Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006885.1

Orthogroup ID

OG0021418

Physical Location & Seq

Genomic Coordinates Forward (+)

34323 .. 34814

Gene Structure 492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006885.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

atgcaagaaaaggccaactcttgggcttacaccactcgaacgattggagtgatggtgatggtgcatggagatgacagagggttggtaatgccacctaaagtggcaactctgcaggctattgtgattccagtgatttctaggaatgctgatgcagaggccatattggaggcctgccggaaaactttcgacaccttgaaaaaagctggttttcgtgtcaaggcagatttgagtagaaactctacacctggtcagaagtattggcattgggagatgaagggtgttcctctgaggattgaaataggacagagggatttggacagaaatcaagtgcggtttgttcgtcgggacaagtccgaaaaagtggacattcctctgaacaatgatttggttgagcgagtaaaggagacgttggatagaattcagcaaaacatgtttgatgttgctagggtatccaagttgcaaggacatgggaggaatttacggaagctctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004827 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006433 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016874 GO:0016875 GO:0017101 GO:0019538 GO:0019752 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0055044 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon ProRS-C_1 tRNA-synt_2b

Protein Analysis

163

Amino Acids

18.75

Weight (kDa)

10.05

Isoelectric Point (pI)

31.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021418)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0012941
rosa_multiflora	Rmu_sc0006885.1_g000006
rosa_samantha	Rh5AG099700 Rh5CG108600 Rh5DG095100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	21
AciI	CCGC	1 cut(s)	331
AcsI	RAATTY	2 cut(s)	417, 475
AfiI	CCNNNNNNNGG	1 cut(s)	21
AflIII	ACRYGT	1 cut(s)	429
AgsI	TTSAA	2 cut(s)	196, 296
AjnI	CCWGG	1 cut(s)	244
AjuI	GAANNNNNNNTTGG	2 cut(s)	368, 400
AluBI	AGCT	2 cut(s)	203, 487
AluI	AGCT	2 cut(s)	203, 487
Alw26I	GTCTC	1 cut(s)	398
AoxI	GGCC	3 cut(s)	12, 156, 168
ApoI	RAATTY	2 cut(s)	417, 475
Asp700I	GAANNNNTTC	1 cut(s)	182
AsuHPI	GGTGA	1 cut(s)	67
BccI	CCATC	2 cut(s)	46, 52
BciT130I	CCWGG	1 cut(s)	246
BciVI	GTATCC	1 cut(s)	460
BcoDI	GTCTC	1 cut(s)	398
BfaI	CTAG	2 cut(s)	138, 444
BfmI	CTRYAG	1 cut(s)	110
BfuI	GTATCC	1 cut(s)	460
Bme1390I	CCNGG	1 cut(s)	246
BmrFI	CCNGG	1 cut(s)	246
BmsI	GCATC	1 cut(s)	139
BsaXI	ACNNNNNCTCC	2 cut(s)	39, 69
Bsc4I	CCNNNNNNNGG	1 cut(s)	21
Bse1I	ACTGG	1 cut(s)	128
BseBI	CCWGG	1 cut(s)	246
BseLI	CCNNNNNNNGG	1 cut(s)	21
BseMII	CTCAG	1 cut(s)	278
BseNI	ACTGG	1 cut(s)	128
BshFI	GGCC	3 cut(s)	14, 158, 170
BsiSI	CCGG	1 cut(s)	175
BslFI	GGGAC	1 cut(s)	359
BslI	CCNNNNNNNGG	1 cut(s)	21
BsmAI	GTCTC	1 cut(s)	398
BsmBI	CGTCTC	1 cut(s)	398
BsmFI	GGGAC	1 cut(s)	359
BsmI	GAATGC	1 cut(s)	148
BsnI	GGCC	3 cut(s)	14, 158, 170
BspACI	CCGC	1 cut(s)	331
BspANI	GGCC	3 cut(s)	14, 158, 170
BspCNI	CTCAG	1 cut(s)	279
BspMAI	CTGCAG	1 cut(s)	114
BsrI	ACTGG	1 cut(s)	128
Bst2UI	CCWGG	1 cut(s)	246
BstC8I	GCNNGC	2 cut(s)	114, 172
BstDEI	CTNAG	1 cut(s)	287
BstMAI	GTCTC	1 cut(s)	398
BstNI	CCWGG	1 cut(s)	246
BstNSI	RCATGY	1 cut(s)	433
BstSCI	CCNGG	1 cut(s)	244
BstSFI	CTRYAG	1 cut(s)	110
BsuI	GTATCC	1 cut(s)	460
BsuRI	GGCC	3 cut(s)	14, 158, 170
BtsIMutI	CAGTG	1 cut(s)	135
Cac8I	GCNNGC	2 cut(s)	114, 172
CsiI	ACCWGGT	1 cut(s)	244
CviAII	CATG	3 cut(s)	65, 430, 467
CviJI	RGCY	7 cut(s)	14, 26, 116, 158, 170, 203, 487
CviKI_1	RGCY	7 cut(s)	14, 26, 116, 158, 170, 203, 487
DdeI	CTNAG	1 cut(s)	287
Eco147I	AGGCCT	1 cut(s)	170
EcoRI	GAATTC	1 cut(s)	417
EcoRII	CCWGG	1 cut(s)	244
Esp3I	CGTCTC	1 cut(s)	398
FaeI	CATG	3 cut(s)	68, 433, 470
FaiI	YATR	4 cut(s)	66, 161, 431, 468
FaqI	GGGAC	1 cut(s)	359
FatI	CATG	3 cut(s)	64, 429, 466
FspBI	CTAG	2 cut(s)	138, 444
HaeIII	GGCC	3 cut(s)	14, 158, 170
HapII	CCGG	1 cut(s)	175
Hin1II	CATG	3 cut(s)	68, 433, 470
HinfI	GANTC	1 cut(s)	124
HpaII	CCGG	1 cut(s)	175
HphI	GGTGA	1 cut(s)	67
Hpy166II	GTNNAC	1 cut(s)	364
Hpy188I	TCNGA	4 cut(s)	252, 288, 355, 375
Hpy188III	TCNNGA	1 cut(s)	344
Hpy8I	GTNNAC	1 cut(s)	364
Hpy99I	CGWCG	1 cut(s)	345
HpyAV	CCTTC	1 cut(s)	268
HpyCH4IV	ACGT	1 cut(s)	407
HpyCH4V	TGCA	5 cut(s)	4, 64, 112, 152, 460
HpyF3I	CTNAG	1 cut(s)	287
HpySE526I	ACGT	1 cut(s)	407
Hsp92II	CATG	3 cut(s)	68, 433, 470
LpnPI	CCDG	7 cut(s)	98, 141, 184, 188, 189, 231, 258
LweI	GCATC	1 cut(s)	139
MabI	ACCWGGT	1 cut(s)	244
MaeI	CTAG	2 cut(s)	138, 444
MaeII	ACGT	1 cut(s)	407
MluCI	AATT	2 cut(s)	417, 475
MmeI	TCCRAC	1 cut(s)	390
MnlI	CCTC	8 cut(s)	71, 148, 160, 282, 294, 300, 381, 465
MroXI	GAANNNNTTC	1 cut(s)	182
MslI	CAYNNNNRTG	1 cut(s)	69
MspI	CCGG	1 cut(s)	175
MspR9I	CCNGG	1 cut(s)	246
Mva1269I	GAATGC	1 cut(s)	148
MvaI	CCWGG	1 cut(s)	246
NlaIII	CATG	3 cut(s)	68, 433, 470
NspI	RCATGY	1 cut(s)	433
PceI	AGGCCT	1 cut(s)	170
PciI	ACATGT	1 cut(s)	429
PctI	GAATGC	1 cut(s)	148
PdmI	GAANNNNTTC	1 cut(s)	182
PfeI	GAWTC	1 cut(s)	124
PflMI	CCANNNNNTGG	1 cut(s)	21
PscI	ACATGT	1 cut(s)	429
Psp6I	CCWGG	1 cut(s)	244
PspGI	CCWGG	1 cut(s)	244
PstI	CTGCAG	1 cut(s)	114
RseI	CAYNNNNRTG	1 cut(s)	69
ScrFI	CCNGG	1 cut(s)	246
SetI	ASST	6 cut(s)	97, 194, 205, 247, 410, 489
SexAI	ACCWGGT	1 cut(s)	244
SfaNI	GCATC	1 cut(s)	139
SfcI	CTRYAG	1 cut(s)	110
SmiMI	CAYNNNNRTG	1 cut(s)	69
Sse9I	AATT	2 cut(s)	417, 475
SseBI	AGGCCT	1 cut(s)	170
SsiI	CCGC	1 cut(s)	331
SspMI	CTAG	2 cut(s)	138, 444
StuI	AGGCCT	1 cut(s)	170
StyD4I	CCNGG	1 cut(s)	244
TaiI	ACGT	1 cut(s)	410
TaqI	TCGA	2 cut(s)	37, 186
TasI	AATT	2 cut(s)	417, 475
TfiI	GAWTC	1 cut(s)	124
TscAI	CASTG	1 cut(s)	135
TspDTI	ATGAA	1 cut(s)	287
TspRI	CASTG	1 cut(s)	135
Van91I	CCANNNNNTGG	1 cut(s)	21
XapI	RAATTY	2 cut(s)	417, 475
XceI	RCATGY	1 cut(s)	433
XmnI	GAANNNNTTC	1 cut(s)	182
XspI	CTAG	2 cut(s)	138, 444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.