Rw6G008080

DNA repair and recombination protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0008727
Physical Location & Seq
Forward (+)
13704834 .. 13713529
8696 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G008080.1

Sequence Viewer

Length: 2880 bp
ATGGAAGACGAAGAAGAAGTCATCTCACTCTCCGATTCCTCCTCCGATTCCAGTTCCAGCGACGACTACACAGCCGACCCACAAGACTTGGATCTCGGAGAAGAAGAAGAAGAAGAAGATCAAGAGCTCGAAAACGAACCAGAGGTTCAAAACGACGACGTACGCGAGAATCGTCGGAGACCCAAGGCCCGCCCTCTGCCTCCCCCGCCGCCGTCCGGAAAAGATCGAAAATCGAAGAATGTCGATGCTCTCCTCAGCGGCAACCTTGTGGTGAAAAGACAGCCTCTTCTTCCACGAGTTCTGTCGGTGACGGAAGGAGCAACAGTTTGTAGGAAACCCTTTAAACCACCATGCTCCAAAGGCTATGATGATGGAAATGACCAGCTCGCTCGGCGTCTCTCAGCACGCAGACGGTTTGTTCCCTGGGGCGGTTCATCAAGTGCACCGTTTTTTCCCGTTATTGAGAGGTTTCCTAGTTTGCCAAATGATGCTGAGAAAGATGTAGTGGAAGAGAGTGTGACCCTGCCACCTGGAATTGATCCTTTGGTCTTGTGGCAACCTGAAGAATTAGAGGATGGGGATGCTAATATGGTGCAGATAGTAGTGGACCCTCTGCTCGTTCGTTTCCTTCGACCACATCAAAGAGAAGGGGTTCAATTCATGTTTGATTGTGTTGCGGGCATAAATATTGCTGCAAATATACATGGATGTATTCTTGCAGATGATATGGGGTTGGGAAAGACATTGCAGTCAATCACATTACTTTATACCCTTCTTTACCAAGGGTTTGATGGGAAATCAATGGTTAAAAAGGCCATTATAGTCACTCCCACCAGTCTTGTGAGCAATTGGGAAGCTGAGATAAAGAAGTGGGTCGGAGACAGAGTTTGCCTCATTGCTCTGTGTGAAAGTACCAGAGATGATGTTGTTTCTGGAATTGATCAGTTCACAAGTGCTCGCAGCCGTTTGCAGGTTCTAATTGTTTCTTACGAAACATTCCGAATGCATTGTACAAAGTTTAGCCACAGTGAATCGTGTGACCTTCTCATATGTGATGAGGCGCACAGGCTAAAGAATGACCAAACGATGACGAATAGGGCATTGGCTGCTCTTTCATGCAAGCGGAGGATTTTGTTGTCAGGAACTCCAATGCAGAATGACCTAGAAGAGTTCTTTGCCATGGTCAACTTCACTAATCCAGGAATCTTAGGTGATGCTGCACATTTTCGTCGCTTCTATGAGGCACCTATTATTTGTGGAAGAGAACCTAATGCCTGTGAAGAAGAGAGGAAACTAGGTCTTGAGCGCTCTTCAGAACTCAGTGCAAAAGTTAATCAGTTTATACTGCGGAGGACTAATGCACTACTTTCAAATCACCTGCCACCAAAGATAATTGAAGTTGTCTGTTGCAAGTTGACTCCTCTCCAATTAGACCTTTATAACCATTTTATACATTCCAAAAATGTTAAACGAGCAATCTCAGAAGACACAAAGCAAACAAAAATATTAGCTTATATAACTGCTTTAAAGAAGCTATGCAATCATCCAAAGCTCATCTATGATACTATAAAAAGTGGAAGTCCAGGAACTTCAGGTTTTGAGGACTGCATGCGCTTTTTCCCTCCACAGATGTTCTCTGGAAGATCTGGATCATGGACTGGCGGAGATGGGGCTTGGGTTGAACTGTCAGGAAAGATGCATGTTTTAGCTAGGTTACTTGCCCAATTACGAAAGAAGACTGATGACCGTATTGTCCTTGTCTCAAACTATACGCAGACACTGGACCTTTTTGCCCAATTGTGTCGAGAAAGAAGATACCCATATTTGAGGCTTGACGGAACAACTTCTATCAGTAAAAGACAGAAACTAGTAAACCAATTCAATGACCCCTCAAAGGATGAATTTGCATTTCTCTTAAGCAGTAAGGCTGGTGGCTGTGGTCTCAATTTGATAGGCGGAAATCGACTGGTGTTGTTTGATCCTGATTGGAATCCAGCCAATGATAAACAAGCTGCTGCTAGAGTTTGGAGGGATGGGCAAAAGAAGAGAGTATACATTTATAGATTTTTGAGTACTGGAACAATTGAAGAAAAGGTCTACCAGCGTCAGATGTCAAAAGAAGGGCTTCAAAAAGTTATTCAGAAGGAACAAGCCGATAGCCCAATGGCACAGGGGAATCTTTCAATTGAGGACCTACGCGATTTGTTCACATTTCATGAGAATGTGAGGTCTGATGTGCATGAGAAGATGAACTGCAACCGTTGTCAAACTTATCATGATACACCTCAGAGTACAGCAGAGGAAGATATAAACCAATCAACTTATAAATGCAGTGAGTCTGCACTAGAAAACTCTGATATAGGTGGATTTGCAGAAATTACTGGATGCTTACAGAAGTTAAAGAGCTCAGAAAAGCAGATAGGGACACCTCTAGAGGAAGATTTAAGTAACTGGGGGCATCATTTCTTCTCTACTTCAGTACCCGATGCTATTCTCCAAGCTTCAGCTGGTGATGAGGTCACTTTTGTTTTTACAAACCAAGTGGACGGGAAGCTTGTGCCTATAGAATCAAAAGCAAGTCCAAAGATGCAGGGAGAAGAAGGAAAAGAGAATATTTTCAAATCAAAGCAAAACCTGAATCAGAAATCCATGCTAATGTCTTGGCAAAGAAAACCACTTGAATCTCTTTCTTCGAGTGTAAATACTGCCAGAAGCACATTATCAGCCCCTTTCAGGCCCTCACAAAACACCACTGTGCAATCAGGGATAACCTCTTTAAAGGGTTCAGTAGCATTGAAGCCTAAACTCTCTCTTGGAAATCGGTTGCCCCAGAAAAGATCTTCTCCTGATACTGTTGAACATGATGATGATTTTCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000018 GO:0000280 GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006311 GO:0006325 GO:0006338 GO:0006342 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010035 GO:0010038 GO:0010212 GO:0010332 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015616 GO:0016043 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0022402 GO:0022414 GO:0030491 GO:0030702 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0033170 GO:0033554 GO:0034641 GO:0035822 GO:0035825 GO:0035861 GO:0040029 GO:0042221 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045003 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048285 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051321 GO:0051701 GO:0051704 GO:0051716 GO:0060255 GO:0061806 GO:0061982 GO:0065007 GO:0070887 GO:0071214 GO:0071241 GO:0071248 GO:0071478 GO:0071479 GO:0071480 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090734 GO:0097159 GO:0104004 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1902679 GO:1903046 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03440 map03440
Pfam Domains
Protein Families
Helicase_C SNF2_N

Protein Analysis

959

Amino Acids

107.55

Weight (kDa)

5.92

Isoelectric Point (pI)

52.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ResIII PF04851 210 - 383 6.3e-09 Type III restriction enzyme, res subunit
SNF2-rel_dom PF00176 213 - 518 8.5e-71 SNF2-related domain
DEAD PF00270 235 - 390 1.7e-08 DEAD/DEAH box helicase
Helicase_C PF00271 565 - 679 1.5e-20 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1440, 2325
AarI CACCTGC 1 cut(s) 1386
AasI GACNNNNNNGTC 2 cut(s) 748, 1751
Acc36I ACCTGC 2 cut(s) 961, 1386
AccB1I GGYRCC 1 cut(s) 1243
AccI GTMKAC 2 cut(s) 2052, 2097
AccII CGCG 2 cut(s) 165, 2199
AccIII TCCGGA 1 cut(s) 215
AclWI GGATC 4 cut(s) 99, 533, 1657, 1973
AcsI RAATTY 1 cut(s) 1901
AcuI CTGAAG 5 cut(s) 582, 1296, 1575, 2460, 2487
AcyI GRCGYC 1 cut(s) 394
AfaI GTAC 6 cut(s) 162, 913, 1012, 2074, 2293, 2481
AfeI AGCGCT 1 cut(s) 1307
AfiI CCNNNNNNNGG 5 cut(s) 215, 428, 970, 1894, 2733
AflII CTTAAG 1 cut(s) 1915
AhlI ACTAGT 1 cut(s) 1867
AjnI CCWGG 4 cut(s) 422, 529, 1198, 1582
AjuI GAANNNNNNNTTGG 2 cut(s) 1085, 1117
AleI CACNNNNGTG 1 cut(s) 2753
Alw21I GWGCWC 4 cut(s) 129, 445, 958, 2408
Alw26I GTCTC 5 cut(s) 172, 401, 873, 1765, 1946
Alw44I GTGCAC 1 cut(s) 441
AlwI GGATC 4 cut(s) 99, 533, 1657, 1973
AlwNI CAGNNNCTG 1 cut(s) 1780
Aor13HI TCCGGA 1 cut(s) 215
Aor51HI AGCGCT 1 cut(s) 1307
AoxI GGCC 3 cut(s) 186, 813, 2735
ApaLI GTGCAC 1 cut(s) 441
ApeKI GCWGC 6 cut(s) 692, 960, 1106, 1217, 2012, 2015
ApoI RAATTY 1 cut(s) 1901
ArsI GACNNNNNNTTYG 1 cut(s) 35
Asp700I GAANNNNTTC 4 cut(s) 651, 1843, 2124, 2615
AspLEI GCGC 3 cut(s) 1063, 1308, 1614
AspS9I GGNCC 5 cut(s) 187, 607, 1783, 2191, 2736
AsuHPI GGTGA 5 cut(s) 283, 319, 1223, 1367, 2522
AvaII GGWCC 3 cut(s) 607, 1783, 2191
BaeGI GKGCMC 1 cut(s) 445
BaeI ACNNNNGTAYC 2 cut(s) 2463, 2496
BanI GGYRCC 1 cut(s) 1243
BanII GRGCYC 2 cut(s) 129, 2408
BarI GAAGNNNNNNTAC 2 cut(s) 2036, 2068
BauI CACGAG 1 cut(s) 294
BbsI GAAGAC 3 cut(s) 12, 1491, 1742
Bbv12I GWGCWC 4 cut(s) 129, 445, 958, 2408
BbvCI CCTCAGC 1 cut(s) 254
BbvI GCAGC 6 cut(s) 679, 972, 1093, 1204, 1999, 2002
BccI CCATC 5 cut(s) 365, 569, 785, 1661, 2027
BceAI ACGGC 2 cut(s) 196, 948
BciT130I CCWGG 4 cut(s) 424, 531, 1200, 1584
BclI TGATCA 1 cut(s) 940
BcoDI GTCTC 5 cut(s) 172, 401, 873, 1765, 1946
BcuI ACTAGT 1 cut(s) 1867
BfaI CTAG 8 cut(s) 474, 1163, 1295, 1710, 1868, 2019, 2345, 2432
BfmI CTRYAG 1 cut(s) 2562
BfoI RGCGCY 1 cut(s) 1309
BfrI CTTAAG 1 cut(s) 1915
BfuAI ACCTGC 2 cut(s) 961, 1386
BglII AGATCT 2 cut(s) 1643, 2837
BisI GCNGC 8 cut(s) 209, 259, 693, 961, 1107, 1218, 2013, 2016
BlsI GCNGC 8 cut(s) 210, 260, 694, 962, 1108, 1219, 2014, 2017
BmcAI AGTACT 1 cut(s) 2074
Bme1390I CCNGG 4 cut(s) 424, 531, 1200, 1584
Bme18I GGWCC 3 cut(s) 607, 1783, 2191
BmgT120I GGNCC 5 cut(s) 187, 607, 1783, 2191, 2736
BmiI GGNNCC 2 cut(s) 609, 1245
BmrFI CCNGG 4 cut(s) 424, 531, 1200, 1584
BmrI ACTGGG 1 cut(s) 2461
BmsI GCATC 9 cut(s) 235, 478, 571, 1204, 1686, 2375, 2467, 2476, 2577
BmuI ACTGGG 1 cut(s) 2461
BpiI GAAGAC 3 cut(s) 12, 1491, 1742
BplI GAGNNNNNCTC 2 cut(s) 876, 908
Bpu10I CCTNAGC 1 cut(s) 254
BpuEI CTTGAG 1 cut(s) 1322
BsaBI GATNNNNATC 2 cut(s) 1648, 1989
BsaHI GRCGYC 1 cut(s) 394
BsaI GGTCTC 2 cut(s) 172, 1946
BsaJI CCNNGG 5 cut(s) 183, 422, 423, 781, 1179
BsaWI WCCGGW 1 cut(s) 215
BsaXI ACNNNNNCTCC 4 cut(s) 309, 339, 870, 900
Bsc4I CCNNNNNNNGG 5 cut(s) 215, 428, 970, 1894, 2733
Bse1I ACTGG 8 cut(s) 51, 834, 1663, 1785, 1971, 2080, 2386, 2456
Bse3DI GCAATG 2 cut(s) 743, 894
Bse8I GATNNNNATC 2 cut(s) 1648, 1989
BseAI TCCGGA 1 cut(s) 215
BseBI CCWGG 4 cut(s) 424, 531, 1200, 1584
BseDI CCNNGG 5 cut(s) 183, 422, 423, 781, 1179
BseGI GGATG 7 cut(s) 580, 586, 713, 1543, 1903, 2038, 2390
BseJI GATNNNNATC 2 cut(s) 1648, 1989
BseLI CCNNNNNNNGG 5 cut(s) 215, 428, 970, 1894, 2733
BseMI GCAATG 2 cut(s) 743, 894
BseMII CTCAG 8 cut(s) 268, 414, 483, 849, 1333, 1494, 2300, 2421
BseNI ACTGG 8 cut(s) 51, 834, 1663, 1785, 1971, 2080, 2386, 2456
BseRI GAGGAG 3 cut(s) 31, 242, 1410
BseSI GKGCMC 1 cut(s) 445
BseXI GCAGC 6 cut(s) 679, 972, 1093, 1204, 1999, 2002
BsgI GTGCAG 3 cut(s) 614, 1203, 2325
Bsh1236I CGCG 2 cut(s) 165, 2199
BshFI GGCC 3 cut(s) 188, 815, 2737
BshNI GGYRCC 1 cut(s) 1243
BsiHKAI GWGCWC 4 cut(s) 129, 445, 958, 2408
BsiSI CCGG 1 cut(s) 216
BsiWI CGTACG 1 cut(s) 160
BslFI GGGAC 1 cut(s) 2437
BslI CCNNNNNNNGG 5 cut(s) 215, 428, 970, 1894, 2733
BsmAI GTCTC 5 cut(s) 172, 401, 873, 1765, 1946
BsmBI CGTCTC 1 cut(s) 401
BsmFI GGGAC 1 cut(s) 2437
BsmI GAATGC 1 cut(s) 1008
BsnI GGCC 3 cut(s) 188, 815, 2737
Bso31I GGTCTC 2 cut(s) 172, 1946
Bsp1286I GDGCHC 4 cut(s) 129, 445, 958, 2408
Bsp13I TCCGGA 1 cut(s) 215
Bsp1407I TGTACA 1 cut(s) 1010
Bsp143I GATC 9 cut(s) 91, 118, 223, 538, 940, 1643, 1649, 1978, 2837
Bsp19I CCATGG 1 cut(s) 1179
BspANI GGCC 3 cut(s) 188, 815, 2737
BspCNI CTCAG 8 cut(s) 267, 413, 484, 850, 1332, 1493, 2299, 2420
BspEI TCCGGA 1 cut(s) 215
BspFNI CGCG 2 cut(s) 165, 2199
BspHI TCATGA 2 cut(s) 2215, 2275
BspLI GGNNCC 2 cut(s) 609, 1245
BspMI ACCTGC 2 cut(s) 961, 1386
BspPI GGATC 4 cut(s) 99, 533, 1657, 1973
BspQI GCTCTTC 1 cut(s) 1315
BspT107I GGYRCC 1 cut(s) 1243
BspTI CTTAAG 1 cut(s) 1915
BspTNI GGTCTC 2 cut(s) 172, 1946
BsrDI GCAATG 2 cut(s) 743, 894
BsrGI TGTACA 1 cut(s) 1010
BsrI ACTGG 8 cut(s) 51, 834, 1663, 1785, 1971, 2080, 2386, 2456
BssECI CCNNGG 5 cut(s) 183, 422, 423, 781, 1179
BssMI GATC 9 cut(s) 91, 118, 223, 538, 940, 1643, 1649, 1978, 2837
BssNAI GTATAC 1 cut(s) 2053
BssNI GRCGYC 1 cut(s) 394
BssSI CACGAG 1 cut(s) 294
BssT1I CCWWGG 3 cut(s) 183, 781, 1179
Bst1107I GTATAC 1 cut(s) 2053
Bst2BI CACGAG 1 cut(s) 294
Bst2UI CCWGG 4 cut(s) 424, 531, 1200, 1584
Bst4CI ACNGT 9 cut(s) 325, 414, 447, 1028, 1686, 1748, 2261, 2755, 2854
Bst6I CTCTTC 7 cut(s) 291, 504, 1161, 1255, 1278, 1315, 2039
BstACI GRCGYC 1 cut(s) 394
BstAFI CTTAAG 1 cut(s) 1915
BstAPI GCANNNNNTGC 1 cut(s) 1106
BstAUI TGTACA 1 cut(s) 1010
BstC8I GCNNGC 7 cut(s) 190, 387, 406, 679, 958, 1121, 1610
BstDEI CTNAG 9 cut(s) 254, 400, 492, 858, 1207, 1319, 1480, 2286, 2407
BstDSI CCRYGG 1 cut(s) 1179
BstF5I GGATG 7 cut(s) 580, 586, 713, 1543, 1903, 2038, 2390
BstFNI CGCG 2 cut(s) 165, 2199
BstH2I RGCGCY 1 cut(s) 1309
BstHHI GCGC 3 cut(s) 1063, 1308, 1614
BstKTI GATC 9 cut(s) 94, 121, 226, 541, 943, 1646, 1652, 1981, 2840
BstMAI GTCTC 5 cut(s) 172, 401, 873, 1765, 1946
BstMBI GATC 9 cut(s) 91, 118, 223, 538, 940, 1643, 1649, 1978, 2837
BstMWI GCNNNNNNNGC 4 cut(s) 205, 360, 391, 1106
BstNI CCWGG 4 cut(s) 424, 531, 1200, 1584
BstNSI RCATGY 2 cut(s) 1612, 1703
BstSCI CCNGG 4 cut(s) 422, 529, 1198, 1582
BstSFI CTRYAG 1 cut(s) 2562
BstSLI GKGCMC 1 cut(s) 445
BstUI CGCG 2 cut(s) 165, 2199
BstV1I GCAGC 6 cut(s) 679, 972, 1093, 1204, 1999, 2002
BstV2I GAAGAC 3 cut(s) 12, 1491, 1742
BstX2I RGATCY 3 cut(s) 91, 1643, 2837
BstYI RGATCY 3 cut(s) 91, 1643, 2837
BstZ17I GTATAC 1 cut(s) 2053
BsuRI GGCC 3 cut(s) 188, 815, 2737
BtgI CCRYGG 1 cut(s) 1179
BtsCI GGATG 7 cut(s) 580, 586, 713, 1543, 1903, 2038, 2390
BtsI GCAGTG 1 cut(s) 2338
BtsIMutI CAGTG 5 cut(s) 1033, 1327, 1778, 2338, 2751
BveI ACCTGC 2 cut(s) 961, 1386
Cac8I GCNNGC 7 cut(s) 190, 387, 406, 679, 958, 1121, 1610
CaiI CAGNNNCTG 1 cut(s) 1780
CciI TCATGA 2 cut(s) 2215, 2275
CfoI GCGC 3 cut(s) 1063, 1308, 1614
Cfr13I GGNCC 5 cut(s) 187, 607, 1783, 2191, 2736
CseI GACGC 2 cut(s) 383, 2093
Csp6I GTAC 6 cut(s) 161, 912, 1011, 2073, 2292, 2480
CspCI CAANNNNNGTGG 6 cut(s) 69, 104, 820, 855, 2523, 2558
CviQI GTAC 6 cut(s) 161, 912, 1011, 2073, 2292, 2480
DdeI CTNAG 9 cut(s) 254, 400, 492, 858, 1207, 1319, 1480, 2286, 2407
DpnI GATC 9 cut(s) 93, 120, 225, 540, 942, 1645, 1651, 1980, 2839
DpnII GATC 9 cut(s) 91, 118, 223, 538, 940, 1643, 1649, 1978, 2837
DraI TTTAAA 3 cut(s) 343, 1527, 2778
DrdI GACNNNNNNGTC 2 cut(s) 748, 1751
DseDI GACNNNNNNGTC 2 cut(s) 748, 1751
Eam1104I CTCTTC 7 cut(s) 291, 504, 1161, 1255, 1278, 1315, 2039
EarI CTCTTC 7 cut(s) 291, 504, 1161, 1255, 1278, 1315, 2039
EciI GGCGGA 2 cut(s) 1677, 1971
Ecl136II GAGCTC 2 cut(s) 127, 2406
Eco130I CCWWGG 3 cut(s) 183, 781, 1179
Eco24I GRGCYC 2 cut(s) 129, 2408
Eco31I GGTCTC 2 cut(s) 172, 1946
Eco47I GGWCC 3 cut(s) 607, 1783, 2191
Eco47III AGCGCT 1 cut(s) 1307
Eco53kI GAGCTC 2 cut(s) 127, 2406
Eco57I CTGAAG 5 cut(s) 582, 1296, 1575, 2460, 2487
EcoICRI GAGCTC 2 cut(s) 127, 2406
EcoO109I RGGNCCY 2 cut(s) 2191, 2736
EcoRII CCWGG 4 cut(s) 422, 529, 1198, 1582
EcoT14I CCWWGG 3 cut(s) 183, 781, 1179
EcoT22I ATGCAT 2 cut(s) 1008, 1701
EcoT38I GRGCYC 2 cut(s) 129, 2408
ErhI CCWWGG 3 cut(s) 183, 781, 1179
Esp3I CGTCTC 1 cut(s) 401
FalI AAGNNNNNCTT 2 cut(s) 2109, 2141
FaqI GGGAC 1 cut(s) 2437
FauI CCCGC 3 cut(s) 197, 213, 670
FauNDI CATATG 1 cut(s) 1049
FbaI TGATCA 1 cut(s) 940
FblI GTMKAC 2 cut(s) 2052, 2097
Fnu4HI GCNGC 8 cut(s) 209, 259, 693, 961, 1107, 1218, 2013, 2016
FokI GGATG 7 cut(s) 587, 593, 720, 1530, 1910, 2045, 2397
FriOI GRGCYC 2 cut(s) 129, 2408
Fsp4HI GCNGC 8 cut(s) 209, 259, 693, 961, 1107, 1218, 2013, 2016
FspBI CTAG 8 cut(s) 474, 1163, 1295, 1710, 1868, 2019, 2345, 2432
GlaI GCGC 3 cut(s) 1062, 1307, 1613
GluI GCNGC 8 cut(s) 209, 259, 693, 961, 1107, 1218, 2013, 2016
HaeII RGCGCY 1 cut(s) 1309
HaeIII GGCC 3 cut(s) 188, 815, 2737
HapII CCGG 1 cut(s) 216
HgaI GACGC 2 cut(s) 383, 2093
HhaI GCGC 3 cut(s) 1063, 1308, 1614
Hin1I GRCGYC 1 cut(s) 394
Hin6I GCGC 3 cut(s) 1061, 1306, 1612
HinP1I GCGC 3 cut(s) 1061, 1306, 1612
HincII GTYRAC 2 cut(s) 1186, 1416
HindII GTYRAC 2 cut(s) 1186, 1416
HindIII AAGCTT 2 cut(s) 2499, 2552
HpaII CCGG 1 cut(s) 216
HphI GGTGA 5 cut(s) 283, 319, 1223, 1367, 2522
Hpy99I CGWCG 5 cut(s) 65, 158, 161, 177, 1233
HpyAV CCTTC 8 cut(s) 308, 638, 641, 782, 1052, 2114, 2137, 2594
HpyCH4III ACNGT 9 cut(s) 325, 414, 447, 1028, 1686, 1748, 2261, 2755, 2854
HpyCH4IV ACGT 1 cut(s) 159
HpyF10VI GCNNNNNNNGC 4 cut(s) 205, 360, 391, 1106
HpyF3I CTNAG 9 cut(s) 254, 400, 492, 858, 1207, 1319, 1480, 2286, 2407
HpySE526I ACGT 1 cut(s) 159
Hsp92I GRCGYC 1 cut(s) 394
HspAI GCGC 3 cut(s) 1061, 1306, 1612
Kpn2I TCCGGA 1 cut(s) 215
Ksp22I TGATCA 1 cut(s) 940
Kzo9I GATC 9 cut(s) 91, 118, 223, 538, 940, 1643, 1649, 1978, 2837
LguI GCTCTTC 1 cut(s) 1315
LmnI GCTCC 2 cut(s) 317, 359
Lsp1109I GCAGC 6 cut(s) 679, 972, 1093, 1204, 1999, 2002
LweI GCATC 9 cut(s) 235, 478, 571, 1204, 1686, 2375, 2467, 2476, 2577
MaeI CTAG 8 cut(s) 474, 1163, 1295, 1710, 1868, 2019, 2345, 2432
MaeII ACGT 1 cut(s) 159
MaeIII GTNAC 7 cut(s) 307, 517, 823, 1037, 1713, 2447, 2518
MalI GATC 9 cut(s) 93, 120, 225, 540, 942, 1645, 1651, 1980, 2839
MboI GATC 9 cut(s) 91, 118, 223, 538, 940, 1643, 1649, 1978, 2837
MfeI CAATTG 4 cut(s) 847, 1796, 2082, 2184
MflI RGATCY 3 cut(s) 91, 1643, 2837
MhlI GDGCHC 4 cut(s) 129, 445, 958, 2408
MlyI GAGTC 2 cut(s) 1411, 2345
MmeI TCCRAC 2 cut(s) 155, 856
Mph1103I ATGCAT 2 cut(s) 1008, 1701
MroI TCCGGA 1 cut(s) 215
MroXI GAANNNNTTC 4 cut(s) 651, 1843, 2124, 2615
MseI TTAA 9 cut(s) 342, 807, 1332, 1467, 1526, 1916, 2399, 2444, 2777
MslI CAYNNNNRTG 4 cut(s) 2220, 2654, 2753, 2865
MspA1I CMGCKG 2 cut(s) 258, 2507
MspCI CTTAAG 1 cut(s) 1915
MspI CCGG 1 cut(s) 216
MspR9I CCNGG 4 cut(s) 424, 531, 1200, 1584
MunI CAATTG 4 cut(s) 847, 1796, 2082, 2184
Mva1269I GAATGC 1 cut(s) 1008
MvaI CCWGG 4 cut(s) 424, 531, 1200, 1584
MvnI CGCG 2 cut(s) 165, 2199
MwoI GCNNNNNNNGC 4 cut(s) 205, 360, 391, 1106
NcoI CCATGG 1 cut(s) 1179
NdeI CATATG 1 cut(s) 1049
NdeII GATC 9 cut(s) 91, 118, 223, 538, 940, 1643, 1649, 1978, 2837
NlaIV GGNNCC 2 cut(s) 609, 1245
NmeAIII GCCGAG 1 cut(s) 370
NmuCI GTSAC 5 cut(s) 307, 517, 823, 1037, 2518
NsiI ATGCAT 2 cut(s) 1008, 1701
NspI RCATGY 2 cut(s) 1612, 1703
OliI CACNNNNGTG 1 cut(s) 2753
PaeI GCATGC 1 cut(s) 1612
PagI TCATGA 2 cut(s) 2215, 2275
PaqCI CACCTGC 1 cut(s) 1386
PasI CCCWGGG 1 cut(s) 423
PciSI GCTCTTC 1 cut(s) 1315
PcsI WCGNNNNNNNCGW 3 cut(s) 162, 169, 628
PctI GAATGC 1 cut(s) 1008
PdmI GAANNNNTTC 4 cut(s) 651, 1843, 2124, 2615
Pfl23II CGTACG 1 cut(s) 160
PfoI TCCNGGA 2 cut(s) 1198, 1582
PkrI GCNGC 8 cut(s) 210, 260, 694, 962, 1108, 1219, 2014, 2017
PleI GAGTC 2 cut(s) 1411, 2344
PpsI GAGTC 2 cut(s) 1411, 2344
PpuMI RGGWCCY 1 cut(s) 2191
PsiI TTATAA 2 cut(s) 1440, 2325
Psp124BI GAGCTC 2 cut(s) 129, 2408
Psp5II RGGWCCY 1 cut(s) 2191
Psp6I CCWGG 4 cut(s) 422, 529, 1198, 1582
PspGI CCWGG 4 cut(s) 422, 529, 1198, 1582
PspLI CGTACG 1 cut(s) 160
PspN4I GGNNCC 2 cut(s) 609, 1245
PspPI GGNCC 5 cut(s) 187, 607, 1783, 2191, 2736
PspPPI RGGWCCY 1 cut(s) 2191
PstNI CAGNNNCTG 1 cut(s) 1780
PsuI RGATCY 3 cut(s) 91, 1643, 2837
PvuII CAGCTG 1 cut(s) 2507
RsaI GTAC 6 cut(s) 162, 913, 1012, 2074, 2293, 2481
RsaNI GTAC 6 cut(s) 161, 912, 1011, 2073, 2292, 2480
RseI CAYNNNNRTG 4 cut(s) 2220, 2654, 2753, 2865
SacI GAGCTC 2 cut(s) 129, 2408
SapI GCTCTTC 1 cut(s) 1315
SaqAI TTAA 9 cut(s) 342, 807, 1332, 1467, 1526, 1916, 2399, 2444, 2777
SatI GCNGC 8 cut(s) 209, 259, 693, 961, 1107, 1218, 2013, 2016
Sau3AI GATC 9 cut(s) 91, 118, 223, 538, 940, 1643, 1649, 1978, 2837
Sau96I GGNCC 5 cut(s) 187, 607, 1783, 2191, 2736
ScaI AGTACT 1 cut(s) 2074
SchI GAGTC 2 cut(s) 1411, 2345
ScrFI CCNGG 4 cut(s) 424, 531, 1200, 1584
SduI GDGCHC 4 cut(s) 129, 445, 958, 2408
SfaNI GCATC 9 cut(s) 235, 478, 571, 1204, 1686, 2375, 2467, 2476, 2577
SfcI CTRYAG 1 cut(s) 2562
SinI GGWCC 3 cut(s) 607, 1783, 2191
SmiMI CAYNNNNRTG 4 cut(s) 2220, 2654, 2753, 2865
SmlI CTYRAG 2 cut(s) 1301, 1915
SmoI CTYRAG 2 cut(s) 1301, 1915
SpeI ACTAGT 1 cut(s) 1867
SphI GCATGC 1 cut(s) 1612
SspI AATATT 3 cut(s) 688, 1506, 2614
SspMI CTAG 8 cut(s) 474, 1163, 1295, 1710, 1868, 2019, 2345, 2432
SstI GAGCTC 2 cut(s) 129, 2408
StyD4I CCNGG 4 cut(s) 422, 529, 1198, 1582
StyI CCWWGG 3 cut(s) 183, 781, 1179
TaaI ACNGT 9 cut(s) 325, 414, 447, 1028, 1686, 1748, 2261, 2755, 2854
TaiI ACGT 1 cut(s) 162
TaqI TCGA 8 cut(s) 129, 226, 233, 243, 631, 1804, 1963, 2693
TatI WGTACW 3 cut(s) 1010, 2072, 2291
TauI GCSGC 2 cut(s) 211, 261
Tru1I TTAA 9 cut(s) 342, 807, 1332, 1467, 1526, 1916, 2399, 2444, 2777
Tru9I TTAA 9 cut(s) 342, 807, 1332, 1467, 1526, 1916, 2399, 2444, 2777
TscAI CASTG 5 cut(s) 1033, 1327, 1785, 2338, 2758
TseFI GTSAC 5 cut(s) 307, 517, 823, 1037, 2518
TseI GCWGC 6 cut(s) 692, 960, 1106, 1217, 2012, 2015
Tsp45I GTSAC 5 cut(s) 307, 517, 823, 1037, 2518
TspDTI ATGAA 6 cut(s) 423, 649, 1104, 1914, 2204, 2264
TspGWI ACGGA 2 cut(s) 326, 1851
TspRI CASTG 5 cut(s) 1033, 1327, 1785, 2338, 2758
Vha464I CTTAAG 1 cut(s) 1915
VneI GTGCAC 1 cut(s) 441
VpaK11BI GGWCC 3 cut(s) 607, 1783, 2191
XapI RAATTY 1 cut(s) 1901
XbaI TCTAGA 1 cut(s) 2431
XceI RCATGY 2 cut(s) 1612, 1703
XcmI CCANNNNNNNNNTGG 2 cut(s) 788, 2504
XmiI GTMKAC 2 cut(s) 2052, 2097
XmnI GAANNNNTTC 4 cut(s) 651, 1843, 2124, 2615
XspI CTAG 8 cut(s) 474, 1163, 1295, 1710, 1868, 2019, 2345, 2432
ZrmI AGTACT 1 cut(s) 2074
Zsp2I ATGCAT 2 cut(s) 1008, 1701
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.