Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0021418

Physical Location & Seq

Genomic Coordinates Forward (+)

8721565 .. 8721957

Gene Structure 393 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG095100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGTTTGACATCACGTTTGAGAATGAAATGCAAGAAAAGGCCAACTCTTGGGCTTACACCACTCGAACGATTGGAGTGATGGTGATGGTGCATGGAGATGACAAAGGGTTGGTAATGCCACCTAAAGTGGCAACTCTGCAGGCTATTGTGATTCCAGTGATTTCTAAGAATGCTGATGCAGAAGCCATATTGGAGGCCTGCCGGAAAACTTTAGACACCTTGAAAAAATCCGGTTTTCGTGTCAAGGCAGGTTTGAGTAGAAACTCTACACCTGGTCAGAAGTATTGGCATTGGGAGATGAAGGGTGTTCCTCTGAGGATTGAAATAGGACAGAGGGATTTGGACAGAAATCAAGTGCGGGGGACAAGTCCGAAAAAGTGGACATTCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004827 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006433 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016874 GO:0016875 GO:0017101 GO:0019538 GO:0019752 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0055044 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon ProRS-C_1 tRNA-synt_2b

Protein Analysis

130

Amino Acids

14.73

Weight (kDa)

9.63

Isoelectric Point (pI)

29.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HGTP_anticodon	PF03129	47 - 119	4.7e-14	Anticodon binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0021418)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0012941
rosa_multiflora	Rmu_sc0006885.1_g000006
rosa_samantha	Rh5AG099700 Rh5CG108600 Rh5DG095100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	239
AccB7I	CCANNNNNTGG	1 cut(s)	48
AciI	CCGC	1 cut(s)	358
AfiI	CCNNNNNNNGG	1 cut(s)	48
AgsI	TTSAA	2 cut(s)	223, 323
AjnI	CCWGG	1 cut(s)	271
AoxI	GGCC	2 cut(s)	39, 195
ArsI	GACNNNNNNTTYG	1 cut(s)	31
AsuHPI	GGTGA	1 cut(s)	94
BccI	CCATC	2 cut(s)	73, 79
BciT130I	CCWGG	1 cut(s)	273
BfmI	CTRYAG	1 cut(s)	137
BfuAI	ACCTGC	1 cut(s)	239
Bme1390I	CCNGG	1 cut(s)	273
BmrFI	CCNGG	1 cut(s)	273
BmsI	GCATC	1 cut(s)	166
BsaWI	WCCGGW	1 cut(s)	230
BsaXI	ACNNNNNCTCC	2 cut(s)	66, 96
Bsc4I	CCNNNNNNNGG	1 cut(s)	48
Bse1I	ACTGG	1 cut(s)	155
BseBI	CCWGG	1 cut(s)	273
BseLI	CCNNNNNNNGG	1 cut(s)	48
BseMII	CTCAG	1 cut(s)	305
BseNI	ACTGG	1 cut(s)	155
BshFI	GGCC	2 cut(s)	41, 197
BsiSI	CCGG	2 cut(s)	202, 231
BslFI	GGGAC	1 cut(s)	376
BslI	CCNNNNNNNGG	1 cut(s)	48
BsmFI	GGGAC	1 cut(s)	376
BsmI	GAATGC	1 cut(s)	175
BsnI	GGCC	2 cut(s)	41, 197
BspACI	CCGC	1 cut(s)	358
BspANI	GGCC	2 cut(s)	41, 197
BspCNI	CTCAG	1 cut(s)	306
BspMAI	CTGCAG	1 cut(s)	141
BspMI	ACCTGC	1 cut(s)	239
BsrI	ACTGG	1 cut(s)	155
Bst2UI	CCWGG	1 cut(s)	273
BstC8I	GCNNGC	2 cut(s)	141, 199
BstDEI	CTNAG	2 cut(s)	165, 314
BstNI	CCWGG	1 cut(s)	273
BstSCI	CCNGG	1 cut(s)	271
BstSFI	CTRYAG	1 cut(s)	137
BsuRI	GGCC	2 cut(s)	41, 197
BtsIMutI	CAGTG	1 cut(s)	162
BveI	ACCTGC	1 cut(s)	239
Cac8I	GCNNGC	2 cut(s)	141, 199
CsiI	ACCWGGT	1 cut(s)	271
CviAII	CATG	1 cut(s)	92
CviJI	RGCY	5 cut(s)	41, 53, 143, 185, 197
CviKI_1	RGCY	5 cut(s)	41, 53, 143, 185, 197
DdeI	CTNAG	2 cut(s)	165, 314
Eco147I	AGGCCT	1 cut(s)	197
EcoRII	CCWGG	1 cut(s)	271
FaeI	CATG	1 cut(s)	95
FaiI	YATR	2 cut(s)	93, 188
FaqI	GGGAC	1 cut(s)	376
FatI	CATG	1 cut(s)	91
FauI	CCCGC	1 cut(s)	351
HaeIII	GGCC	2 cut(s)	41, 197
HapII	CCGG	2 cut(s)	202, 231
Hin1II	CATG	1 cut(s)	95
HinfI	GANTC	1 cut(s)	151
HpaII	CCGG	2 cut(s)	202, 231
HphI	GGTGA	1 cut(s)	94
Hpy166II	GTNNAC	1 cut(s)	381
Hpy188I	TCNGA	4 cut(s)	279, 315, 372, 392
Hpy8I	GTNNAC	1 cut(s)	381
HpyAV	CCTTC	1 cut(s)	295
HpyCH4IV	ACGT	1 cut(s)	14
HpyCH4V	TGCA	4 cut(s)	31, 91, 139, 179
HpyF3I	CTNAG	2 cut(s)	165, 314
HpySE526I	ACGT	1 cut(s)	14
Hsp92II	CATG	1 cut(s)	95
LpnPI	CCDG	8 cut(s)	125, 168, 211, 215, 234, 244, 258, 285
LweI	GCATC	1 cut(s)	166
MabI	ACCWGGT	1 cut(s)	271
MaeII	ACGT	1 cut(s)	14
MnlI	CCTC	4 cut(s)	187, 309, 321, 327
MslI	CAYNNNNRTG	1 cut(s)	96
MspI	CCGG	2 cut(s)	202, 231
MspR9I	CCNGG	1 cut(s)	273
Mva1269I	GAATGC	1 cut(s)	175
MvaI	CCWGG	1 cut(s)	273
NlaIII	CATG	1 cut(s)	95
PceI	AGGCCT	1 cut(s)	197
PctI	GAATGC	1 cut(s)	175
PfeI	GAWTC	1 cut(s)	151
PflMI	CCANNNNNTGG	1 cut(s)	48
Psp6I	CCWGG	1 cut(s)	271
PspGI	CCWGG	1 cut(s)	271
PstI	CTGCAG	1 cut(s)	141
RseI	CAYNNNNRTG	1 cut(s)	96
ScrFI	CCNGG	1 cut(s)	273
SetI	ASST	5 cut(s)	17, 124, 221, 253, 274
SexAI	ACCWGGT	1 cut(s)	271
SfaNI	GCATC	1 cut(s)	166
SfcI	CTRYAG	1 cut(s)	137
SmiMI	CAYNNNNRTG	1 cut(s)	96
SseBI	AGGCCT	1 cut(s)	197
SsiI	CCGC	1 cut(s)	358
StuI	AGGCCT	1 cut(s)	197
StyD4I	CCNGG	1 cut(s)	271
TaiI	ACGT	1 cut(s)	17
TaqI	TCGA	1 cut(s)	64
TfiI	GAWTC	1 cut(s)	151
TscAI	CASTG	1 cut(s)	162
TspDTI	ATGAA	2 cut(s)	39, 314
TspRI	CASTG	1 cut(s)	162
Van91I	CCANNNNNTGG	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.