Rmu_sc0006888.1_g000047

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006888.1
OG0025531
Physical Location & Seq
Forward (+)
203868 .. 207839
3972 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006888.1_g000047.1.cds

Sequence Viewer

Length: 336 bp
atggccctgatcaggtacgttgacccccgtcacttgggtactaagattgggctcgctacccaacaccctctactccttgcagctccccctcaacaaataatttaccgactatccggaggtccgtcttggctggggagtgggggactccatggcgggcctagcaggggcccacccgaaaggatcaactccgatctggacgagcttgtcgagaaggccctgctcttgcagaccctcgaagaggccgtcgacagctacaacatcaccatcttcgctccccgaagcaacgccgtcgaccgcgaccttgaactcggcaacctaaaagctctacttgcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

111

Amino Acids

11.97

Weight (kDa)

5.84

Isoelectric Point (pI)

35.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025531)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002310.1_g000004 Rmu_sc0006888.1_g000047 Rmu_sc0012564.1_g000004

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 203
AccI GTMKAC 2 cut(s) 246, 291
AccII CGCG 1 cut(s) 297
AccIII TCCGGA 1 cut(s) 113
AciI CCGC 2 cut(s) 153, 295
AclWI GGATC 1 cut(s) 188
AfaI GTAC 2 cut(s) 17, 40
AfiI CCNNNNNNNGG 4 cut(s) 12, 34, 164, 238
AgsI TTSAA 1 cut(s) 305
AluBI AGCT 4 cut(s) 83, 202, 252, 323
AluI AGCT 4 cut(s) 83, 202, 252, 323
AlwI GGATC 1 cut(s) 188
Aor13HI TCCGGA 1 cut(s) 113
AoxI GGCC 5 cut(s) 3, 155, 166, 213, 240
ApaI GGGCCC 1 cut(s) 170
ApeKI GCWGC 1 cut(s) 80
ArsI GACNNNNNNTTYG 2 cut(s) 228, 260
AspS9I GGNCC 6 cut(s) 4, 119, 155, 166, 167, 214
AsuHPI GGTGA 1 cut(s) 253
AvaII GGWCC 1 cut(s) 119
BaeGI GKGCMC 1 cut(s) 170
BanII GRGCYC 2 cut(s) 54, 170
BbvI GCAGC 1 cut(s) 92
BccI CCATC 1 cut(s) 272
BceAI ACGGC 2 cut(s) 227, 272
BcgI CGANNNNNNTGC 2 cut(s) 271, 305
BclI TGATCA 1 cut(s) 9
BfaI CTAG 1 cut(s) 159
BisI GCNGC 1 cut(s) 81
BlsI GCNGC 1 cut(s) 82
Bme18I GGWCC 1 cut(s) 119
BmgT120I GGNCC 6 cut(s) 4, 119, 155, 166, 167, 214
BmiI GGNNCC 2 cut(s) 167, 168
BoxI GACNNNNGTC 1 cut(s) 27
BsaJI CCNNGG 1 cut(s) 148
BsaWI WCCGGW 1 cut(s) 113
Bsc4I CCNNNNNNNGG 4 cut(s) 12, 34, 164, 238
BseAI TCCGGA 1 cut(s) 113
BseDI CCNNGG 1 cut(s) 148
BseLI CCNNNNNNNGG 4 cut(s) 12, 34, 164, 238
BseSI GKGCMC 1 cut(s) 170
BseXI GCAGC 1 cut(s) 92
BseYI CCCAGC 1 cut(s) 130
Bsh1236I CGCG 1 cut(s) 297
Bsh1285I CGRYCG 1 cut(s) 295
BshFI GGCC 5 cut(s) 5, 157, 168, 215, 242
BsiEI CGRYCG 1 cut(s) 295
BsiSI CCGG 1 cut(s) 114
BslFI GGGAC 1 cut(s) 156
BslI CCNNNNNNNGG 4 cut(s) 12, 34, 164, 238
BsmFI GGGAC 1 cut(s) 156
BsnI GGCC 5 cut(s) 5, 157, 168, 215, 242
Bsp120I GGGCCC 1 cut(s) 166
Bsp1286I GDGCHC 2 cut(s) 54, 170
Bsp13I TCCGGA 1 cut(s) 113
Bsp143I GATC 3 cut(s) 9, 180, 190
Bsp19I CCATGG 1 cut(s) 148
BspACI CCGC 2 cut(s) 153, 295
BspANI GGCC 5 cut(s) 5, 157, 168, 215, 242
BspEI TCCGGA 1 cut(s) 113
BspFNI CGCG 1 cut(s) 297
BspLI GGNNCC 2 cut(s) 167, 168
BspPI GGATC 1 cut(s) 188
BssECI CCNNGG 1 cut(s) 148
BssMI GATC 3 cut(s) 9, 180, 190
BssT1I CCWWGG 1 cut(s) 148
Bst6I CTCTTC 1 cut(s) 231
BstC8I GCNNGC 2 cut(s) 54, 155
BstDEI CTNAG 1 cut(s) 42
BstDSI CCRYGG 1 cut(s) 148
BstENI CCTNNNNNAGG 1 cut(s) 236
BstFNI CGCG 1 cut(s) 297
BstKTI GATC 3 cut(s) 12, 183, 193
BstMBI GATC 3 cut(s) 9, 180, 190
BstMCI CGRYCG 1 cut(s) 295
BstMWI GCNNNNNNNGC 2 cut(s) 159, 329
BstPAI GACNNNNGTC 1 cut(s) 27
BstSLI GKGCMC 1 cut(s) 170
BstUI CGCG 1 cut(s) 297
BstV1I GCAGC 1 cut(s) 92
BsuRI GGCC 5 cut(s) 5, 157, 168, 215, 242
BtgI CCRYGG 1 cut(s) 148
Cac8I GCNNGC 2 cut(s) 54, 155
Cfr13I GGNCC 6 cut(s) 4, 119, 155, 166, 167, 214
Csp6I GTAC 2 cut(s) 16, 39
CviAII CATG 1 cut(s) 149
CviQI GTAC 2 cut(s) 16, 39
DdeI CTNAG 1 cut(s) 42
DpnI GATC 3 cut(s) 11, 182, 192
DpnII GATC 3 cut(s) 9, 180, 190
DrdI GACNNNNNNGTC 1 cut(s) 203
DseDI GACNNNNNNGTC 1 cut(s) 203
Eam1104I CTCTTC 1 cut(s) 231
EarI CTCTTC 1 cut(s) 231
Eco130I CCWWGG 1 cut(s) 148
Eco24I GRGCYC 2 cut(s) 54, 170
Eco47I GGWCC 1 cut(s) 119
EcoNI CCTNNNNNAGG 1 cut(s) 236
EcoO109I RGGNCCY 2 cut(s) 166, 214
EcoT14I CCWWGG 1 cut(s) 148
EcoT38I GRGCYC 2 cut(s) 54, 170
ErhI CCWWGG 1 cut(s) 148
FaeI CATG 1 cut(s) 152
FaiI YATR 1 cut(s) 150
FalI AAGNNNNNCTT 1 cut(s) 312
FaqI GGGAC 1 cut(s) 156
FatI CATG 1 cut(s) 148
FauI CCCGC 1 cut(s) 146
FbaI TGATCA 1 cut(s) 9
FblI GTMKAC 2 cut(s) 246, 291
Fnu4HI GCNGC 1 cut(s) 81
FriOI GRGCYC 2 cut(s) 54, 170
Fsp4HI GCNGC 1 cut(s) 81
FspBI CTAG 1 cut(s) 159
GluI GCNGC 1 cut(s) 81
GsaI CCCAGC 1 cut(s) 134
HaeIII GGCC 5 cut(s) 5, 157, 168, 215, 242
HapII CCGG 1 cut(s) 114
Hin1II CATG 1 cut(s) 152
HincII GTYRAC 3 cut(s) 22, 247, 292
HindII GTYRAC 3 cut(s) 22, 247, 292
HinfI GANTC 1 cut(s) 144
HpaII CCGG 1 cut(s) 114
HphI GGTGA 1 cut(s) 253
Hpy166II GTNNAC 3 cut(s) 22, 247, 292
Hpy188I TCNGA 1 cut(s) 190
Hpy188III TCNNGA 3 cut(s) 114, 194, 208
Hpy8I GTNNAC 3 cut(s) 22, 247, 292
Hpy99I CGWCG 2 cut(s) 248, 293
HpyAV CCTTC 1 cut(s) 205
HpyCH4IV ACGT 1 cut(s) 18
HpyCH4V TGCA 2 cut(s) 80, 226
HpyF10VI GCNNNNNNNGC 2 cut(s) 159, 329
HpyF3I CTNAG 1 cut(s) 42
HpySE526I ACGT 1 cut(s) 18
Hsp92II CATG 1 cut(s) 152
Kpn2I TCCGGA 1 cut(s) 113
Ksp22I TGATCA 1 cut(s) 9
Kzo9I GATC 3 cut(s) 9, 180, 190
LmnI GCTCC 2 cut(s) 88, 277
LpnPI CCDG 6 cut(s) 20, 116, 127, 148, 179, 230
Lsp1109I GCAGC 1 cut(s) 92
MaeI CTAG 1 cut(s) 159
MaeII ACGT 1 cut(s) 18
MaeIII GTNAC 1 cut(s) 29
MalI GATC 3 cut(s) 11, 182, 192
MboI GATC 3 cut(s) 9, 180, 190
MboII GAAGA 2 cut(s) 248, 259
MhlI GDGCHC 2 cut(s) 54, 170
MluCI AATT 1 cut(s) 99
MlyI GAGTC 1 cut(s) 138
MnlI CCTC 5 cut(s) 78, 99, 110, 232, 242
MroI TCCGGA 1 cut(s) 113
MspI CCGG 1 cut(s) 114
MvnI CGCG 1 cut(s) 297
MwoI GCNNNNNNNGC 2 cut(s) 159, 329
NcoI CCATGG 1 cut(s) 148
NdeII GATC 3 cut(s) 9, 180, 190
NlaIII CATG 1 cut(s) 152
NlaIV GGNNCC 2 cut(s) 167, 168
NmeAIII GCCGAG 1 cut(s) 288
NmuCI GTSAC 1 cut(s) 29
PcsI WCGNNNNNNNCGW 2 cut(s) 204, 240
PkrI GCNGC 1 cut(s) 82
PleI GAGTC 1 cut(s) 138
PpsI GAGTC 1 cut(s) 138
PshAI GACNNNNGTC 1 cut(s) 27
PspFI CCCAGC 1 cut(s) 130
PspN4I GGNNCC 2 cut(s) 167, 168
PspOMI GGGCCC 1 cut(s) 166
PspPI GGNCC 6 cut(s) 4, 119, 155, 166, 167, 214
RsaI GTAC 2 cut(s) 17, 40
RsaNI GTAC 2 cut(s) 16, 39
SalI GTCGAC 2 cut(s) 245, 290
SatI GCNGC 1 cut(s) 81
Sau3AI GATC 3 cut(s) 9, 180, 190
Sau96I GGNCC 6 cut(s) 4, 119, 155, 166, 167, 214
SchI GAGTC 1 cut(s) 138
SduI GDGCHC 2 cut(s) 54, 170
SetI ASST 9 cut(s) 17, 21, 85, 121, 204, 254, 303, 318, 325
SinI GGWCC 1 cut(s) 119
Sse9I AATT 1 cut(s) 99
SsiI CCGC 2 cut(s) 153, 295
SspMI CTAG 1 cut(s) 159
StyI CCWWGG 1 cut(s) 148
TaiI ACGT 1 cut(s) 21
TaqI TCGA 4 cut(s) 207, 234, 246, 291
TasI AATT 1 cut(s) 99
TseFI GTSAC 1 cut(s) 29
TseI GCWGC 1 cut(s) 80
Tsp45I GTSAC 1 cut(s) 29
TspGWI ACGGA 1 cut(s) 111
VpaK11BI GGWCC 1 cut(s) 119
XagI CCTNNNNNAGG 1 cut(s) 236
XmiI GTMKAC 2 cut(s) 246, 291
XspI CTAG 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.