RLG00000014668

DNA repair and recombination protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0008727
Physical Location & Seq
Reverse (-)
56002256 .. 56010844
8589 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014668

Sequence Viewer

Length: 2874 bp
ATGGAAGACGAAGAAGAAGTCATCTCACTCTCCGATTCCTCCTCTGATTCCAGTTCCAGCGACGACTACACGGCTGACCCACAAGACTTGGATCTCGGAGAAGAAGAAGAAGACCAACAGCTCGAAAACGAACCAGAGGTTCAAAACGACGACGTACGCGAGAATCCTCGGAGACCCAAGTCCCGCCCTCCGCCTCCTTCGCCGCCGTCCGGAAAAGATCGGAAATCGAAGAATGTCGATGCTCTCCTCAGCGGCAACCTTGTGGTGAAAAGACAGCCTCTTCTTCCACGAGTTCTGTCGGTGACGGAAGGAGCAACAGTTTGTAGGAAACCCTTTAAACCACCATGCTCCAAAGGCTATGATGATGGAAATGACCAGCTCGCTCGGCGTCTCTCAGCACGCAGACGGTTTGTACCCTGGGGCGGTTCATCAAGTGCACCATTTATTCCAGTTTTTGAGAGGTTTTCTAGTTTGCCAAATGATGCTGAGAAAGATGTAGTGGAAGAGAGTGTAACCCTGCCACCTGGAATTGATCCTTTGGTCTTGTGGCAACCTGAAGAATTCGAGGATGGGGATGCTAATATGGTGCAGATAGTAGTGGACCCTCTGCTCGTTCGTTTCCTTCGACCACATCAAAGAGAAGGGGTTCAATTCATGTTTGATTGTGTTGCGGGCATAAATAGTGCTGCAAATATACATGGATGTATTCTTGCAGATGATATGGGGTTGGGAAAGACATTGCAGTCAATCACATTACTTTATACCCTTCTTTACCAAGGGTTTGATGGGAAATCAATGGTTAAAAAGGCCATTATAGTCACTCCCACCAGTCTTGTGAGCAATTGGGAGGCTGAGATAAAGAAGTGGGTCGGAGACAGAGTTTGCCTCATTGCTCTGTGTGAAAGTACCAGAGATGATGTTGTTTCTGGAATTGATCAGTTCACAAGTGCTCACAGCCGTTTGCAGGTTCTAATTGTTTCTTACGAAACATTCCGAATGCATTGTACAAAGTTTAGCCACAGTGAATCGTGTGACCTTCTCATATGTGATGAGGCTCACAGGCTAAAGAATGACCAAACGATGACGAATAGGGCATTGGCTGCTCTTTCATGCAAGCGGAGGATTTTGTTGTCAGGAACTCCAATGCAGAATGACCTAGAAGAGTTCTTTGCCATGGTCAACTTCACTAATCCAGGAATCTTAGGTGACGCTGCACATTTTCGTCGCTACTATGAGGCACCTATTATTTGTGGAAGAGAACCTAATGCCTGTGAAGAAGAGAGGAAACTAGGTCTTGAGCGCTCTTCAGAACTCAGTGCAAAAGTTAATCAGTTTATACTGCGGAGGACTAATGCACTACTTTCAAATCACCTGCCACCAAAGATAATTGAAGTTGTCTGTTGCAAGTTGACTCCTCTCCAATTGGACCTTTATAACCATTTTATACATTCCAAAAATGTTAAACGAGCAATCTCAGAAGACACAAAGCAAACAAAAATATTAGCTTATATAACTGCTTTAAAGAAGCTATGCAATCATCCAAAGCTCATCTATGATACTATAAAAAGTGGAAGTCCAGGAACTTCAGGTTTTGAGGACTGCATTCGCTTTTTCCCTCCACAGATGTTCTCTGGAAGATCTGGATCATGGACTGGCGGAGATGGGGCTTGGGTTGAACTGTCAGGAAAGATGCATGTTTTAGCTAGGTTACTTGCCCAATTACGAAAGAAGACTGATGACCGTATTGTCCTTGTCTCAAACTATACGCAGACACTGGACCTTTTTGCCCAATTGTGTCGAGAAAGAAGATACCCATATTTGAGGCTTGATGGAACAACTTCTATCAGTAAAAGACAGAAATTAGTAAACCAATTCAATGACCCCTCAAAGGATGAATTTGCATTTCTCTTAAGCAGTAAGGCTGGTGGCTGTGGTCTCAATTTGATAGGCGGAAATCGACTGGTGTTGTTTGATCCTGATTGGAATCCAGCCAATGATAAACAAGCTGCTGCTAGAGTTTGGAGGGATGGGCAAAAGAAGAGAGTATACATTTATAGATTTTTGAGTACTGGAACAATTGAAGAAAAGGTCTACCAGCGTCAGATGTCAAAAGAAGGGCTTCAAAAAGTTATTCAGAAGGAACAAGCCGATAGCCCGATGGCACAGGGGAATCTTTCAATTGAGGACCTACGTGATTTGTTCACATTTCATGAGAATGTGAGGTCTGATGTGCATGAGAAGATGAACTGCAACCGTTGTCAAACTTATCATGATACACCTCAGAGTACAGCAGAGGGAGATATAAACCAATCAACTTATAAAAGCAGTGAGTCTGCACCAGAAATCTCTGATATAGGTGGATTTGCAGAAATTACTGGATGCTTACAGAAGTTAAAGAGCTCAGAAAAGCAGGTCGGGACTCCTCTAGAGGAAGATTTAAGTAACTGGGGGCATCATTTCTTCTCCACTTCAGTACCCGATGCTATTCTCCAAGCTTCAGCTGGTGATGAGGTCACTTTTGTTTTTACAAACCAAGTGGACGGGAAGCTTGTGCCTATAGAATCAAAAGCAAGCCCACAGATGCAGGGAGAAGAAGGAAAAGAGAATATTTTCAAATCAAAGCAAGACCTGAATCAGAAATCCATGCTAATGTCTTGGCAAAGAAAACCACTTGAATCTCTTTCTTCGAGTGTAAATACTGCCAGAAGCACATTATCAGCCCCTTTCAGGCCCTCACAAAACACCACTGTGAAATCAGGGATAACCTCTTTAAAGGGGTCAGTAGCATTGAAGCCTAAACTCTCTCTTGGAAATCGGTTGCCCCAGAAAAGATCTTCTCCTGATACTGTTGAACATGATGATGATTTTCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000018 GO:0000280 GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006311 GO:0006325 GO:0006338 GO:0006342 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010035 GO:0010038 GO:0010212 GO:0010332 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015616 GO:0016043 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0022402 GO:0022414 GO:0030491 GO:0030702 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0033170 GO:0033554 GO:0034641 GO:0035822 GO:0035825 GO:0035861 GO:0040029 GO:0042221 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045003 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048285 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051321 GO:0051701 GO:0051704 GO:0051716 GO:0060255 GO:0061806 GO:0061982 GO:0065007 GO:0070887 GO:0071214 GO:0071241 GO:0071248 GO:0071478 GO:0071479 GO:0071480 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090734 GO:0097159 GO:0104004 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1902679 GO:1903046 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03440 map03440
Pfam Domains
Protein Families
Helicase_C SNF2_N

Protein Analysis

958

Amino Acids

107.08

Weight (kDa)

6.01

Isoelectric Point (pI)

49.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ResIII PF04851 208 - 381 5.9e-09 Type III restriction enzyme, res subunit
SNF2-rel_dom PF00176 211 - 516 5.8e-71 SNF2-related domain
DEAD PF00270 233 - 388 1.6e-08 DEAD/DEAH box helicase
Helicase_C PF00271 563 - 677 1.5e-20 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1434, 2319
AarI CACCTGC 1 cut(s) 1380
AasI GACNNNNNNGTC 2 cut(s) 742, 1745
Acc36I ACCTGC 3 cut(s) 955, 1380, 2401
AccB1I GGYRCC 1 cut(s) 1237
AccI GTMKAC 2 cut(s) 2046, 2091
AccII CGCG 1 cut(s) 159
AccIII TCCGGA 1 cut(s) 209
AclWI GGATC 4 cut(s) 99, 527, 1651, 1967
AcsI RAATTY 2 cut(s) 560, 1895
AcuI CTGAAG 5 cut(s) 576, 1290, 1569, 2454, 2481
AcyI GRCGYC 1 cut(s) 388
AfaI GTAC 7 cut(s) 156, 414, 907, 1006, 2068, 2287, 2475
AfeI AGCGCT 1 cut(s) 1301
AfiI CCNNNNNNNGG 5 cut(s) 209, 422, 964, 1888, 2727
AflII CTTAAG 1 cut(s) 1909
AjnI CCWGG 4 cut(s) 416, 523, 1192, 1576
AjuI GAANNNNNNNTTGG 2 cut(s) 1079, 1111
AleI CACNNNNGTG 1 cut(s) 2747
Alw21I GWGCWC 3 cut(s) 439, 952, 2402
Alw26I GTCTC 5 cut(s) 166, 395, 867, 1759, 1940
Alw44I GTGCAC 1 cut(s) 435
AlwI GGATC 4 cut(s) 99, 527, 1651, 1967
AlwNI CAGNNNCTG 1 cut(s) 1774
Aor13HI TCCGGA 1 cut(s) 209
Aor51HI AGCGCT 1 cut(s) 1301
AoxI GGCC 2 cut(s) 807, 2729
ApaLI GTGCAC 1 cut(s) 435
ApeKI GCWGC 5 cut(s) 686, 1100, 1211, 2006, 2009
ApoI RAATTY 2 cut(s) 560, 1895
ArsI GACNNNNNNTTYG 1 cut(s) 35
Asp700I GAANNNNTTC 4 cut(s) 645, 1837, 2118, 2609
AspLEI GCGC 1 cut(s) 1302
AspS9I GGNCC 5 cut(s) 601, 1426, 1777, 2185, 2730
AsuHPI GGTGA 5 cut(s) 277, 313, 1217, 1361, 2516
AvaII GGWCC 4 cut(s) 601, 1426, 1777, 2185
BaeGI GKGCMC 1 cut(s) 439
BaeI ACNNNNGTAYC 2 cut(s) 2457, 2490
BanI GGYRCC 1 cut(s) 1237
BanII GRGCYC 1 cut(s) 2402
BarI GAAGNNNNNNTAC 2 cut(s) 2030, 2062
BauI CACGAG 1 cut(s) 288
BbsI GAAGAC 4 cut(s) 12, 117, 1485, 1736
Bbv12I GWGCWC 3 cut(s) 439, 952, 2402
BbvCI CCTCAGC 1 cut(s) 248
BbvI GCAGC 5 cut(s) 673, 1087, 1198, 1993, 1996
BccI CCATC 7 cut(s) 359, 563, 779, 1655, 1823, 2021, 2152
BceAI ACGGC 3 cut(s) 87, 190, 942
BciT130I CCWGG 4 cut(s) 418, 525, 1194, 1578
BclI TGATCA 1 cut(s) 934
BcoDI GTCTC 5 cut(s) 166, 395, 867, 1759, 1940
BfaI CTAG 6 cut(s) 468, 1157, 1289, 1704, 2013, 2426
BfmI CTRYAG 1 cut(s) 2556
BfoI RGCGCY 1 cut(s) 1303
BfrI CTTAAG 1 cut(s) 1909
BfuAI ACCTGC 3 cut(s) 955, 1380, 2401
BglII AGATCT 2 cut(s) 1637, 2831
BisI GCNGC 7 cut(s) 203, 253, 687, 1101, 1212, 2007, 2010
BlsI GCNGC 7 cut(s) 204, 254, 688, 1102, 1213, 2008, 2011
BmcAI AGTACT 1 cut(s) 2068
Bme1390I CCNGG 4 cut(s) 418, 525, 1194, 1578
Bme18I GGWCC 4 cut(s) 601, 1426, 1777, 2185
BmgT120I GGNCC 5 cut(s) 601, 1426, 1777, 2185, 2730
BmiI GGNNCC 2 cut(s) 603, 1239
BmrFI CCNGG 4 cut(s) 418, 525, 1194, 1578
BmrI ACTGGG 1 cut(s) 2455
BmsI GCATC 8 cut(s) 229, 472, 565, 1680, 2369, 2461, 2470, 2571
BmuI ACTGGG 1 cut(s) 2455
BoxI GACNNNNGTC 1 cut(s) 178
BpiI GAAGAC 4 cut(s) 12, 117, 1485, 1736
BplI GAGNNNNNCTC 2 cut(s) 870, 902
Bpu10I CCTNAGC 1 cut(s) 248
BpuEI CTTGAG 1 cut(s) 1316
BsaAI YACGTR 1 cut(s) 2192
BsaBI GATNNNNATC 2 cut(s) 1642, 1983
BsaHI GRCGYC 1 cut(s) 388
BsaI GGTCTC 2 cut(s) 166, 1940
BsaJI CCNNGG 5 cut(s) 167, 416, 417, 775, 1173
BsaWI WCCGGW 1 cut(s) 209
BsaXI ACNNNNNCTCC 4 cut(s) 303, 333, 864, 894
Bsc4I CCNNNNNNNGG 5 cut(s) 209, 422, 964, 1888, 2727
Bse1I ACTGG 9 cut(s) 51, 449, 828, 1657, 1779, 1965, 2074, 2380, 2450
Bse3DI GCAATG 2 cut(s) 737, 888
Bse8I GATNNNNATC 2 cut(s) 1642, 1983
BseAI TCCGGA 1 cut(s) 209
BseBI CCWGG 4 cut(s) 418, 525, 1194, 1578
BseDI CCNNGG 5 cut(s) 167, 416, 417, 775, 1173
BseGI GGATG 7 cut(s) 574, 580, 707, 1537, 1897, 2032, 2384
BseJI GATNNNNATC 2 cut(s) 1642, 1983
BseLI CCNNNNNNNGG 5 cut(s) 209, 422, 964, 1888, 2727
BseMI GCAATG 2 cut(s) 737, 888
BseMII CTCAG 8 cut(s) 262, 408, 477, 843, 1327, 1488, 2294, 2415
BseNI ACTGG 9 cut(s) 51, 449, 828, 1657, 1779, 1965, 2074, 2380, 2450
BseRI GAGGAG 4 cut(s) 31, 236, 1404, 2412
BseSI GKGCMC 1 cut(s) 439
BseXI GCAGC 5 cut(s) 673, 1087, 1198, 1993, 1996
BsgI GTGCAG 3 cut(s) 608, 1197, 2319
Bsh1236I CGCG 1 cut(s) 159
BshFI GGCC 2 cut(s) 809, 2731
BshNI GGYRCC 1 cut(s) 1237
BsiHKAI GWGCWC 3 cut(s) 439, 952, 2402
BsiSI CCGG 1 cut(s) 210
BsiWI CGTACG 1 cut(s) 154
BslFI GGGAC 2 cut(s) 166, 2431
BslI CCNNNNNNNGG 5 cut(s) 209, 422, 964, 1888, 2727
BsmAI GTCTC 5 cut(s) 166, 395, 867, 1759, 1940
BsmBI CGTCTC 1 cut(s) 395
BsmFI GGGAC 2 cut(s) 166, 2431
BsmI GAATGC 2 cut(s) 1002, 1602
BsnI GGCC 2 cut(s) 809, 2731
Bso31I GGTCTC 2 cut(s) 166, 1940
Bsp1286I GDGCHC 3 cut(s) 439, 952, 2402
Bsp13I TCCGGA 1 cut(s) 209
Bsp1407I TGTACA 1 cut(s) 1004
Bsp143I GATC 8 cut(s) 91, 217, 532, 934, 1637, 1643, 1972, 2831
Bsp19I CCATGG 1 cut(s) 1173
BspANI GGCC 2 cut(s) 809, 2731
BspCNI CTCAG 8 cut(s) 261, 407, 478, 844, 1326, 1487, 2293, 2414
BspEI TCCGGA 1 cut(s) 209
BspFNI CGCG 1 cut(s) 159
BspHI TCATGA 2 cut(s) 2209, 2269
BspLI GGNNCC 2 cut(s) 603, 1239
BspMI ACCTGC 3 cut(s) 955, 1380, 2401
BspPI GGATC 4 cut(s) 99, 527, 1651, 1967
BspQI GCTCTTC 1 cut(s) 1309
BspT107I GGYRCC 1 cut(s) 1237
BspTI CTTAAG 1 cut(s) 1909
BspTNI GGTCTC 2 cut(s) 166, 1940
BsrDI GCAATG 2 cut(s) 737, 888
BsrGI TGTACA 1 cut(s) 1004
BsrI ACTGG 9 cut(s) 51, 449, 828, 1657, 1779, 1965, 2074, 2380, 2450
BssECI CCNNGG 5 cut(s) 167, 416, 417, 775, 1173
BssMI GATC 8 cut(s) 91, 217, 532, 934, 1637, 1643, 1972, 2831
BssNAI GTATAC 1 cut(s) 2047
BssNI GRCGYC 1 cut(s) 388
BssSI CACGAG 1 cut(s) 288
BssT1I CCWWGG 2 cut(s) 775, 1173
Bst1107I GTATAC 1 cut(s) 2047
Bst2BI CACGAG 1 cut(s) 288
Bst2UI CCWGG 4 cut(s) 418, 525, 1194, 1578
Bst4CI ACNGT 8 cut(s) 319, 408, 1022, 1680, 1742, 2255, 2749, 2848
Bst6I CTCTTC 7 cut(s) 285, 498, 1155, 1249, 1272, 1309, 2033
BstACI GRCGYC 1 cut(s) 388
BstAFI CTTAAG 1 cut(s) 1909
BstAPI GCANNNNNTGC 1 cut(s) 1100
BstAUI TGTACA 1 cut(s) 1004
BstBAI YACGTR 1 cut(s) 2192
BstC8I GCNNGC 5 cut(s) 381, 400, 673, 1115, 2572
BstDEI CTNAG 9 cut(s) 248, 394, 486, 852, 1201, 1313, 1474, 2280, 2401
BstDSI CCRYGG 1 cut(s) 1173
BstF5I GGATG 7 cut(s) 574, 580, 707, 1537, 1897, 2032, 2384
BstFNI CGCG 1 cut(s) 159
BstH2I RGCGCY 1 cut(s) 1303
BstHHI GCGC 1 cut(s) 1302
BstKTI GATC 8 cut(s) 94, 220, 535, 937, 1640, 1646, 1975, 2834
BstMAI GTCTC 5 cut(s) 166, 395, 867, 1759, 1940
BstMBI GATC 8 cut(s) 91, 217, 532, 934, 1637, 1643, 1972, 2831
BstMWI GCNNNNNNNGC 4 cut(s) 199, 354, 385, 1100
BstNI CCWGG 4 cut(s) 418, 525, 1194, 1578
BstNSI RCATGY 1 cut(s) 1697
BstPAI GACNNNNGTC 1 cut(s) 178
BstSCI CCNGG 4 cut(s) 416, 523, 1192, 1576
BstSFI CTRYAG 1 cut(s) 2556
BstSLI GKGCMC 1 cut(s) 439
BstUI CGCG 1 cut(s) 159
BstV1I GCAGC 5 cut(s) 673, 1087, 1198, 1993, 1996
BstV2I GAAGAC 4 cut(s) 12, 117, 1485, 1736
BstX2I RGATCY 3 cut(s) 91, 1637, 2831
BstYI RGATCY 3 cut(s) 91, 1637, 2831
BstZ17I GTATAC 1 cut(s) 2047
BsuRI GGCC 2 cut(s) 809, 2731
BtgI CCRYGG 1 cut(s) 1173
BtsCI GGATG 7 cut(s) 574, 580, 707, 1537, 1897, 2032, 2384
BtsI GCAGTG 1 cut(s) 2332
BtsIMutI CAGTG 5 cut(s) 1027, 1321, 1772, 2332, 2745
BveI ACCTGC 3 cut(s) 955, 1380, 2401
Cac8I GCNNGC 5 cut(s) 381, 400, 673, 1115, 2572
CaiI CAGNNNCTG 1 cut(s) 1774
CciI TCATGA 2 cut(s) 2209, 2269
CfoI GCGC 1 cut(s) 1302
Cfr13I GGNCC 5 cut(s) 601, 1426, 1777, 2185, 2730
CseI GACGC 3 cut(s) 377, 1217, 2087
Csp6I GTAC 7 cut(s) 155, 413, 906, 1005, 2067, 2286, 2474
CspCI CAANNNNNGTGG 6 cut(s) 69, 104, 814, 849, 2517, 2552
CviQI GTAC 7 cut(s) 155, 413, 906, 1005, 2067, 2286, 2474
DdeI CTNAG 9 cut(s) 248, 394, 486, 852, 1201, 1313, 1474, 2280, 2401
DpnI GATC 8 cut(s) 93, 219, 534, 936, 1639, 1645, 1974, 2833
DpnII GATC 8 cut(s) 91, 217, 532, 934, 1637, 1643, 1972, 2831
DraI TTTAAA 3 cut(s) 337, 1521, 2772
DrdI GACNNNNNNGTC 2 cut(s) 742, 1745
DseDI GACNNNNNNGTC 2 cut(s) 742, 1745
Eam1104I CTCTTC 7 cut(s) 285, 498, 1155, 1249, 1272, 1309, 2033
EarI CTCTTC 7 cut(s) 285, 498, 1155, 1249, 1272, 1309, 2033
EciI GGCGGA 3 cut(s) 180, 1671, 1965
Ecl136II GAGCTC 1 cut(s) 2400
Eco130I CCWWGG 2 cut(s) 775, 1173
Eco24I GRGCYC 1 cut(s) 2402
Eco31I GGTCTC 2 cut(s) 166, 1940
Eco47I GGWCC 4 cut(s) 601, 1426, 1777, 2185
Eco47III AGCGCT 1 cut(s) 1301
Eco53kI GAGCTC 1 cut(s) 2400
Eco57I CTGAAG 5 cut(s) 576, 1290, 1569, 2454, 2481
EcoICRI GAGCTC 1 cut(s) 2400
EcoO109I RGGNCCY 2 cut(s) 2185, 2730
EcoRI GAATTC 1 cut(s) 560
EcoRII CCWGG 4 cut(s) 416, 523, 1192, 1576
EcoT14I CCWWGG 2 cut(s) 775, 1173
EcoT22I ATGCAT 2 cut(s) 1002, 1695
EcoT38I GRGCYC 1 cut(s) 2402
ErhI CCWWGG 2 cut(s) 775, 1173
Esp3I CGTCTC 1 cut(s) 395
FalI AAGNNNNNCTT 2 cut(s) 2103, 2135
FaqI GGGAC 2 cut(s) 166, 2431
FauI CCCGC 2 cut(s) 191, 664
FauNDI CATATG 1 cut(s) 1043
FbaI TGATCA 1 cut(s) 934
FblI GTMKAC 2 cut(s) 2046, 2091
Fnu4HI GCNGC 7 cut(s) 203, 253, 687, 1101, 1212, 2007, 2010
FokI GGATG 7 cut(s) 581, 587, 714, 1524, 1904, 2039, 2391
FriOI GRGCYC 1 cut(s) 2402
Fsp4HI GCNGC 7 cut(s) 203, 253, 687, 1101, 1212, 2007, 2010
FspBI CTAG 6 cut(s) 468, 1157, 1289, 1704, 2013, 2426
GlaI GCGC 1 cut(s) 1301
GluI GCNGC 7 cut(s) 203, 253, 687, 1101, 1212, 2007, 2010
HaeII RGCGCY 1 cut(s) 1303
HaeIII GGCC 2 cut(s) 809, 2731
HapII CCGG 1 cut(s) 210
HgaI GACGC 3 cut(s) 377, 1217, 2087
HhaI GCGC 1 cut(s) 1302
Hin1I GRCGYC 1 cut(s) 388
Hin6I GCGC 1 cut(s) 1300
HinP1I GCGC 1 cut(s) 1300
HincII GTYRAC 2 cut(s) 1180, 1410
HindII GTYRAC 2 cut(s) 1180, 1410
HindIII AAGCTT 2 cut(s) 2493, 2546
HpaII CCGG 1 cut(s) 210
HphI GGTGA 5 cut(s) 277, 313, 1217, 1361, 2516
Hpy99I CGWCG 4 cut(s) 65, 152, 155, 1227
HpyAV CCTTC 9 cut(s) 207, 302, 632, 635, 776, 1046, 2108, 2131, 2588
HpyCH4III ACNGT 8 cut(s) 319, 408, 1022, 1680, 1742, 2255, 2749, 2848
HpyCH4IV ACGT 2 cut(s) 153, 2191
HpyF10VI GCNNNNNNNGC 4 cut(s) 199, 354, 385, 1100
HpyF3I CTNAG 9 cut(s) 248, 394, 486, 852, 1201, 1313, 1474, 2280, 2401
HpySE526I ACGT 2 cut(s) 153, 2191
Hsp92I GRCGYC 1 cut(s) 388
HspAI GCGC 1 cut(s) 1300
Kpn2I TCCGGA 1 cut(s) 209
Ksp22I TGATCA 1 cut(s) 934
Kzo9I GATC 8 cut(s) 91, 217, 532, 934, 1637, 1643, 1972, 2831
LguI GCTCTTC 1 cut(s) 1309
LmnI GCTCC 2 cut(s) 311, 353
Lsp1109I GCAGC 5 cut(s) 673, 1087, 1198, 1993, 1996
LweI GCATC 8 cut(s) 229, 472, 565, 1680, 2369, 2461, 2470, 2571
MaeI CTAG 6 cut(s) 468, 1157, 1289, 1704, 2013, 2426
MaeII ACGT 2 cut(s) 153, 2191
MaeIII GTNAC 8 cut(s) 301, 511, 817, 1031, 1205, 1707, 2441, 2512
MalI GATC 8 cut(s) 93, 219, 534, 936, 1639, 1645, 1974, 2833
MboI GATC 8 cut(s) 91, 217, 532, 934, 1637, 1643, 1972, 2831
MfeI CAATTG 5 cut(s) 841, 1421, 1790, 2076, 2178
MflI RGATCY 3 cut(s) 91, 1637, 2831
MhlI GDGCHC 3 cut(s) 439, 952, 2402
MlyI GAGTC 3 cut(s) 1405, 2339, 2413
MmeI TCCRAC 1 cut(s) 850
Mph1103I ATGCAT 2 cut(s) 1002, 1695
MroI TCCGGA 1 cut(s) 209
MroXI GAANNNNTTC 4 cut(s) 645, 1837, 2118, 2609
MseI TTAA 9 cut(s) 336, 801, 1326, 1461, 1520, 1910, 2393, 2438, 2771
MslI CAYNNNNRTG 4 cut(s) 2214, 2648, 2747, 2859
MspA1I CMGCKG 2 cut(s) 252, 2501
MspCI CTTAAG 1 cut(s) 1909
MspI CCGG 1 cut(s) 210
MspR9I CCNGG 4 cut(s) 418, 525, 1194, 1578
MunI CAATTG 5 cut(s) 841, 1421, 1790, 2076, 2178
Mva1269I GAATGC 2 cut(s) 1002, 1602
MvaI CCWGG 4 cut(s) 418, 525, 1194, 1578
MvnI CGCG 1 cut(s) 159
MwoI GCNNNNNNNGC 4 cut(s) 199, 354, 385, 1100
NcoI CCATGG 1 cut(s) 1173
NdeI CATATG 1 cut(s) 1043
NdeII GATC 8 cut(s) 91, 217, 532, 934, 1637, 1643, 1972, 2831
NlaIV GGNNCC 2 cut(s) 603, 1239
NmeAIII GCCGAG 1 cut(s) 364
NmuCI GTSAC 5 cut(s) 301, 817, 1031, 1205, 2512
NsiI ATGCAT 2 cut(s) 1002, 1695
NspI RCATGY 1 cut(s) 1697
OliI CACNNNNGTG 1 cut(s) 2747
PagI TCATGA 2 cut(s) 2209, 2269
PaqCI CACCTGC 1 cut(s) 1380
PasI CCCWGGG 1 cut(s) 417
PciSI GCTCTTC 1 cut(s) 1309
PcsI WCGNNNNNNNCGW 2 cut(s) 156, 622
PctI GAATGC 2 cut(s) 1002, 1602
PdmI GAANNNNTTC 4 cut(s) 645, 1837, 2118, 2609
Pfl23II CGTACG 1 cut(s) 154
PfoI TCCNGGA 2 cut(s) 1192, 1576
PkrI GCNGC 7 cut(s) 204, 254, 688, 1102, 1213, 2008, 2011
PleI GAGTC 3 cut(s) 1405, 2338, 2413
PpsI GAGTC 3 cut(s) 1405, 2338, 2413
Ppu21I YACGTR 1 cut(s) 2192
PpuMI RGGWCCY 1 cut(s) 2185
PshAI GACNNNNGTC 1 cut(s) 178
PsiI TTATAA 2 cut(s) 1434, 2319
Psp124BI GAGCTC 1 cut(s) 2402
Psp5II RGGWCCY 1 cut(s) 2185
Psp6I CCWGG 4 cut(s) 416, 523, 1192, 1576
PspGI CCWGG 4 cut(s) 416, 523, 1192, 1576
PspLI CGTACG 1 cut(s) 154
PspN4I GGNNCC 2 cut(s) 603, 1239
PspPI GGNCC 5 cut(s) 601, 1426, 1777, 2185, 2730
PspPPI RGGWCCY 1 cut(s) 2185
PstNI CAGNNNCTG 1 cut(s) 1774
PsuI RGATCY 3 cut(s) 91, 1637, 2831
PvuII CAGCTG 1 cut(s) 2501
RsaI GTAC 7 cut(s) 156, 414, 907, 1006, 2068, 2287, 2475
RsaNI GTAC 7 cut(s) 155, 413, 906, 1005, 2067, 2286, 2474
RseI CAYNNNNRTG 4 cut(s) 2214, 2648, 2747, 2859
SacI GAGCTC 1 cut(s) 2402
SapI GCTCTTC 1 cut(s) 1309
SaqAI TTAA 9 cut(s) 336, 801, 1326, 1461, 1520, 1910, 2393, 2438, 2771
SatI GCNGC 7 cut(s) 203, 253, 687, 1101, 1212, 2007, 2010
Sau3AI GATC 8 cut(s) 91, 217, 532, 934, 1637, 1643, 1972, 2831
Sau96I GGNCC 5 cut(s) 601, 1426, 1777, 2185, 2730
ScaI AGTACT 1 cut(s) 2068
SchI GAGTC 3 cut(s) 1405, 2339, 2413
ScrFI CCNGG 4 cut(s) 418, 525, 1194, 1578
SduI GDGCHC 3 cut(s) 439, 952, 2402
SfaNI GCATC 8 cut(s) 229, 472, 565, 1680, 2369, 2461, 2470, 2571
SfcI CTRYAG 1 cut(s) 2556
SinI GGWCC 4 cut(s) 601, 1426, 1777, 2185
SmiMI CAYNNNNRTG 4 cut(s) 2214, 2648, 2747, 2859
SmlI CTYRAG 2 cut(s) 1295, 1909
SmoI CTYRAG 2 cut(s) 1295, 1909
SspI AATATT 2 cut(s) 1500, 2608
SspMI CTAG 6 cut(s) 468, 1157, 1289, 1704, 2013, 2426
SstI GAGCTC 1 cut(s) 2402
StyD4I CCNGG 4 cut(s) 416, 523, 1192, 1576
StyI CCWWGG 2 cut(s) 775, 1173
TaaI ACNGT 8 cut(s) 319, 408, 1022, 1680, 1742, 2255, 2749, 2848
TaiI ACGT 2 cut(s) 156, 2194
TaqI TCGA 8 cut(s) 123, 227, 237, 564, 625, 1798, 1957, 2687
TatI WGTACW 3 cut(s) 1004, 2066, 2285
TauI GCSGC 2 cut(s) 205, 255
Tru1I TTAA 9 cut(s) 336, 801, 1326, 1461, 1520, 1910, 2393, 2438, 2771
Tru9I TTAA 9 cut(s) 336, 801, 1326, 1461, 1520, 1910, 2393, 2438, 2771
TscAI CASTG 5 cut(s) 1027, 1321, 1779, 2332, 2752
TseFI GTSAC 5 cut(s) 301, 817, 1031, 1205, 2512
TseI GCWGC 5 cut(s) 686, 1100, 1211, 2006, 2009
Tsp45I GTSAC 5 cut(s) 301, 817, 1031, 1205, 2512
TspDTI ATGAA 6 cut(s) 417, 643, 1098, 1908, 2198, 2258
TspGWI ACGGA 1 cut(s) 320
TspRI CASTG 5 cut(s) 1027, 1321, 1779, 2332, 2752
Vha464I CTTAAG 1 cut(s) 1909
VneI GTGCAC 1 cut(s) 435
VpaK11BI GGWCC 4 cut(s) 601, 1426, 1777, 2185
XapI RAATTY 2 cut(s) 560, 1895
XbaI TCTAGA 1 cut(s) 2425
XceI RCATGY 1 cut(s) 1697
XcmI CCANNNNNNNNNTGG 2 cut(s) 782, 2498
XmiI GTMKAC 2 cut(s) 2046, 2091
XmnI GAANNNNTTC 4 cut(s) 645, 1837, 2118, 2609
XspI CTAG 6 cut(s) 468, 1157, 1289, 1704, 2013, 2426
ZrmI AGTACT 1 cut(s) 2068
Zsp2I ATGCAT 2 cut(s) 1002, 1695
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.