Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0021418

Physical Location & Seq

Genomic Coordinates Forward (+)

8962127 .. 8962498

Gene Structure 372 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG108600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGCTCCCGAAAGGGTTGAAAAAACTTGACGCGTTAGTTTGCTCGGTTGGAGTGATGGTGATGGTGCATGGAGATGACAGACGGTTGGTAATGCCACCTAAAGTGGCAACTCTGCAGGCTATTGTGATTCCAGTGATTTCTAGGAATGCTGATGCAGAAGCCATATTGGAGGCCTGCCGGAAAACTTTAGACACCTTGAAAAAAGCCGGTTTTCGTGTCAAGGCAGATTTGAGTAGAAACCCTACACCTGGTCAGAAGTATTGGCATTGGGAGATGAAGGGTGTTCCTCTGAGGATTGAAATAGGACAGAAATCAAGTGCGGTTTGTTCGTCGGGACAAGTCCGAAAAAGTGGACATTCCTCTGAACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004827 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006433 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016874 GO:0016875 GO:0017101 GO:0019538 GO:0019752 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0055044 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon ProRS-C_1 tRNA-synt_2b

Protein Analysis

123

Amino Acids

13.46

Weight (kDa)

9.84

Isoelectric Point (pI)

41.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HGTP_anticodon	PF03129	39 - 105	9.7e-14	Anticodon binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0021418)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0012941
rosa_multiflora	Rmu_sc0006885.1_g000006
rosa_samantha	Rh5AG099700 Rh5CG108600 Rh5DG095100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	32
AciI	CCGC	1 cut(s)	320
AfiI	CCNNNNNNNGG	1 cut(s)	248
AflIII	ACRYGT	1 cut(s)	30
AgsI	TTSAA	3 cut(s)	19, 199, 299
AjnI	CCWGG	1 cut(s)	247
AoxI	GGCC	1 cut(s)	171
AsuHPI	GGTGA	1 cut(s)	70
BccI	CCATC	2 cut(s)	49, 55
BciT130I	CCWGG	1 cut(s)	249
BfaI	CTAG	1 cut(s)	141
BfmI	CTRYAG	1 cut(s)	113
Bme1390I	CCNGG	1 cut(s)	249
BmrFI	CCNGG	1 cut(s)	249
BmsI	GCATC	1 cut(s)	142
BsaXI	ACNNNNNCTCC	2 cut(s)	42, 72
Bsc4I	CCNNNNNNNGG	1 cut(s)	248
Bse118I	RCCGGY	1 cut(s)	206
Bse1I	ACTGG	1 cut(s)	131
BseBI	CCWGG	1 cut(s)	249
BseLI	CCNNNNNNNGG	1 cut(s)	248
BseMII	CTCAG	1 cut(s)	281
BseNI	ACTGG	1 cut(s)	131
Bsh1236I	CGCG	1 cut(s)	32
BshFI	GGCC	1 cut(s)	173
BsiSI	CCGG	2 cut(s)	178, 207
BslFI	GGGAC	1 cut(s)	348
BslI	CCNNNNNNNGG	1 cut(s)	248
BsmFI	GGGAC	1 cut(s)	348
BsmI	GAATGC	1 cut(s)	151
BsnI	GGCC	1 cut(s)	173
BspACI	CCGC	1 cut(s)	320
BspANI	GGCC	1 cut(s)	173
BspCNI	CTCAG	1 cut(s)	282
BspFNI	CGCG	1 cut(s)	32
BspMAI	CTGCAG	1 cut(s)	117
BsrFI	RCCGGY	1 cut(s)	206
BsrI	ACTGG	1 cut(s)	131
BssAI	RCCGGY	1 cut(s)	206
Bst2UI	CCWGG	1 cut(s)	249
Bst4CI	ACNGT	1 cut(s)	84
BstC8I	GCNNGC	2 cut(s)	117, 175
BstDEI	CTNAG	1 cut(s)	290
BstFNI	CGCG	1 cut(s)	32
BstNI	CCWGG	1 cut(s)	249
BstSCI	CCNGG	1 cut(s)	247
BstSFI	CTRYAG	1 cut(s)	113
BstUI	CGCG	1 cut(s)	32
BsuRI	GGCC	1 cut(s)	173
BtsIMutI	CAGTG	1 cut(s)	138
Cac8I	GCNNGC	2 cut(s)	117, 175
Cfr10I	RCCGGY	1 cut(s)	206
CseI	GACGC	1 cut(s)	38
CsiI	ACCWGGT	1 cut(s)	247
CviAII	CATG	1 cut(s)	68
CviJI	RGCY	4 cut(s)	119, 161, 173, 206
CviKI_1	RGCY	4 cut(s)	119, 161, 173, 206
DdeI	CTNAG	1 cut(s)	290
Eco147I	AGGCCT	1 cut(s)	173
EcoRII	CCWGG	1 cut(s)	247
FaeI	CATG	1 cut(s)	71
FaiI	YATR	2 cut(s)	69, 164
FaqI	GGGAC	1 cut(s)	348
FatI	CATG	1 cut(s)	67
FspBI	CTAG	1 cut(s)	141
HaeIII	GGCC	1 cut(s)	173
HapII	CCGG	2 cut(s)	178, 207
HgaI	GACGC	1 cut(s)	38
Hin1II	CATG	1 cut(s)	71
HinfI	GANTC	1 cut(s)	127
HpaII	CCGG	2 cut(s)	178, 207
HphI	GGTGA	1 cut(s)	70
Hpy166II	GTNNAC	1 cut(s)	353
Hpy188I	TCNGA	4 cut(s)	255, 291, 344, 364
Hpy188III	TCNNGA	2 cut(s)	7, 333
Hpy8I	GTNNAC	1 cut(s)	353
Hpy99I	CGWCG	1 cut(s)	334
HpyAV	CCTTC	1 cut(s)	271
HpyCH4III	ACNGT	1 cut(s)	84
HpyCH4V	TGCA	3 cut(s)	67, 115, 155
HpyF3I	CTNAG	1 cut(s)	290
Hsp92II	CATG	1 cut(s)	71
LmnI	GCTCC	1 cut(s)	9
LpnPI	CCDG	7 cut(s)	101, 144, 187, 191, 220, 234, 261
LweI	GCATC	1 cut(s)	142
MabI	ACCWGGT	1 cut(s)	247
MaeI	CTAG	1 cut(s)	141
MluI	ACGCGT	1 cut(s)	30
MmeI	TCCRAC	1 cut(s)	28
MnlI	CCTC	4 cut(s)	163, 285, 297, 370
MslI	CAYNNNNRTG	1 cut(s)	72
MspI	CCGG	2 cut(s)	178, 207
MspR9I	CCNGG	1 cut(s)	249
Mva1269I	GAATGC	1 cut(s)	151
MvaI	CCWGG	1 cut(s)	249
MvnI	CGCG	1 cut(s)	32
NlaIII	CATG	1 cut(s)	71
PceI	AGGCCT	1 cut(s)	173
PctI	GAATGC	1 cut(s)	151
PfeI	GAWTC	1 cut(s)	127
Psp6I	CCWGG	1 cut(s)	247
PspGI	CCWGG	1 cut(s)	247
PstI	CTGCAG	1 cut(s)	117
RseI	CAYNNNNRTG	1 cut(s)	72
ScrFI	CCNGG	1 cut(s)	249
SetI	ASST	3 cut(s)	100, 197, 250
SexAI	ACCWGGT	1 cut(s)	247
SfaNI	GCATC	1 cut(s)	142
SfcI	CTRYAG	1 cut(s)	113
SmiMI	CAYNNNNRTG	1 cut(s)	72
SseBI	AGGCCT	1 cut(s)	173
SsiI	CCGC	1 cut(s)	320
SspMI	CTAG	1 cut(s)	141
StuI	AGGCCT	1 cut(s)	173
StyD4I	CCNGG	1 cut(s)	247
TaaI	ACNGT	1 cut(s)	84
TfiI	GAWTC	1 cut(s)	127
TscAI	CASTG	1 cut(s)	138
TspDTI	ATGAA	1 cut(s)	290
TspRI	CASTG	1 cut(s)	138
XspI	CTAG	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.