Rmu_sc0012564.1_g000004

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012564.1
OG0025531
Physical Location & Seq
Reverse (-)
9341 .. 11462
2122 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012564.1_g000004.1.cds

Sequence Viewer

Length: 996 bp
atgccaaagattatctcagtagctcacatgtgcactacactagcttgcaaagctcaggcgttaacacagcccacggcagccattgatcctgcagttaaccccgacgcttgggtaccaaagattgggctcgctacccaacaccctctgctctgtgcagctccccctcaacaaacaatttaccgaccatccggaggtcagtcgtggctggggagtgagggactccctggcaggcctagcaggggcccacccgaaagggcaagagccctcagcggcatccacgagcttccactcaagccttcgcggcacccacgagcttaccgctcactccttcgcggtatccacgagcttccgctcacgagatttctgctcacgccttcgcggcacccacgagcttccgctcatgccttagcggcaccctcgagcttccgctcaggagctttcctctcacgagcttaccgctcaagccttcgcggcacccacgagctttccgctcacgccttagcggcacccccgagcttccgctcacgagcttaccactcaggagctttcctctcatgccttcgcggcacccccgagcctaacgctcacgccttcgcggcaccgccgagcttaccgctcatgccttcccggcacccccgagcttccgctcatgccttcccggcaacccacgagcttaccgctcatgccttcccggcacccccgagcttccgctcatgccttcccggcacccccgagcttcctgctcatgccttcccggcaacccacgagcttccgctcatgccttcctggcacccccgagcttcctctcatgccttctcggcacccccgagcttcccgctcatgccttccctgcacccccgagcttcccgctcatgccttcccggaaacccacgagcttccgctcatgccttcccggcacccccgagcttcccgctcatgccttcccggcaaccctcgagctttacactcatgtctactcgacacactacacgttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

331

Amino Acids

35.5

Weight (kDa)

11.52

Isoelectric Point (pI)

72.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025531)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002310.1_g000004 Rmu_sc0006888.1_g000047 Rmu_sc0012564.1_g000004

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 112
AccB7I CCANNNNNTGG 1 cut(s) 122
AccI GTMKAC 1 cut(s) 974
AccII CGCG 6 cut(s) 301, 333, 379, 471, 564, 596
AccIII TCCGGA 1 cut(s) 188
AclWI GGATC 1 cut(s) 80
AfaI GTAC 1 cut(s) 114
AfiI CCNNNNNNNGG 4 cut(s) 108, 122, 191, 239
AflIII ACRYGT 2 cut(s) 27, 989
AjnI CCWGG 2 cut(s) 223, 785
Alw21I GWGCWC 1 cut(s) 35
Alw44I GTGCAC 1 cut(s) 31
AlwI GGATC 1 cut(s) 80
Aor13HI TCCGGA 1 cut(s) 188
AoxI GGCC 2 cut(s) 230, 241
ApaI GGGCCC 1 cut(s) 245
ApaLI GTGCAC 1 cut(s) 31
ApeKI GCWGC 2 cut(s) 77, 155
Asp718I GGTACC 1 cut(s) 112
AspS9I GGNCC 2 cut(s) 241, 242
AsuC2I CCSGG 8 cut(s) 628, 659, 692, 723, 755, 882, 914, 946
BaeGI GKGCMC 2 cut(s) 35, 245
BanII GRGCYC 3 cut(s) 129, 245, 265
Bbv12I GWGCWC 1 cut(s) 35
BbvCI CCTCAGC 1 cut(s) 266
BbvI GCAGC 2 cut(s) 89, 167
BccI CCATC 1 cut(s) 193
BceAI ACGGC 1 cut(s) 90
BcgI CGANNNNNNTGC 4 cut(s) 346, 380, 722, 756
BciT130I CCWGG 2 cut(s) 225, 787
BciVI GTATCC 1 cut(s) 347
BcnI CCSGG 8 cut(s) 628, 659, 692, 723, 755, 882, 914, 946
BfaI CTAG 2 cut(s) 41, 234
BfmI CTRYAG 1 cut(s) 90
BfuI GTATCC 1 cut(s) 347
BmgT120I GGNCC 2 cut(s) 241, 242
BmsI GCATC 1 cut(s) 282
BplI GAGNNNNNCTC 4 cut(s) 426, 458, 534, 566
Bpu10I CCTNAGC 5 cut(s) 54, 266, 406, 430, 499
BpuEI CTTGAG 2 cut(s) 275, 445
BpuMI CCSGG 8 cut(s) 628, 659, 692, 723, 755, 882, 914, 946
BsaJI CCNNGG 2 cut(s) 72, 223
BsaWI WCCGGW 1 cut(s) 188
Bsc4I CCNNNNNNNGG 4 cut(s) 108, 122, 191, 239
BseAI TCCGGA 1 cut(s) 188
BseBI CCWGG 2 cut(s) 225, 787
BseDI CCNNGG 2 cut(s) 72, 223
BseGI GGATG 2 cut(s) 185, 273
BseLI CCNNNNNNNGG 4 cut(s) 108, 122, 191, 239
BseMII CTCAG 5 cut(s) 30, 68, 280, 444, 552
BseSI GKGCMC 2 cut(s) 35, 245
BseXI GCAGC 2 cut(s) 89, 167
BseYI CCCAGC 1 cut(s) 205
BsgI GTGCAG 2 cut(s) 174, 836
Bsh1236I CGCG 6 cut(s) 301, 333, 379, 471, 564, 596
BshFI GGCC 2 cut(s) 232, 243
BsiHKAI GWGCWC 1 cut(s) 35
BsiSI CCGG 9 cut(s) 189, 628, 659, 692, 723, 755, 882, 914, 946
BslFI GGGAC 1 cut(s) 231
BslI CCNNNNNNNGG 4 cut(s) 108, 122, 191, 239
BsmFI GGGAC 1 cut(s) 231
BsnI GGCC 2 cut(s) 232, 243
Bsp120I GGGCCC 1 cut(s) 241
Bsp1286I GDGCHC 4 cut(s) 35, 129, 245, 265
Bsp13I TCCGGA 1 cut(s) 188
Bsp143I GATC 1 cut(s) 85
BspANI GGCC 2 cut(s) 232, 243
BspCNI CTCAG 5 cut(s) 29, 67, 279, 443, 551
BspEI TCCGGA 1 cut(s) 188
BspFNI CGCG 6 cut(s) 301, 333, 379, 471, 564, 596
BspMAI CTGCAG 1 cut(s) 94
BspPI GGATC 1 cut(s) 80
BssECI CCNNGG 2 cut(s) 72, 223
BssMI GATC 1 cut(s) 85
Bst2UI CCWGG 2 cut(s) 225, 787
BstC8I GCNNGC 3 cut(s) 46, 129, 230
BstDEI CTNAG 7 cut(s) 16, 54, 266, 406, 430, 499, 538
BstDSI CCRYGG 1 cut(s) 72
BstF5I GGATG 2 cut(s) 185, 273
BstFNI CGCG 6 cut(s) 301, 333, 379, 471, 564, 596
BstKTI GATC 1 cut(s) 88
BstMBI GATC 1 cut(s) 85
BstNI CCWGG 2 cut(s) 225, 787
BstNSI RCATGY 1 cut(s) 31
BstSFI CTRYAG 1 cut(s) 90
BstSLI GKGCMC 2 cut(s) 35, 245
BstUI CGCG 6 cut(s) 301, 333, 379, 471, 564, 596
BstV1I GCAGC 2 cut(s) 89, 167
BsuI GTATCC 1 cut(s) 347
BsuRI GGCC 2 cut(s) 232, 243
BtgI CCRYGG 1 cut(s) 72
BtsCI GGATG 2 cut(s) 185, 273
Cac8I GCNNGC 3 cut(s) 46, 129, 230
Cfr13I GGNCC 2 cut(s) 241, 242
CseI GACGC 1 cut(s) 113
Csp6I GTAC 1 cut(s) 113
CviQI GTAC 1 cut(s) 113
DdeI CTNAG 7 cut(s) 16, 54, 266, 406, 430, 499, 538
DpnI GATC 1 cut(s) 87
DpnII GATC 1 cut(s) 85
Eco147I AGGCCT 1 cut(s) 232
Eco24I GRGCYC 3 cut(s) 129, 245, 265
EcoO109I RGGNCCY 1 cut(s) 241
EcoRII CCWGG 2 cut(s) 223, 785
EcoT38I GRGCYC 3 cut(s) 129, 245, 265
FaqI GGGAC 1 cut(s) 231
FauI CCCGC 3 cut(s) 843, 875, 939
FblI GTMKAC 1 cut(s) 974
FokI GGATG 2 cut(s) 172, 260
FriOI GRGCYC 3 cut(s) 129, 245, 265
FspBI CTAG 2 cut(s) 41, 234
GsaI CCCAGC 1 cut(s) 209
HaeIII GGCC 2 cut(s) 232, 243
HapII CCGG 9 cut(s) 189, 628, 659, 692, 723, 755, 882, 914, 946
HgaI GACGC 1 cut(s) 113
HincII GTYRAC 2 cut(s) 63, 97
HindII GTYRAC 2 cut(s) 63, 97
HinfI GANTC 1 cut(s) 219
HpaI GTTAAC 2 cut(s) 63, 97
HpaII CCGG 9 cut(s) 189, 628, 659, 692, 723, 755, 882, 914, 946
Hpy166II GTNNAC 4 cut(s) 33, 63, 97, 975
Hpy188III TCNNGA 6 cut(s) 189, 355, 432, 447, 525, 540
Hpy8I GTNNAC 4 cut(s) 33, 63, 97, 975
Hpy99I CGWCG 1 cut(s) 107
HpyCH4IV ACGT 1 cut(s) 991
HpyCH4V TGCA 5 cut(s) 33, 48, 92, 155, 853
HpyF3I CTNAG 7 cut(s) 16, 54, 266, 406, 430, 499, 538
HpySE526I ACGT 1 cut(s) 991
Kpn2I TCCGGA 1 cut(s) 188
KpnI GGTACC 1 cut(s) 116
KspAI GTTAAC 2 cut(s) 63, 97
Kzo9I GATC 1 cut(s) 85
LmnI GCTCC 3 cut(s) 163, 434, 542
Lsp1109I GCAGC 2 cut(s) 89, 167
LweI GCATC 1 cut(s) 282
MaeI CTAG 2 cut(s) 41, 234
MaeII ACGT 1 cut(s) 991
MalI GATC 1 cut(s) 87
MboI GATC 1 cut(s) 85
MhlI GDGCHC 4 cut(s) 35, 129, 245, 265
MluCI AATT 1 cut(s) 174
MlyI GAGTC 1 cut(s) 213
MroI TCCGGA 1 cut(s) 188
MseI TTAA 3 cut(s) 62, 96, 994
MspA1I CMGCKG 1 cut(s) 270
MspI CCGG 9 cut(s) 189, 628, 659, 692, 723, 755, 882, 914, 946
MvaI CCWGG 2 cut(s) 225, 787
MvnI CGCG 6 cut(s) 301, 333, 379, 471, 564, 596
NciI CCSGG 8 cut(s) 628, 659, 692, 723, 755, 882, 914, 946
NdeII GATC 1 cut(s) 85
NmeAIII GCCGAG 2 cut(s) 630, 797
NspI RCATGY 1 cut(s) 31
PaeR7I CTCGAG 2 cut(s) 418, 955
PceI AGGCCT 1 cut(s) 232
PciI ACATGT 1 cut(s) 27
PcsI WCGNNNNNNNCGW 1 cut(s) 824
PflMI CCANNNNNTGG 1 cut(s) 122
PfoI TCCNGGA 1 cut(s) 880
PleI GAGTC 1 cut(s) 213
PpsI GAGTC 1 cut(s) 213
PscI ACATGT 1 cut(s) 27
Psp6I CCWGG 2 cut(s) 223, 785
PspFI CCCAGC 1 cut(s) 205
PspGI CCWGG 2 cut(s) 223, 785
PspOMI GGGCCC 1 cut(s) 241
PspPI GGNCC 2 cut(s) 241, 242
PspXI VCTCGAGB 2 cut(s) 418, 955
PstI CTGCAG 1 cut(s) 94
RsaI GTAC 1 cut(s) 114
RsaNI GTAC 1 cut(s) 113
SaqAI TTAA 3 cut(s) 62, 96, 994
Sau3AI GATC 1 cut(s) 85
Sau96I GGNCC 2 cut(s) 241, 242
SchI GAGTC 1 cut(s) 213
SduI GDGCHC 4 cut(s) 35, 129, 245, 265
SfaNI GCATC 1 cut(s) 282
SfcI CTRYAG 1 cut(s) 90
Sfr274I CTCGAG 2 cut(s) 418, 955
SlaI CTCGAG 2 cut(s) 418, 955
SmlI CTYRAG 4 cut(s) 290, 418, 460, 955
SmoI CTYRAG 4 cut(s) 290, 418, 460, 955
Sse9I AATT 1 cut(s) 174
SseBI AGGCCT 1 cut(s) 232
SspMI CTAG 2 cut(s) 41, 234
StuI AGGCCT 1 cut(s) 232
TaiI ACGT 1 cut(s) 994
TaqI TCGA 3 cut(s) 419, 956, 979
TasI AATT 1 cut(s) 174
TauI GCSGC 8 cut(s) 273, 304, 382, 413, 474, 506, 567, 599
Tru1I TTAA 3 cut(s) 62, 96, 994
Tru9I TTAA 3 cut(s) 62, 96, 994
TseI GCWGC 2 cut(s) 77, 155
Van91I CCANNNNNTGG 1 cut(s) 122
VneI GTGCAC 1 cut(s) 31
XceI RCATGY 1 cut(s) 31
XhoI CTCGAG 2 cut(s) 418, 955
XmiI GTMKAC 1 cut(s) 974
XspI CTAG 2 cut(s) 41, 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.