Rorug05G0575800

DNA repair and recombination protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0008727
Physical Location & Seq
Reverse (-)
77185408 .. 77190883
5476 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0575800.1

Sequence Viewer

Length: 333 bp
ATGGATTCTAACACTTGGGTATGTGTCGTGGTCCCCCAGTCGATTGAATTGACCGATCTGGAGAGGAAGCGTATTCAGAGGGTCGTGAAGTACTTTGGTAAGGGGACGAGGCGTGTATCTCGTGTGTGTCGTTTCGCTGTACTCGAGGAGTATGGGTTGAGTAGGAAGACGATTAAGATGCCGGATAACAAGGCCAAAGAGAAGAACAAGAAGAAGACGAGTGTGTGTGATGAGTTGTCGGATCATGACTTGGTTTTGGGTCTCGCCAAGGATGCGCTGGAAGCCCAGAGGCATGACGTTAGTCTGCTCTTTTGGCGAAATTTTTTGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000018 GO:0000280 GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006311 GO:0006325 GO:0006338 GO:0006342 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010035 GO:0010038 GO:0010212 GO:0010332 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015616 GO:0016043 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0022402 GO:0022414 GO:0030491 GO:0030702 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0033170 GO:0033554 GO:0034641 GO:0035822 GO:0035825 GO:0035861 GO:0040029 GO:0042221 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045003 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048285 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051321 GO:0051701 GO:0051704 GO:0051716 GO:0060255 GO:0061806 GO:0061982 GO:0065007 GO:0070887 GO:0071214 GO:0071241 GO:0071248 GO:0071478 GO:0071479 GO:0071480 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090734 GO:0097159 GO:0104004 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1902679 GO:1903046 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03440 map03440
Pfam Domains
Protein Families
Helicase_C SNF2_N

Protein Analysis

110

Amino Acids

12.81

Weight (kDa)

9.54

Isoelectric Point (pI)

43.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 249
AcsI RAATTY 1 cut(s) 319
AfaI GTAC 2 cut(s) 92, 141
AgsI TTSAA 1 cut(s) 47
Alw26I GTCTC 1 cut(s) 266
AlwI GGATC 1 cut(s) 249
Ama87I CYCGRG 1 cut(s) 143
AoxI GGCC 1 cut(s) 192
ApoI RAATTY 1 cut(s) 319
AspLEI GCGC 1 cut(s) 277
AspS9I GGNCC 1 cut(s) 31
AvaI CYCGRG 1 cut(s) 143
AvaII GGWCC 1 cut(s) 31
BauI CACGAG 1 cut(s) 120
BbsI GAAGAC 2 cut(s) 173, 221
BcgI CGANNNNNNTGC 2 cut(s) 160, 194
BcoDI GTCTC 1 cut(s) 266
BmcAI AGTACT 1 cut(s) 92
Bme18I GGWCC 1 cut(s) 31
BmeT110I CYCGRG 1 cut(s) 143
BmgT120I GGNCC 1 cut(s) 31
BmiI GGNNCC 1 cut(s) 33
BmrI ACTGGG 1 cut(s) 31
BmsI GCATC 2 cut(s) 168, 262
BmuI ACTGGG 1 cut(s) 31
BoxI GACNNNNGTC 1 cut(s) 300
BpiI GAAGAC 2 cut(s) 173, 221
BpmI CTGGAG 1 cut(s) 80
BsaI GGTCTC 1 cut(s) 266
BsaJI CCNNGG 1 cut(s) 267
BsaXI ACNNNNNCTCC 2 cut(s) 140, 170
Bse1I ACTGG 1 cut(s) 37
BseDI CCNNGG 1 cut(s) 267
BseGI GGATG 1 cut(s) 277
BseNI ACTGG 1 cut(s) 37
BseRI GAGGAG 1 cut(s) 161
BshFI GGCC 1 cut(s) 194
BsiHKCI CYCGRG 1 cut(s) 143
BsiSI CCGG 1 cut(s) 182
BslFI GGGAC 2 cut(s) 17, 118
BsmAI GTCTC 1 cut(s) 266
BsmFI GGGAC 2 cut(s) 17, 118
BsnI GGCC 1 cut(s) 194
Bso31I GGTCTC 1 cut(s) 266
BsoBI CYCGRG 1 cut(s) 143
Bsp143I GATC 2 cut(s) 55, 241
BspANI GGCC 1 cut(s) 194
BspHI TCATGA 1 cut(s) 244
BspLI GGNNCC 1 cut(s) 33
BspPI GGATC 1 cut(s) 249
BspTNI GGTCTC 1 cut(s) 266
BsrI ACTGG 1 cut(s) 37
BssECI CCNNGG 1 cut(s) 267
BssMI GATC 2 cut(s) 55, 241
BssSI CACGAG 1 cut(s) 120
BssT1I CCWWGG 1 cut(s) 267
Bst2BI CACGAG 1 cut(s) 120
BstF5I GGATG 1 cut(s) 277
BstHHI GCGC 1 cut(s) 277
BstKTI GATC 2 cut(s) 58, 244
BstMAI GTCTC 1 cut(s) 266
BstMBI GATC 2 cut(s) 55, 241
BstMWI GCNNNNNNNGC 3 cut(s) 272, 281, 313
BstPAI GACNNNNGTC 1 cut(s) 300
BstV2I GAAGAC 2 cut(s) 173, 221
BsuRI GGCC 1 cut(s) 194
BtsCI GGATG 1 cut(s) 277
CciI TCATGA 1 cut(s) 244
CfoI GCGC 1 cut(s) 277
Cfr13I GGNCC 1 cut(s) 31
Csp6I GTAC 2 cut(s) 91, 140
CviAII CATG 2 cut(s) 245, 293
CviJI RGCY 2 cut(s) 194, 284
CviKI_1 RGCY 2 cut(s) 194, 284
CviQI GTAC 2 cut(s) 91, 140
DpnI GATC 2 cut(s) 57, 243
DpnII GATC 2 cut(s) 55, 241
Eco130I CCWWGG 1 cut(s) 267
Eco31I GGTCTC 1 cut(s) 266
Eco47I GGWCC 1 cut(s) 31
Eco88I CYCGRG 1 cut(s) 143
EcoT14I CCWWGG 1 cut(s) 267
ErhI CCWWGG 1 cut(s) 267
FaeI CATG 2 cut(s) 248, 296
FaiI YATR 4 cut(s) 22, 153, 246, 294
FaqI GGGAC 2 cut(s) 17, 118
FatI CATG 2 cut(s) 244, 292
FokI GGATG 1 cut(s) 284
GlaI GCGC 1 cut(s) 276
GsuI CTGGAG 1 cut(s) 80
HaeIII GGCC 1 cut(s) 194
HapII CCGG 1 cut(s) 182
HhaI GCGC 1 cut(s) 277
Hin1II CATG 2 cut(s) 248, 296
Hin6I GCGC 1 cut(s) 275
HinP1I GCGC 1 cut(s) 275
HinfI GANTC 1 cut(s) 5
HpaII CCGG 1 cut(s) 182
Hpy188I TCNGA 2 cut(s) 78, 241
Hpy188III TCNNGA 3 cut(s) 59, 85, 245
HpyCH4IV ACGT 1 cut(s) 297
HpyF10VI GCNNNNNNNGC 3 cut(s) 272, 281, 313
HpySE526I ACGT 1 cut(s) 297
Hsp92II CATG 2 cut(s) 248, 296
HspAI GCGC 1 cut(s) 275
Kzo9I GATC 2 cut(s) 55, 241
LpnPI CCDG 5 cut(s) 44, 50, 195, 263, 299
LweI GCATC 2 cut(s) 168, 262
MaeII ACGT 1 cut(s) 297
MalI GATC 2 cut(s) 57, 243
MboI GATC 2 cut(s) 55, 241
MboII GAAGA 4 cut(s) 178, 214, 223, 226
MluCI AATT 2 cut(s) 47, 319
MmeI TCCRAC 1 cut(s) 219
MnlI CCTC 5 cut(s) 57, 72, 102, 139, 282
MseI TTAA 1 cut(s) 174
MspI CCGG 1 cut(s) 182
MwoI GCNNNNNNNGC 3 cut(s) 272, 281, 313
NdeII GATC 2 cut(s) 55, 241
NlaIII CATG 2 cut(s) 248, 296
NlaIV GGNNCC 1 cut(s) 33
PaeR7I CTCGAG 1 cut(s) 143
PagI TCATGA 1 cut(s) 244
PcsI WCGNNNNNNNCGW 2 cut(s) 127, 141
PfeI GAWTC 1 cut(s) 5
PshAI GACNNNNGTC 1 cut(s) 300
PspN4I GGNNCC 1 cut(s) 33
PspPI GGNCC 1 cut(s) 31
PspXI VCTCGAGB 1 cut(s) 143
RsaI GTAC 2 cut(s) 92, 141
RsaNI GTAC 2 cut(s) 91, 140
SaqAI TTAA 1 cut(s) 174
Sau3AI GATC 2 cut(s) 55, 241
Sau96I GGNCC 1 cut(s) 31
ScaI AGTACT 1 cut(s) 92
SetI ASST 1 cut(s) 300
SfaNI GCATC 2 cut(s) 168, 262
Sfr274I CTCGAG 1 cut(s) 143
SinI GGWCC 1 cut(s) 31
SlaI CTCGAG 1 cut(s) 143
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
Sse9I AATT 2 cut(s) 47, 319
StyI CCWWGG 1 cut(s) 267
TaiI ACGT 1 cut(s) 300
TaqI TCGA 2 cut(s) 41, 144
TaqII GACCGA 1 cut(s) 68
TasI AATT 2 cut(s) 47, 319
TatI WGTACW 2 cut(s) 90, 139
TfiI GAWTC 1 cut(s) 5
Tru1I TTAA 1 cut(s) 174
Tru9I TTAA 1 cut(s) 174
VpaK11BI GGWCC 1 cut(s) 31
XapI RAATTY 1 cut(s) 319
XcmI CCANNNNNNNNNTGG 1 cut(s) 274
XhoI CTCGAG 1 cut(s) 143
ZrmI AGTACT 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.