Rmu_sc0006706.1_g000007

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006706.1
OG0021183
Physical Location & Seq
Forward (+)
31532 .. 32026
495 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006706.1_g000007.1.cds

Sequence Viewer

Length: 495 bp
atgactcttcatcatcttgtgtgtgggagcactttttattgtgctttacactcccacaacctctccgccgccacagccaccctacccacctgcttcgtcttccccgactccgccttcttgggccggcctgtcttccccaacacagtccgggctcacatcctaccttccttagccttgcctctcgaatccctcctcctactccgacccaacaccgccctcccaactctccgccgcaacaccacattgatttccggcaccgatggcaaaacggtctcgttgaataatgttctgatcaccgccccgaatctccacgtcgacgattcttgcgtcgtgcatggcgtcgaaggcccgttaatagatgatgatgatgatgtgctcagaacaaagattaatgtgacatctccacggcgtcgttttgcagtggttgtccggttcattcgccgaatgcgccctccggttcttggtgataagaatcaagataccaaaaatccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

18.01

Weight (kDa)

9.16

Isoelectric Point (pI)

52.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021183)

Species Orthologous Gene IDs
malus_domestica MD04G1109900.v1.1
pyrus_communis pycom04g10610 pycom12g12730
rosa_multiflora Rmu_sc0006706.1_g000007
rosa_roxburghii Rroxscaffold_6G00413190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 98
Acc36I ACCTGC 1 cut(s) 98
AccB1I GGYRCC 1 cut(s) 254
AccI GTMKAC 1 cut(s) 315
AciI CCGC 7 cut(s) 66, 69, 111, 213, 229, 232, 297
AcyI GRCGYC 2 cut(s) 339, 409
AfiI CCNNNNNNNGG 1 cut(s) 461
AgsI TTSAA 1 cut(s) 280
AjiI CACGTC 1 cut(s) 313
Alw21I GWGCWC 2 cut(s) 32, 378
Alw26I GTCTC 1 cut(s) 277
AoxI GGCC 3 cut(s) 121, 125, 346
AseI ATTAAT 1 cut(s) 390
AspLEI GCGC 1 cut(s) 450
AspS9I GGNCC 2 cut(s) 121, 347
AsuC2I CCSGG 1 cut(s) 149
AsuHPI GGTGA 2 cut(s) 286, 476
BanI GGYRCC 1 cut(s) 254
BanII GRGCYC 1 cut(s) 154
BbsI GAAGAC 2 cut(s) 91, 124
Bbv12I GWGCWC 2 cut(s) 32, 378
BccI CCATC 1 cut(s) 254
BceAI ACGGC 1 cut(s) 422
BclI TGATCA 1 cut(s) 291
BcnI CCSGG 1 cut(s) 149
BcoDI GTCTC 1 cut(s) 277
BfuAI ACCTGC 1 cut(s) 98
BisI GCNGC 2 cut(s) 69, 232
BlsI GCNGC 2 cut(s) 70, 233
Bme1390I CCNGG 1 cut(s) 149
BmgBI CACGTC 1 cut(s) 313
BmgT120I GGNCC 2 cut(s) 121, 347
BmiI GGNNCC 1 cut(s) 256
BmrFI CCNGG 1 cut(s) 149
BpiI GAAGAC 2 cut(s) 91, 124
Bpu10I CCTNAGC 1 cut(s) 169
BpuMI CCSGG 1 cut(s) 149
BsaBI GATNNNNATC 1 cut(s) 471
BsaHI GRCGYC 2 cut(s) 339, 409
BsaI GGTCTC 1 cut(s) 277
BsaJI CCNNGG 1 cut(s) 404
BsaWI WCCGGW 2 cut(s) 429, 454
BsaXI ACNNNNNCTCC 2 cut(s) 47, 77
Bsc4I CCNNNNNNNGG 1 cut(s) 461
Bse118I RCCGGY 1 cut(s) 123
Bse8I GATNNNNATC 1 cut(s) 471
BseDI CCNNGG 1 cut(s) 404
BseGI GGATG 1 cut(s) 156
BseJI GATNNNNATC 1 cut(s) 471
BseLI CCNNNNNNNGG 1 cut(s) 461
BseMII CTCAG 1 cut(s) 391
BseRI GAGGAG 1 cut(s) 182
BshFI GGCC 3 cut(s) 123, 127, 348
BshNI GGYRCC 1 cut(s) 254
BsiHKAI GWGCWC 2 cut(s) 32, 378
BsiSI CCGG 5 cut(s) 124, 148, 252, 430, 455
BslI CCNNNNNNNGG 1 cut(s) 461
BsmAI GTCTC 1 cut(s) 277
BsmI GAATGC 1 cut(s) 450
BsnI GGCC 3 cut(s) 123, 127, 348
Bso31I GGTCTC 1 cut(s) 277
Bsp1286I GDGCHC 3 cut(s) 32, 154, 378
Bsp143I GATC 1 cut(s) 291
BspACI CCGC 7 cut(s) 66, 69, 111, 213, 229, 232, 297
BspANI GGCC 3 cut(s) 123, 127, 348
BspCNI CTCAG 1 cut(s) 390
BspLI GGNNCC 1 cut(s) 256
BspMI ACCTGC 1 cut(s) 98
BspT107I GGYRCC 1 cut(s) 254
BspTNI GGTCTC 1 cut(s) 277
BsrFI RCCGGY 1 cut(s) 123
BssAI RCCGGY 1 cut(s) 123
BssECI CCNNGG 1 cut(s) 404
BssMI GATC 1 cut(s) 291
BssNI GRCGYC 2 cut(s) 339, 409
Bst4CI ACNGT 2 cut(s) 145, 271
Bst6I CTCTTC 1 cut(s) 12
BstACI GRCGYC 2 cut(s) 339, 409
BstC8I GCNNGC 1 cut(s) 125
BstDEI CTNAG 2 cut(s) 169, 377
BstDSI CCRYGG 1 cut(s) 404
BstF5I GGATG 1 cut(s) 156
BstHHI GCGC 1 cut(s) 450
BstKTI GATC 1 cut(s) 294
BstMAI GTCTC 1 cut(s) 277
BstMBI GATC 1 cut(s) 291
BstMWI GCNNNNNNNGC 4 cut(s) 74, 261, 345, 447
BstSCI CCNGG 1 cut(s) 147
BstV2I GAAGAC 2 cut(s) 91, 124
BsuRI GGCC 3 cut(s) 123, 127, 348
BtgI CCRYGG 1 cut(s) 404
BtrI CACGTC 1 cut(s) 313
BtsCI GGATG 1 cut(s) 156
BtsI GCAGTG 1 cut(s) 426
BtsIMutI CAGTG 1 cut(s) 426
BveI ACCTGC 1 cut(s) 98
Cac8I GCNNGC 1 cut(s) 125
CfoI GCGC 1 cut(s) 450
Cfr10I RCCGGY 1 cut(s) 123
Cfr13I GGNCC 2 cut(s) 121, 347
CseI GACGC 3 cut(s) 316, 328, 398
CviAII CATG 1 cut(s) 335
CviJI RGCY 6 cut(s) 77, 123, 127, 152, 173, 348
CviKI_1 RGCY 6 cut(s) 77, 123, 127, 152, 173, 348
DdeI CTNAG 2 cut(s) 169, 377
DpnI GATC 1 cut(s) 293
DpnII GATC 1 cut(s) 291
Eam1104I CTCTTC 1 cut(s) 12
EarI CTCTTC 1 cut(s) 12
EciI GGCGGA 3 cut(s) 55, 100, 218
Eco24I GRGCYC 1 cut(s) 154
Eco31I GGTCTC 1 cut(s) 277
EcoT38I GRGCYC 1 cut(s) 154
FaeI CATG 1 cut(s) 338
FaiI YATR 1 cut(s) 336
FatI CATG 1 cut(s) 334
FbaI TGATCA 1 cut(s) 291
FblI GTMKAC 1 cut(s) 315
Fnu4HI GCNGC 2 cut(s) 69, 232
FokI GGATG 1 cut(s) 143
FriOI GRGCYC 1 cut(s) 154
FseI GGCCGGCC 1 cut(s) 127
Fsp4HI GCNGC 2 cut(s) 69, 232
GlaI GCGC 1 cut(s) 449
GluI GCNGC 2 cut(s) 69, 232
HaeIII GGCC 3 cut(s) 123, 127, 348
HapII CCGG 5 cut(s) 124, 148, 252, 430, 455
HgaI GACGC 3 cut(s) 316, 328, 398
HhaI GCGC 1 cut(s) 450
Hin1I GRCGYC 2 cut(s) 339, 409
Hin1II CATG 1 cut(s) 338
Hin6I GCGC 1 cut(s) 448
HinP1I GCGC 1 cut(s) 448
HincII GTYRAC 1 cut(s) 316
HindII GTYRAC 1 cut(s) 316
HinfI GANTC 6 cut(s) 4, 107, 185, 304, 320, 472
HpaII CCGG 5 cut(s) 124, 148, 252, 430, 455
HphI GGTGA 2 cut(s) 286, 476
Hpy166II GTNNAC 1 cut(s) 316
Hpy188I TCNGA 3 cut(s) 203, 291, 380
Hpy188III TCNNGA 2 cut(s) 182, 476
Hpy8I GTNNAC 1 cut(s) 316
Hpy99I CGWCG 5 cut(s) 317, 320, 332, 344, 414
HpyAV CCTTC 3 cut(s) 124, 174, 338
HpyCH4III ACNGT 2 cut(s) 145, 271
HpyCH4IV ACGT 1 cut(s) 312
HpyCH4V TGCA 2 cut(s) 334, 419
HpyF10VI GCNNNNNNNGC 4 cut(s) 74, 261, 345, 447
HpyF3I CTNAG 2 cut(s) 169, 377
HpySE526I ACGT 1 cut(s) 312
Hsp92I GRCGYC 2 cut(s) 339, 409
Hsp92II CATG 1 cut(s) 338
HspAI GCGC 1 cut(s) 448
KroI GCCGGC 1 cut(s) 123
KroNI GCCGGC 1 cut(s) 125
Ksp22I TGATCA 1 cut(s) 291
Kzo9I GATC 1 cut(s) 291
LmnI GCTCC 1 cut(s) 27
LpnPI CCDG 7 cut(s) 103, 137, 141, 161, 265, 443, 468
MaeII ACGT 1 cut(s) 312
MaeIII GTNAC 1 cut(s) 394
MalI GATC 1 cut(s) 293
MboI GATC 1 cut(s) 291
MboII GAAGA 2 cut(s) 91, 124
MhlI GDGCHC 3 cut(s) 32, 154, 378
MlyI GAGTC 1 cut(s) 101
MmeI TCCRAC 1 cut(s) 226
MnlI CCTC 6 cut(s) 71, 189, 200, 203, 227, 462
MroNI GCCGGC 1 cut(s) 123
MseI TTAA 2 cut(s) 353, 390
MspI CCGG 5 cut(s) 124, 148, 252, 430, 455
MspR9I CCNGG 1 cut(s) 149
Mva1269I GAATGC 1 cut(s) 450
MwoI GCNNNNNNNGC 4 cut(s) 74, 261, 345, 447
NaeI GCCGGC 1 cut(s) 125
NciI CCSGG 1 cut(s) 149
NdeII GATC 1 cut(s) 291
NgoMIV GCCGGC 1 cut(s) 123
NlaIII CATG 1 cut(s) 338
NlaIV GGNNCC 1 cut(s) 256
NmuCI GTSAC 1 cut(s) 394
PaqCI CACCTGC 1 cut(s) 98
PcsI WCGNNNNNNNCGW 3 cut(s) 102, 324, 336
PctI GAATGC 1 cut(s) 450
PdiI GCCGGC 1 cut(s) 125
PfeI GAWTC 4 cut(s) 185, 304, 320, 472
PkrI GCNGC 2 cut(s) 70, 233
PleI GAGTC 1 cut(s) 101
PpsI GAGTC 1 cut(s) 101
PshBI ATTAAT 1 cut(s) 390
PspN4I GGNNCC 1 cut(s) 256
PspPI GGNCC 2 cut(s) 121, 347
RigI GGCCGGCC 1 cut(s) 127
SalI GTCGAC 1 cut(s) 314
SaqAI TTAA 2 cut(s) 353, 390
SatI GCNGC 2 cut(s) 69, 232
Sau3AI GATC 1 cut(s) 291
Sau96I GGNCC 2 cut(s) 121, 347
SchI GAGTC 1 cut(s) 101
ScrFI CCNGG 1 cut(s) 149
SduI GDGCHC 3 cut(s) 32, 154, 378
SetI ASST 4 cut(s) 63, 92, 166, 315
SgrDI CGTCGACG 1 cut(s) 314
SsiI CCGC 7 cut(s) 66, 69, 111, 213, 229, 232, 297
StyD4I CCNGG 1 cut(s) 147
TaaI ACNGT 2 cut(s) 145, 271
TaiI ACGT 1 cut(s) 315
TaqI TCGA 3 cut(s) 183, 315, 342
TauI GCSGC 2 cut(s) 71, 234
TfiI GAWTC 4 cut(s) 185, 304, 320, 472
Tru1I TTAA 2 cut(s) 353, 390
Tru9I TTAA 2 cut(s) 353, 390
TscAI CASTG 1 cut(s) 426
TseFI GTSAC 1 cut(s) 394
Tsp45I GTSAC 1 cut(s) 394
TspDTI ATGAA 1 cut(s) 424
TspRI CASTG 1 cut(s) 426
VspI ATTAAT 1 cut(s) 390
XmiI GTMKAC 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.