDI ATCGAT 1 cut(s) 2161
BspEI TCCGGA 1 cut(s) 339
BspFNI CGCG 1 cut(s) 1565
BspHI TCATGA 2 cut(s) 1555, 1615
BspLI GGNNCC 1 cut(s) 585
BspMI ACCTGC 2 cut(s) 301, 726
BspPI GGATC 2 cut(s) 997, 1313
BspQI GCTCTTC 1 cut(s) 655
BspT107I GGYRCC 1 cut(s) 583
BspTI CTTAAG 1 cut(s) 1255
BspTNI GGTCTC 1 cut(s) 1286
BsrDI GCAATG 3 cut(s) 83, 234, 1858
BsrGI TGTACA 1 cut(s) 350
BsrI ACTGG 7 cut(s) 174, 766, 1003, 1125, 1311, 1420, 1796
BssECI CCNNGG 2 cut(s) 121, 519
BssMI GATC 8 cut(s) 93, 418, 983, 989, 1318, 1540, 1758, 2177
BssNAI GTATAC 1 cut(s) 1393
BssT1I CCWWGG 2 cut(s) 121, 519
Bst1107I GTATAC 1 cut(s) 1393
Bst2UI CCWGG 3 cut(s) 540, 924, 1838
Bst4CI ACNGT 6 cut(s) 29, 368, 670, 947, 1026, 2194
Bst6I CTCTTC 5 cut(s) 501, 595, 618, 655, 1379
BstAFI CTTAAG 1 cut(s) 1255
BstAPI GCANNNNNTGC 2 cut(s) 446, 1718
BstAUI TGTACA 1 cut(s) 350
BstC8I GCNNGC 4 cut(s) 461, 1059, 1730, 1849
BstDEI CTNAG 8 cut(s) 198, 502, 547, 659, 820, 1166, 1626, 1747
BstDSI CCRYGG 1 cut(s) 519
BstF5I GGATG 7 cut(s) 53, 348, 1243, 1378, 1596, 1730, 1891
BstFNI CGCG 1 cut(s) 1565
BstH2I RGCGCY 1 cut(s) 649
BstHHI GCGC 1 cut(s) 648
BstKTI GATC 8 cut(s) 96, 421, 986, 992, 1321, 1543, 1761, 2180
BstMAI GTCTC 5 cut(s) 213, 326, 999, 1105, 1286
BstMBI GATC 8 cut(s) 93, 418, 983, 989, 1318, 1540, 1758, 2177
BstMWI GCNNNNNNNGC 2 cut(s) 446, 1718
BstNI CCWGG 3 cut(s) 540, 924, 1838
BstSCI CCNGG 3 cut(s) 538, 922, 1836
BstUI CGCG 1 cut(s) 1565
BstV1I GCAGC 7 cut(s) 19, 312, 433, 544, 1272, 1339, 1342
BstV2I GAAGAC 1 cut(s) 831
BstX2I RGATCY 3 cut(s) 983, 1540, 2177
BstXI CCANNNNNNTGG 1 cut(s) 1886
BstYI RGATCY 3 cut(s) 983, 1540, 2177
BstZ17I GTATAC 1 cut(s) 1393
Bsu15I ATCGAT 1 cut(s) 2161
BsuRI GGCC 1 cut(s) 155
BsuTUI ATCGAT 1 cut(s) 2161
BtgI CCRYGG 1 cut(s) 519
BtrI CACGTC 1 cut(s) 1576
BtsCI GGATG 7 cut(s) 53, 348, 1243, 1378, 1596, 1730, 1891
BtsI GCAGTG 1 cut(s) 1678
BtsIMutI CAGTG 4 cut(s) 34, 373, 1118, 1678
BveI ACCTGC 2 cut(s) 301, 726
Cac8I GCNNGC 4 cut(s) 461, 1059, 1730, 1849
CaiI CAGNNNCTG 1 cut(s) 1120
CciI TCATGA 2 cut(s) 1555, 1615
CfoI GCGC 1 cut(s) 648
Cfr13I GGNCC 2 cut(s) 1123, 1531
ClaI ATCGAT 1 cut(s) 2161
CseI GACGC 1 cut(s) 1433
Csp6I GTAC 4 cut(s) 294, 351, 1413, 1820
CspCI CAANNNNNGTGG 4 cut(s) 1252, 1287, 1863, 1898
CviAII CATG 8 cut(s) 456, 520, 993, 1556, 1580, 1616, 1990, 2201
CviQI GTAC 4 cut(s) 294, 351, 1413, 1820
DdeI CTNAG 8 cut(s) 198, 502, 547, 659, 820, 1166, 1626, 1747
DpnI GATC 8 cut(s) 95, 420, 985, 991, 1320, 1542, 1760, 2179
DpnII GATC 8 cut(s) 93, 418, 983, 989, 1318, 1540, 1758, 2177
DraI TTTAAA 1 cut(s) 2118
DrdI GACNNNNNNGTC 1 cut(s) 1091
DseDI GACNNNNNNGTC 1 cut(s) 1091
Eam1104I CTCTTC 5 cut(s) 501, 595, 618, 655, 1379
EarI CTCTTC 5 cut(s) 501, 595, 618, 655, 1379
EciI GGCGGA 3 cut(s) 1017, 1311, 2053
Ecl136II GAGCTC 1 cut(s) 1746
Eco130I CCWWGG 2 cut(s) 121, 519
Eco24I GRGCYC 1 cut(s) 1748
Eco31I GGTCTC 1 cut(s) 1286
Eco47I GGWCC 2 cut(s) 1123, 1531
Eco47III AGCGCT 1 cut(s) 647
Eco53kI GAGCTC 1 cut(s) 1746
Eco57I CTGAAG 4 cut(s) 636, 915, 1800, 1827
EcoICRI GAGCTC 1 cut(s) 1746
EcoO109I RGGNCCY 1 cut(s) 1531
EcoRII CCWGG 3 cut(s) 538, 922, 1836
EcoT14I CCWWGG 2 cut(s) 121, 519
EcoT22I ATGCAT 1 cut(s) 348
EcoT38I GRGCYC 1 cut(s) 1748
ErhI CCWWGG 2 cut(s) 121, 519
Esp3I CGTCTC 1 cut(s) 999
FaeI CATG 8 cut(s) 459, 523, 996, 1559, 1583, 1619, 1993, 2204
FalI AAGNNNNNCTT 2 cut(s) 1449, 1481
FaqI GGGAC 2 cut(s) 1777, 1809
FatI CATG 8 cut(s) 455, 519, 992, 1555, 1579, 1615, 1989, 2200
FauI CCCGC 1 cut(s) 10
FauNDI CATATG 1 cut(s) 389
FbaI TGATCA 1 cut(s) 418
FblI GTMKAC 2 cut(s) 1392, 1437
Fnu4HI GCNGC 7 cut(s) 33, 301, 447, 558, 1261, 1353, 1356
FokI GGATG 7 cut(s) 60, 355, 1250, 1385, 1583, 1737, 1898
FriOI GRGCYC 1 cut(s) 1748
Fsp4HI GCNGC 7 cut(s) 33, 301, 447, 558, 1261, 1353, 1356
FspBI CTAG 3 cut(s) 635, 1359, 1772
GlaI GCGC 1 cut(s) 647
GluI GCNGC 7 cut(s) 33, 301, 447, 558, 1261, 1353, 1356
GsuI CTGGAG 2 cut(s) 749, 1820
HaeII RGCGCY 1 cut(s) 649
HaeIII GGCC 1 cut(s) 155
HapII CCGG 1 cut(s) 340
HgaI GACGC 1 cut(s) 1433
HhaI GCGC 1 cut(s) 648
Hin1II CATG 8 cut(s) 459, 523, 996, 1559, 1583, 1619, 1993, 2204
Hin6I GCGC 1 cut(s) 646
HinP1I GCGC 1 cut(s) 646
HincII GTYRAC 2 cut(s) 526, 756
HindII GTYRAC 2 cut(s) 526, 756
HindIII AAGCTT 1 cut(s) 1892
HpaII CCGG 1 cut(s) 340
HphI GGTGA 5 cut(s) 221, 563, 707, 875, 1674
Hpy166II GTNNAC 8 cut(s) 229, 288, 526, 756, 1213, 1393, 1438, 1548
Hpy8I GTNNAC 8 cut(s) 229, 288, 526, 756, 1213, 1393, 1438, 1548
Hpy99I CGWCG 1 cut(s) 573
HpyAV CCTTC 4 cut(s) 122, 392, 1454, 1477
HpyCH4III ACNGT 6 cut(s) 29, 368, 670, 947, 1026, 2194
HpyCH4IV ACGT 1 cut(s) 1575
HpyF10VI GCNNNNNNNGC 2 cut(s) 446, 1718
HpyF3I CTNAG 8 cut(s) 198, 502, 547, 659, 820, 1166, 1626, 1747
HpySE526I ACGT 1 cut(s) 1575
Hsp92II CATG 8 cut(s) 459, 523, 996, 1559, 1583, 1619, 1993, 2204
HspAI GCGC 1 cut(s) 646
Kpn2I TCCGGA 1 cut(s) 339
Ksp22I TGATCA 1 cut(s) 418
Kzo9I GATC 8 cut(s) 93, 418, 983, 989, 1318, 1540, 1758, 2177
LguI GCTCTTC 1 cut(s) 655
LmnI GCTCC 2 cut(s) 1010, 2093
Lsp1109I GCAGC 7 cut(s) 19, 312, 433, 544, 1272, 1339, 1342
LweI GCATC 7 cut(s) 333, 544, 1026, 1605, 1715, 1816, 1917
MaeI CTAG 3 cut(s) 635, 1359, 1772
MaeII ACGT 1 cut(s) 1575
MaeIII GTNAC 4 cut(s) 163, 377, 1787, 1858
MalI GATC 8 cut(s) 95, 420, 985, 991, 1320, 1542, 1760, 2179
MboI GATC 8 cut(s) 93, 418, 983, 989, 1318, 1540, 1758, 2177
MfeI CAATTG 4 cut(s) 187, 1136, 1422, 1524
MflI RGATCY 3 cut(s) 983, 1540, 2177
MhlI GDGCHC 1 cut(s) 1748
MlyI GAGTC 1 cut(s) 751
MmeI TCCRAC 1 cut(s) 196
Mph1103I ATGCAT 1 cut(s) 348
MroI TCCGGA 1 cut(s) 339
MroXI GAANNNNTTC 2 cut(s) 1464, 1955
MseI TTAA 9 cut(s) 23, 147, 317, 672, 807, 1256, 1739, 1784, 2117
MslI CAYNNNNRTG 3 cut(s) 1138, 1994, 2205
MspA1I CMGCKG 1 cut(s) 1847
MspCI CTTAAG 1 cut(s) 1255
MspI CCGG 1 cut(s) 340
MspR9I CCNGG 3 cut(s) 540, 924, 1838
MunI CAATTG 4 cut(s) 187, 1136, 1422, 1524
MvaI CCWGG 3 cut(s) 540, 924, 1838
MvnI CGCG 1 cut(s) 1565
MwoI GCNNNNNNNGC 2 cut(s) 446, 1718
NcoI CCATGG 1 cut(s) 519
NdeI CATATG 1 cut(s) 389
NdeII GATC 8 cut(s) 93, 418, 983, 989, 1318, 1540, 1758, 2177
NlaIII CATG 8 cut(s) 459, 523, 996, 1559, 1583, 1619, 1993, 2204
NlaIV GGNNCC 1 cut(s) 585
NmuCI GTSAC 2 cut(s) 163, 377
NsiI ATGCAT 1 cut(s) 348
OliI CACNNNNGTG 1 cut(s) 1138
PagI TCATGA 2 cut(s) 1555, 1615
PaqCI CACCTGC 1 cut(s) 726
PciSI GCTCTTC 1 cut(s) 655
PdmI GAANNNNTTC 2 cut(s) 1464, 1955
PfeI GAWTC 9 cut(s) 276, 371, 543, 631, 1330, 1516, 1907, 1978, 2021
PfoI TCCNGGA 2 cut(s) 538, 922
PkrI GCNGC 7 cut(s) 34, 302, 448, 559, 1262, 1354, 1357
PleI GAGTC 1 cut(s) 751
PpsI GAGTC 1 cut(s) 751
PpuMI RGGWCCY 1 cut(s) 1531
PsiI TTATAA 1 cut(s) 780
Psp124BI GAGCTC 1 cut(s) 1748
Psp5II RGGWCCY 1 cut(s) 1531
Psp6I CCWGG 3 cut(s) 538, 922, 1836
PspGI CCWGG 3 cut(s) 538, 922, 1836
PspN4I GGNNCC 1 cut(s) 585
PspPI GGNCC 2 cut(s) 1123, 1531
PspPPI RGGWCCY 1 cut(s) 1531
PstNI CAGNNNCTG 1 cut(s) 1120
PsuI RGATCY 3 cut(s) 983, 1540, 2177
PvuII CAGCTG 1 cut(s) 1847
RsaI GTAC 4 cut(s) 295, 352, 1414, 1821
RsaNI GTAC 4 cut(s) 294, 351, 1413, 1820
RseI CAYNNNNRTG 3 cut(s) 1138, 1994, 2205
SacI GAGCTC 1 cut(s) 1748
SapI GCTCTTC 1 cut(s) 655
SaqAI TTAA 9 cut(s) 23, 147, 317, 672, 807, 1256, 1739, 1784, 2117
SatI GCNGC 7 cut(s) 33, 301, 447, 558, 1261, 1353, 1356
Sau3AI GATC 8 cut(s) 93, 418, 983, 989, 1318, 1540, 1758, 2177
Sau96I GGNCC 2 cut(s) 1123, 1531
ScaI AGTACT 2 cut(s) 295, 1414
SchI GAGTC 1 cut(s) 751
ScrFI CCNGG 3 cut(s) 540, 924, 1838
SduI GDGCHC 1 cut(s) 1748
SfaNI GCATC 7 cut(s) 333, 544, 1026, 1605, 1715, 1816, 1917
SinI GGWCC 2 cut(s) 1123, 1531
SmiMI CAYNNNNRTG 3 cut(s) 1138, 1994, 2205
SmlI CTYRAG 2 cut(s) 641, 1255
SmoI CTYRAG 2 cut(s) 641, 1255
SsiI CCGC 7 cut(s) 17, 463, 688, 1002, 1087, 1296, 2064
SspI AATATT 2 cut(s) 846, 1954
SspMI CTAG 3 cut(s) 635, 1359, 1772
SstI GAGCTC 1 cut(s) 1748
StyD4I CCNGG 3 cut(s) 538, 922, 1836
StyI CCWWGG 2 cut(s) 121, 519
TaaI ACNGT 6 cut(s) 29, 368, 670, 947, 1026, 2194
TaiI ACGT 1 cut(s) 1578
TaqI TCGA 6 cut(s) 92, 1051, 1144, 1303, 2033, 2161
TatI WGTACW 3 cut(s) 293, 350, 1412
TfiI GAWTC 9 cut(s) 276, 371, 543, 631, 1330, 1516, 1907, 1978, 2021
Tru1I TTAA 9 cut(s) 23, 147, 317, 672, 807, 1256, 1739, 1784, 2117
Tru9I TTAA 9 cut(s) 23, 147, 317, 672, 807, 1256, 1739, 1784, 2117
TscAI CASTG 4 cut(s) 34, 373, 1125, 1678
TseFI GTSAC 2 cut(s) 163, 377
TseI GCWGC 7 cut(s) 32, 300, 446, 557, 1260, 1352, 1355
Tsp45I GTSAC 2 cut(s) 163, 377
TspDTI ATGAA 5 cut(s) 444, 1254, 1544, 1572, 1604
TspGWI ACGGA 2 cut(s) 1023, 1589
TspRI CASTG 4 cut(s) 34, 373, 1125, 1678
Vha464I CTTAAG 1 cut(s) 1255
VpaK11BI GGWCC 2 cut(s) 1123, 1531
XapI RAATTY 1 cut(s) 1241
XbaI TCTAGA 1 cut(s) 1771
XcmI CCANNNNNNNNNTGG 2 cut(s) 128, 1844
XmiI GTMKAC 2 cut(s) 1392, 1437
XmnI GAANNNNTTC 2 cut(s) 1464, 1955
XspI CTAG 3 cut(s) 635, 1359, 1772
ZrmI AGTACT 2 cut(s) 295, 1414
Zsp2I ATGCAT 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.