Rroxscaffold_6G00413190

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0021183
Physical Location & Seq
Reverse (-)
35612779 .. 35613276
498 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00413190.1

Sequence Viewer

Length: 498 bp
ATGATTCTTCATCATCTTGAGTGTGGGAGCACTTTTTATTGTGCTTTACACTCCCACAACCTCTCCGCCGCCACAGCCACCCGACCCACCTGCTTCGTCTTCCCCGACTCCGCCTTCTTGGGCCGGCCTGTCTTCCCCAACACCGTCCGGGCTCACATCCTACCCTCCTTAGCCTTGCCTCTCGAATCCCGACTCCGACTCCGACCCAACACCGCCCTCCCAACTCTCCGCCGCAACACCACATTGATTTCCGGCACCGACGGCAAAACGGTCTCGTTGAATAATGTTCTGATCACCGCCCCGAATCTCCACGTCGACGATTCTTGCGTCGTGCATGGCGTCGAAGGCCCGTTAATAGATGATGATGATGATGATGTGCTCAGAACAAAGATTAATGTGACATCTCCCCGGCGTCGTTTTGCAGTGGTTGTCCTGTTCATTGGCCGAATGCGCCCTCCGGTTCTTGGTGATAAGAATCAAGATACCAAAAATCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

165

Amino Acids

18.15

Weight (kDa)

8.86

Isoelectric Point (pI)

54.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021183)

Species Orthologous Gene IDs
malus_domestica MD04G1109900.v1.1
pyrus_communis pycom04g10610 pycom12g12730
rosa_multiflora Rmu_sc0006706.1_g000007
rosa_roxburghii Rroxscaffold_6G00413190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 98
Acc36I ACCTGC 1 cut(s) 98
AccB1I GGYRCC 1 cut(s) 254
AccI GTMKAC 1 cut(s) 315
AciI CCGC 7 cut(s) 66, 69, 111, 213, 229, 232, 297
AcoI YGGCCR 1 cut(s) 442
AcyI GRCGYC 2 cut(s) 339, 412
AfiI CCNNNNNNNGG 1 cut(s) 464
AgsI TTSAA 1 cut(s) 280
AjiI CACGTC 1 cut(s) 313
Alw21I GWGCWC 2 cut(s) 32, 381
Alw26I GTCTC 1 cut(s) 277
AoxI GGCC 4 cut(s) 121, 125, 346, 442
AseI ATTAAT 1 cut(s) 393
AspLEI GCGC 1 cut(s) 453
AspS9I GGNCC 2 cut(s) 121, 347
AsuC2I CCSGG 2 cut(s) 149, 409
AsuHPI GGTGA 2 cut(s) 286, 479
BanI GGYRCC 1 cut(s) 254
BanII GRGCYC 1 cut(s) 154
BbsI GAAGAC 2 cut(s) 91, 124
Bbv12I GWGCWC 2 cut(s) 32, 381
BceAI ACGGC 1 cut(s) 277
BcgI CGANNNNNNTGC 2 cut(s) 72, 106
BclI TGATCA 1 cut(s) 291
BcnI CCSGG 2 cut(s) 149, 409
BcoDI GTCTC 1 cut(s) 277
BfuAI ACCTGC 1 cut(s) 98
BisI GCNGC 2 cut(s) 69, 232
BlsI GCNGC 2 cut(s) 70, 233
Bme1390I CCNGG 2 cut(s) 149, 409
BmgBI CACGTC 1 cut(s) 313
BmgT120I GGNCC 2 cut(s) 121, 347
BmiI GGNNCC 1 cut(s) 256
BmrFI CCNGG 2 cut(s) 149, 409
BpiI GAAGAC 2 cut(s) 91, 124
Bpu10I CCTNAGC 1 cut(s) 169
BpuEI CTTGAG 1 cut(s) 38
BpuMI CCSGG 2 cut(s) 149, 409
BsaBI GATNNNNATC 1 cut(s) 474
BsaHI GRCGYC 2 cut(s) 339, 412
BsaI GGTCTC 1 cut(s) 277
BsaJI CCNNGG 1 cut(s) 407
BsaWI WCCGGW 1 cut(s) 457
BsaXI ACNNNNNCTCC 4 cut(s) 47, 77, 183, 213
Bsc4I CCNNNNNNNGG 1 cut(s) 464
Bse118I RCCGGY 1 cut(s) 123
Bse8I GATNNNNATC 1 cut(s) 474
BseDI CCNNGG 1 cut(s) 407
BseGI GGATG 1 cut(s) 156
BseJI GATNNNNATC 1 cut(s) 474
BseLI CCNNNNNNNGG 1 cut(s) 464
BseMII CTCAG 1 cut(s) 394
BshFI GGCC 4 cut(s) 123, 127, 348, 444
BshNI GGYRCC 1 cut(s) 254
BsiHKAI GWGCWC 2 cut(s) 32, 381
BsiSI CCGG 5 cut(s) 124, 148, 252, 409, 458
BslI CCNNNNNNNGG 1 cut(s) 464
BsmAI GTCTC 1 cut(s) 277
BsmI GAATGC 1 cut(s) 453
BsnI GGCC 4 cut(s) 123, 127, 348, 444
Bso31I GGTCTC 1 cut(s) 277
Bsp1286I GDGCHC 3 cut(s) 32, 154, 381
Bsp143I GATC 1 cut(s) 291
BspACI CCGC 7 cut(s) 66, 69, 111, 213, 229, 232, 297
BspANI GGCC 4 cut(s) 123, 127, 348, 444
BspCNI CTCAG 1 cut(s) 393
BspLI GGNNCC 1 cut(s) 256
BspMI ACCTGC 1 cut(s) 98
BspT107I GGYRCC 1 cut(s) 254
BspTNI GGTCTC 1 cut(s) 277
BsrFI RCCGGY 1 cut(s) 123
BssAI RCCGGY 1 cut(s) 123
BssECI CCNNGG 1 cut(s) 407
BssMI GATC 1 cut(s) 291
BssNI GRCGYC 2 cut(s) 339, 412
Bst4CI ACNGT 2 cut(s) 145, 271
BstACI GRCGYC 2 cut(s) 339, 412
BstC8I GCNNGC 1 cut(s) 125
BstDEI CTNAG 2 cut(s) 169, 380
BstF5I GGATG 1 cut(s) 156
BstHHI GCGC 1 cut(s) 453
BstKTI GATC 1 cut(s) 294
BstMAI GTCTC 1 cut(s) 277
BstMBI GATC 1 cut(s) 291
BstMWI GCNNNNNNNGC 4 cut(s) 74, 261, 345, 450
BstSCI CCNGG 2 cut(s) 147, 407
BstV2I GAAGAC 2 cut(s) 91, 124
BsuRI GGCC 4 cut(s) 123, 127, 348, 444
BtrI CACGTC 1 cut(s) 313
BtsCI GGATG 1 cut(s) 156
BtsI GCAGTG 1 cut(s) 429
BtsIMutI CAGTG 1 cut(s) 429
BveI ACCTGC 1 cut(s) 98
Cac8I GCNNGC 1 cut(s) 125
CfoI GCGC 1 cut(s) 453
Cfr10I RCCGGY 1 cut(s) 123
Cfr13I GGNCC 2 cut(s) 121, 347
CseI GACGC 3 cut(s) 316, 328, 401
CviAII CATG 1 cut(s) 335
CviJI RGCY 7 cut(s) 77, 123, 127, 152, 173, 348, 444
CviKI_1 RGCY 7 cut(s) 77, 123, 127, 152, 173, 348, 444
DdeI CTNAG 2 cut(s) 169, 380
DpnI GATC 1 cut(s) 293
DpnII GATC 1 cut(s) 291
EaeI YGGCCR 1 cut(s) 442
EciI GGCGGA 3 cut(s) 55, 100, 218
Eco24I GRGCYC 1 cut(s) 154
Eco31I GGTCTC 1 cut(s) 277
EcoT38I GRGCYC 1 cut(s) 154
FaeI CATG 1 cut(s) 338
FaiI YATR 1 cut(s) 336
FatI CATG 1 cut(s) 334
FbaI TGATCA 1 cut(s) 291
FblI GTMKAC 1 cut(s) 315
Fnu4HI GCNGC 2 cut(s) 69, 232
FokI GGATG 1 cut(s) 143
FriOI GRGCYC 1 cut(s) 154
FseI GGCCGGCC 1 cut(s) 127
Fsp4HI GCNGC 2 cut(s) 69, 232
GlaI GCGC 1 cut(s) 452
GluI GCNGC 2 cut(s) 69, 232
HaeIII GGCC 4 cut(s) 123, 127, 348, 444
HapII CCGG 5 cut(s) 124, 148, 252, 409, 458
HgaI GACGC 3 cut(s) 316, 328, 401
HhaI GCGC 1 cut(s) 453
Hin1I GRCGYC 2 cut(s) 339, 412
Hin1II CATG 1 cut(s) 338
Hin6I GCGC 1 cut(s) 451
HinP1I GCGC 1 cut(s) 451
HincII GTYRAC 1 cut(s) 316
HindII GTYRAC 1 cut(s) 316
HinfI GANTC 8 cut(s) 4, 107, 185, 192, 198, 304, 320, 475
HpaII CCGG 5 cut(s) 124, 148, 252, 409, 458
HphI GGTGA 2 cut(s) 286, 479
Hpy166II GTNNAC 1 cut(s) 316
Hpy188I TCNGA 4 cut(s) 197, 203, 291, 383
Hpy188III TCNNGA 4 cut(s) 17, 182, 189, 479
Hpy8I GTNNAC 1 cut(s) 316
Hpy99I CGWCG 6 cut(s) 263, 317, 320, 332, 344, 417
HpyAV CCTTC 2 cut(s) 124, 338
HpyCH4III ACNGT 2 cut(s) 145, 271
HpyCH4IV ACGT 1 cut(s) 312
HpyCH4V TGCA 2 cut(s) 334, 422
HpyF10VI GCNNNNNNNGC 4 cut(s) 74, 261, 345, 450
HpyF3I CTNAG 2 cut(s) 169, 380
HpySE526I ACGT 1 cut(s) 312
Hsp92I GRCGYC 2 cut(s) 339, 412
Hsp92II CATG 1 cut(s) 338
HspAI GCGC 1 cut(s) 451
KroI GCCGGC 1 cut(s) 123
KroNI GCCGGC 1 cut(s) 125
Ksp22I TGATCA 1 cut(s) 291
Kzo9I GATC 1 cut(s) 291
LmnI GCTCC 1 cut(s) 27
LpnPI CCDG 8 cut(s) 103, 137, 141, 161, 265, 422, 446, 471
MaeII ACGT 1 cut(s) 312
MaeIII GTNAC 1 cut(s) 397
MalI GATC 1 cut(s) 293
MboI GATC 1 cut(s) 291
MboII GAAGA 2 cut(s) 91, 124
MhlI GDGCHC 3 cut(s) 32, 154, 381
MlyI GAGTC 3 cut(s) 101, 186, 192
MmeI TCCRAC 2 cut(s) 220, 226
MnlI CCTC 5 cut(s) 71, 175, 189, 227, 465
MroNI GCCGGC 1 cut(s) 123
MseI TTAA 2 cut(s) 353, 393
MspI CCGG 5 cut(s) 124, 148, 252, 409, 458
MspR9I CCNGG 2 cut(s) 149, 409
Mva1269I GAATGC 1 cut(s) 453
MwoI GCNNNNNNNGC 4 cut(s) 74, 261, 345, 450
NaeI GCCGGC 1 cut(s) 125
NciI CCSGG 2 cut(s) 149, 409
NdeII GATC 1 cut(s) 291
NgoMIV GCCGGC 1 cut(s) 123
NlaIII CATG 1 cut(s) 338
NlaIV GGNNCC 1 cut(s) 256
NmuCI GTSAC 1 cut(s) 397
PaqCI CACCTGC 1 cut(s) 98
PcsI WCGNNNNNNNCGW 3 cut(s) 102, 324, 336
PctI GAATGC 1 cut(s) 453
PdiI GCCGGC 1 cut(s) 125
PfeI GAWTC 5 cut(s) 4, 185, 304, 320, 475
PkrI GCNGC 2 cut(s) 70, 233
PleI GAGTC 3 cut(s) 101, 186, 192
PpsI GAGTC 3 cut(s) 101, 186, 192
PshBI ATTAAT 1 cut(s) 393
PspN4I GGNNCC 1 cut(s) 256
PspPI GGNCC 2 cut(s) 121, 347
RigI GGCCGGCC 1 cut(s) 127
SalI GTCGAC 1 cut(s) 314
SaqAI TTAA 2 cut(s) 353, 393
SatI GCNGC 2 cut(s) 69, 232
Sau3AI GATC 1 cut(s) 291
Sau96I GGNCC 2 cut(s) 121, 347
SchI GAGTC 3 cut(s) 101, 186, 192
ScrFI CCNGG 2 cut(s) 149, 409
SduI GDGCHC 3 cut(s) 32, 154, 381
SetI ASST 3 cut(s) 63, 92, 315
SgrDI CGTCGACG 1 cut(s) 314
SmlI CTYRAG 1 cut(s) 17
SmoI CTYRAG 1 cut(s) 17
SsiI CCGC 7 cut(s) 66, 69, 111, 213, 229, 232, 297
StyD4I CCNGG 2 cut(s) 147, 407
TaaI ACNGT 2 cut(s) 145, 271
TaiI ACGT 1 cut(s) 315
TaqI TCGA 3 cut(s) 183, 315, 342
TauI GCSGC 2 cut(s) 71, 234
TfiI GAWTC 5 cut(s) 4, 185, 304, 320, 475
Tru1I TTAA 2 cut(s) 353, 393
Tru9I TTAA 2 cut(s) 353, 393
TscAI CASTG 1 cut(s) 429
TseFI GTSAC 1 cut(s) 397
Tsp45I GTSAC 1 cut(s) 397
TspDTI ATGAA 1 cut(s) 427
TspRI CASTG 1 cut(s) 429
VspI ATTAAT 1 cut(s) 393
XmiI GTMKAC 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.