Rmu_sc0007328.1_g000009

Replication factor C subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007328.1
OG0015060
Physical Location & Seq
Reverse (-)
23016 .. 32356
9341 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1479 bp
atgtcgtcgtcttcttcgtcttccgcgtcggcctacgacatgccatgggtggagaagtacaggccgaacaaggtcggcgacatcgtcggcaacgaagacgccgtgtcgaggctccaggtcatcgcccgcgacggcaacatgcccaatctcatcttagccggtcctcctggaactggtaagaccactagtatacttgctcttgcacatgagcttttgggaccaaattatagggagggtgttttagagctgaatgcatctgatgacaggggaatagatgtggtgaggaacaagattaaaatgtttgctcaaaagaaagtaacacttcctcctgggcgccataaaattgtcatcttggatgaagctgacagcatgacatctggagcacaacaagctttgaggcggacaatggaaatatattcaaattccacgcggttcgctcttgcatgcaatacttcctccaaaatcattgagcctattcagagtagatgtgccctagtccgattttctagattatctgatcaggagatacttggtcgtctaatggttgtggtccaagctgaaaaggttccctatgttccagaaggtctggaagccatcatttttactgctgatggtgacatgaggcaggcattgaataacttgcaagctacaaacagtggattccggtttgtcaaccaagaaaatgttttcaaggtctgtgaccagcctcatccattgcatgtaaagaatatggttcgtaacatacttgaagggaaatttgacgacgcttgttcgggtctcaagcagctctatgatttgggctattcacccactgacataatcacaacttttttccgtatcattaaaaattatgatatggctgagtatttgaaactggaattcatgaaggaaactgggtttgctcacatgagaatctgcgatggagttggctcatatcttcagctgtgtggtcttctggctaagctttccctagtaggccatggaaatgggaaagaagcgttgaagaaggtatttgccaatggcgccaagatctaccctggtagaggcatcagattcatccgctccgattctcaggttttcctgttcgtgaattccaagtgcaagaggtacttccacaaccgcctcaagccgtccaagatcacatggactgccatgttcaggaagcagcacaagaaggactctgctcaagaatctgtgaagaagaagcgccgtgccaccaagaagccttactcaaggtccattgttggtgccactttggaggtcatccagaagaggaggaccgagaagcctgaggtccgtgacgctgctcgcgaggccgctctccgtgagattaaggagagaatcaagaagaccaaggatgagaagaaggcaaagaaagcagaaatcacagccaagtcaagcaagcctaccaagggtagtctgtccaaggctgcagcccccaagggccccaagcttggtggtggaggtggaaagcgatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0000723 GO:0000731 GO:0003674 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005657 GO:0005663 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006281 GO:0006283 GO:0006289 GO:0006296 GO:0006297 GO:0006301 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010556 GO:0010557 GO:0010604 GO:0016043 GO:0017076 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019725 GO:0019985 GO:0022402 GO:0030554 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031390 GO:0031974 GO:0031981 GO:0032200 GO:0032201 GO:0032553 GO:0032555 GO:0032559 GO:0032991 GO:0033260 GO:0033554 GO:0033683 GO:0034641 GO:0034645 GO:0034654 GO:0035639 GO:0036094 GO:0042276 GO:0042592 GO:0042769 GO:0043085 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0044786 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051276 GO:0051338 GO:0051347 GO:0051606 GO:0051716 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0070987 GO:0071704 GO:0071840 GO:0071897 GO:0080090 GO:0090304 GO:0090305 GO:0090329 GO:0097159 GO:0097367 GO:1900262 GO:1900264 GO:1901265 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:2000112 GO:2000278 GO:2000573
KEGG Pathways
Metabolic & Signaling
ko03030 ko03420 ko03430 map03030 map03420 map03430
Pfam Domains
Protein Families
AAA Rep_fac_C

Protein Analysis

492

Amino Acids

54.74

Weight (kDa)

9.9

Isoelectric Point (pI)

41.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_14 PF13173 49 - 150 5.7e-06 AAA domain
AAA PF00004 50 - 167 2.7e-13 ATPase family associated with various cellular activities (AAA)
DNA_pol3_delta2 PF13177 91 - 171 4.4e-08 DNA polymerase III, delta subunit
Rep_fac_C PF08542 236 - 321 1.9e-24 Replication factor C C-terminal domain
Ribosomal_L24e PF01246 341 - 396 1.1e-21 Ribosomal protein L24e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015060)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63160
fragaria_vesca FvH4_5g01730 FvH4_5g01730
malus_domestica MD04G1065200.v1.1
prunus_persica Prupe.8G039600_v2.0.a1
pyrus_communis pycom04g05880
rosa_chinensis RchiOBHm_Chr7g0198991
rosa_laevigata RLG00000003826
rosa_multiflora Rmu_sc0006266.1_g000025 Rmu_sc0007328.1_g000009
rosa_roxburghii Rroxscaffold_3G00257230
rosa_rugosa Rorug07G0052000
rosa_samantha Rh7AG175000 Rh7BG178200 Rh7DG177600
rosa_wichuraiana Rw7G015350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 333, 1022, 1247
AccBSI CCGCTC 2 cut(s) 1062, 1319
AccI GTMKAC 1 cut(s) 190
AccII CGCG 4 cut(s) 26, 129, 430, 1311
AciI CCGC 7 cut(s) 24, 127, 400, 430, 1060, 1120, 1317
AcsI RAATTY 4 cut(s) 421, 755, 878, 1090
AcuI CTGAAG 1 cut(s) 923
AcyI GRCGYC 3 cut(s) 99, 334, 1023
AfaI GTAC 2 cut(s) 59, 1109
AfiI CCNNNNNNNGG 6 cut(s) 108, 173, 1043, 1158, 1412, 1454
AgsI TTSAA 6 cut(s) 420, 634, 691, 749, 871, 1003
AhdI GACNNNNNGTC 1 cut(s) 103
AhlI ACTAGT 1 cut(s) 185
AjnI CCWGG 4 cut(s) 114, 166, 328, 1036
Alw21I GWGCWC 1 cut(s) 385
Alw26I GTCTC 1 cut(s) 782
AoxI GGCC 5 cut(s) 30, 62, 976, 1314, 1444
ApaI GGGCCC 1 cut(s) 1448
ApeKI GCWGC 5 cut(s) 784, 1165, 1304, 1430, 1433
ApoI RAATTY 4 cut(s) 421, 755, 878, 1090
Asp700I GAANNNNTTC 1 cut(s) 564
AspLEI GCGC 3 cut(s) 336, 1025, 1209
AspS9I GGNCC 8 cut(s) 161, 218, 550, 1236, 1278, 1294, 1444, 1445
AsuHPI GGTGA 3 cut(s) 292, 626, 798
AvaII GGWCC 6 cut(s) 161, 218, 550, 1236, 1278, 1294
AxyI CCTNAGG 1 cut(s) 1290
BaeGI GKGCMC 2 cut(s) 493, 1448
BanI GGYRCC 3 cut(s) 333, 1022, 1247
BanII GRGCYC 1 cut(s) 1448
BbsI GAAGAC 5 cut(s) 3, 12, 102, 944, 1355
Bbv12I GWGCWC 1 cut(s) 385
BbvI GCAGC 5 cut(s) 796, 1177, 1291, 1417, 1445
BccI CCATC 3 cut(s) 602, 605, 914
BceAI ACGGC 4 cut(s) 86, 148, 1114, 1194
BciT130I CCWGG 4 cut(s) 116, 168, 330, 1038
BclI TGATCA 1 cut(s) 517
BcoDI GTCTC 1 cut(s) 782
BcuI ACTAGT 1 cut(s) 185
BfaI CTAG 4 cut(s) 186, 494, 507, 971
BfmI CTRYAG 1 cut(s) 1431
BfoI RGCGCY 3 cut(s) 337, 1026, 1210
BglII AGATCT 1 cut(s) 1029
BisI GCNGC 6 cut(s) 785, 1166, 1305, 1317, 1431, 1434
BlpI GCTNAGC 1 cut(s) 960
BlsI GCNGC 6 cut(s) 786, 1167, 1306, 1318, 1432, 1435
Bme1390I CCNGG 4 cut(s) 116, 168, 330, 1038
Bme18I GGWCC 6 cut(s) 161, 218, 550, 1236, 1278, 1294
BmeRI GACNNNNNGTC 1 cut(s) 103
BmgT120I GGNCC 8 cut(s) 161, 218, 550, 1236, 1278, 1294, 1444, 1445
BmiI GGNNCC 8 cut(s) 113, 219, 335, 567, 1024, 1249, 1446, 1447
BmrFI CCNGG 4 cut(s) 116, 168, 330, 1038
BmrI ACTGGG 1 cut(s) 903
BmsI GCATC 2 cut(s) 263, 1056
BmuI ACTGGG 1 cut(s) 903
BpiI GAAGAC 5 cut(s) 3, 12, 102, 944, 1355
BpmI CTGGAG 2 cut(s) 98, 399
Bpu1102I GCTNAGC 1 cut(s) 960
BpuEI CTTGAG 4 cut(s) 764, 1109, 1170, 1216
BsaHI GRCGYC 3 cut(s) 99, 334, 1023
BsaI GGTCTC 1 cut(s) 782
BsaJI CCNNGG 8 cut(s) 44, 329, 979, 1036, 1353, 1410, 1425, 1440
BsaWI WCCGGW 1 cut(s) 663
BsaXI ACNNNNNCTCC 2 cut(s) 310, 340
Bsc4I CCNNNNNNNGG 6 cut(s) 108, 173, 1043, 1158, 1412, 1454
Bse118I RCCGGY 1 cut(s) 158
Bse1I ACTGG 3 cut(s) 178, 879, 898
Bse21I CCTNAGG 1 cut(s) 1290
Bse3DI GCAATG 1 cut(s) 713
BseBI CCWGG 4 cut(s) 116, 168, 330, 1038
BseDI CCNNGG 8 cut(s) 44, 329, 979, 1036, 1353, 1410, 1425, 1440
BseGI GGATG 5 cut(s) 361, 709, 1056, 1263, 1363
BseLI CCNNNNNNNGG 6 cut(s) 108, 173, 1043, 1158, 1412, 1454
BseMI GCAATG 1 cut(s) 713
BseMII CTCAG 3 cut(s) 852, 1085, 1281
BseNI ACTGG 3 cut(s) 178, 879, 898
BseRI GAGGAG 1 cut(s) 1288
BseSI GKGCMC 2 cut(s) 493, 1448
BseXI GCAGC 5 cut(s) 796, 1177, 1291, 1417, 1445
Bsh1236I CGCG 4 cut(s) 26, 129, 430, 1311
BshFI GGCC 5 cut(s) 32, 64, 978, 1316, 1446
BshNI GGYRCC 3 cut(s) 333, 1022, 1247
BsiHKAI GWGCWC 1 cut(s) 385
BsiSI CCGG 2 cut(s) 159, 664
BslFI GGGAC 1 cut(s) 231
BslI CCNNNNNNNGG 6 cut(s) 108, 173, 1043, 1158, 1412, 1454
BsmAI GTCTC 1 cut(s) 782
BsmFI GGGAC 1 cut(s) 231
BsmI GAATGC 1 cut(s) 256
BsnI GGCC 5 cut(s) 32, 64, 978, 1316, 1446
Bso31I GGTCTC 1 cut(s) 782
Bsp120I GGGCCC 1 cut(s) 1444
Bsp1286I GDGCHC 3 cut(s) 385, 493, 1448
Bsp143I GATC 3 cut(s) 517, 1029, 1137
Bsp1720I GCTNAGC 1 cut(s) 960
Bsp19I CCATGG 2 cut(s) 44, 979
Bsp68I TCGCGA 1 cut(s) 1311
BspACI CCGC 7 cut(s) 24, 127, 400, 430, 1060, 1120, 1317
BspANI GGCC 5 cut(s) 32, 64, 978, 1316, 1446
BspCNI CTCAG 3 cut(s) 853, 1084, 1282
BspFNI CGCG 4 cut(s) 26, 129, 430, 1311
BspHI TCATGA 1 cut(s) 882
BspLI GGNNCC 8 cut(s) 113, 219, 335, 567, 1024, 1249, 1446, 1447
BspMAI CTGCAG 1 cut(s) 1435
BspT107I GGYRCC 3 cut(s) 333, 1022, 1247
BspTNI GGTCTC 1 cut(s) 782
BsrBI CCGCTC 2 cut(s) 1062, 1319
BsrDI GCAATG 1 cut(s) 713
BsrFI RCCGGY 1 cut(s) 158
BsrI ACTGG 3 cut(s) 178, 879, 898
BssAI RCCGGY 1 cut(s) 158
BssECI CCNNGG 8 cut(s) 44, 329, 979, 1036, 1353, 1410, 1425, 1440
BssMI GATC 3 cut(s) 517, 1029, 1137
BssNAI GTATAC 1 cut(s) 191
BssNI GRCGYC 3 cut(s) 99, 334, 1023
BssT1I CCWWGG 6 cut(s) 44, 979, 1353, 1410, 1425, 1440
Bst1107I GTATAC 1 cut(s) 191
Bst2UI CCWGG 4 cut(s) 116, 168, 330, 1038
Bst4CI ACNGT 1 cut(s) 656
Bst6I CTCTTC 1 cut(s) 1265
BstACI GRCGYC 3 cut(s) 99, 334, 1023
BstC8I GCNNGC 6 cut(s) 127, 445, 627, 645, 1309, 1403
BstDEI CTNAG 5 cut(s) 154, 861, 960, 1071, 1290
BstDSI CCRYGG 2 cut(s) 44, 979
BstENI CCTNNNNNAGG 1 cut(s) 1041
BstF5I GGATG 5 cut(s) 361, 709, 1056, 1263, 1363
BstFNI CGCG 4 cut(s) 26, 129, 430, 1311
BstH2I RGCGCY 3 cut(s) 337, 1026, 1210
BstHHI GCGC 3 cut(s) 336, 1025, 1209
BstKTI GATC 3 cut(s) 520, 1032, 1140
BstMAI GTCTC 1 cut(s) 782
BstMBI GATC 3 cut(s) 517, 1029, 1137
BstMWI GCNNNNNNNGC 4 cut(s) 389, 1022, 1313, 1376
BstNI CCWGG 4 cut(s) 116, 168, 330, 1038
BstNSI RCATGY 4 cut(s) 43, 142, 447, 722
BstSCI CCNGG 4 cut(s) 114, 166, 328, 1036
BstSFI CTRYAG 1 cut(s) 1431
BstSLI GKGCMC 2 cut(s) 493, 1448
BstUI CGCG 4 cut(s) 26, 129, 430, 1311
BstV1I GCAGC 5 cut(s) 796, 1177, 1291, 1417, 1445
BstV2I GAAGAC 5 cut(s) 3, 12, 102, 944, 1355
BstX2I RGATCY 1 cut(s) 1029
BstXI CCANNNNNNTGG 1 cut(s) 986
BstYI RGATCY 1 cut(s) 1029
BstZ17I GTATAC 1 cut(s) 191
Bsu36I CCTNAGG 1 cut(s) 1290
BsuRI GGCC 5 cut(s) 32, 64, 978, 1316, 1446
BtgI CCRYGG 2 cut(s) 44, 979
BtgZI GCGATG 2 cut(s) 106, 933
BtsCI GGATG 5 cut(s) 361, 709, 1056, 1263, 1363
BtsIMutI CAGTG 2 cut(s) 661, 810
BtuMI TCGCGA 1 cut(s) 1311
Cac8I GCNNGC 6 cut(s) 127, 445, 627, 645, 1309, 1403
CciI TCATGA 1 cut(s) 882
CfoI GCGC 3 cut(s) 336, 1025, 1209
Cfr10I RCCGGY 1 cut(s) 158
Cfr13I GGNCC 8 cut(s) 161, 218, 550, 1236, 1278, 1294, 1444, 1445
CseI GACGC 4 cut(s) 15, 107, 773, 1310
Csp6I GTAC 2 cut(s) 58, 1108
CspCI CAANNNNNGTGG 2 cut(s) 1438, 1473
CviQI GTAC 2 cut(s) 58, 1108
DdeI CTNAG 5 cut(s) 154, 861, 960, 1071, 1290
DinI GGCGCC 2 cut(s) 335, 1024
DpnI GATC 3 cut(s) 519, 1031, 1139
DpnII GATC 3 cut(s) 517, 1029, 1137
DriI GACNNNNNGTC 1 cut(s) 103
Eam1104I CTCTTC 1 cut(s) 1265
Eam1105I GACNNNNNGTC 1 cut(s) 103
EarI CTCTTC 1 cut(s) 1265
EciI GGCGGA 1 cut(s) 415
Eco130I CCWWGG 6 cut(s) 44, 979, 1353, 1410, 1425, 1440
Eco24I GRGCYC 1 cut(s) 1448
Eco31I GGTCTC 1 cut(s) 782
Eco47I GGWCC 6 cut(s) 161, 218, 550, 1236, 1278, 1294
Eco57I CTGAAG 1 cut(s) 923
Eco81I CCTNAGG 1 cut(s) 1290
EcoNI CCTNNNNNAGG 1 cut(s) 1041
EcoO109I RGGNCCY 2 cut(s) 1444, 1445
EcoRI GAATTC 2 cut(s) 878, 1090
EcoRII CCWGG 4 cut(s) 114, 166, 328, 1036
EcoT14I CCWWGG 6 cut(s) 44, 979, 1353, 1410, 1425, 1440
EcoT22I ATGCAT 1 cut(s) 256
EcoT38I GRGCYC 1 cut(s) 1448
EgeI GGCGCC 2 cut(s) 335, 1024
EheI GGCGCC 2 cut(s) 335, 1024
ErhI CCWWGG 6 cut(s) 44, 979, 1353, 1410, 1425, 1440
FalI AAGNNNNNCTT 4 cut(s) 306, 338, 1094, 1126
FaqI GGGAC 1 cut(s) 231
FauI CCCGC 1 cut(s) 134
FbaI TGATCA 1 cut(s) 517
FblI GTMKAC 1 cut(s) 190
Fnu4HI GCNGC 6 cut(s) 785, 1166, 1305, 1317, 1431, 1434
FokI GGATG 5 cut(s) 368, 696, 1043, 1250, 1370
FriOI GRGCYC 1 cut(s) 1448
Fsp4HI GCNGC 6 cut(s) 785, 1166, 1305, 1317, 1431, 1434
FspBI CTAG 4 cut(s) 186, 494, 507, 971
GlaI GCGC 3 cut(s) 335, 1024, 1208
GluI GCNGC 6 cut(s) 785, 1166, 1305, 1317, 1431, 1434
GsuI CTGGAG 2 cut(s) 98, 399
HaeII RGCGCY 3 cut(s) 337, 1026, 1210
HaeIII GGCC 5 cut(s) 32, 64, 978, 1316, 1446
HapII CCGG 2 cut(s) 159, 664
HgaI GACGC 4 cut(s) 15, 107, 773, 1310
HhaI GCGC 3 cut(s) 336, 1025, 1209
Hin1I GRCGYC 3 cut(s) 99, 334, 1023
Hin6I GCGC 3 cut(s) 334, 1023, 1207
HinP1I GCGC 3 cut(s) 334, 1023, 1207
HincII GTYRAC 1 cut(s) 673
HindII GTYRAC 1 cut(s) 673
HindIII AAGCTT 3 cut(s) 390, 962, 1451
HinfI GANTC 7 cut(s) 660, 912, 1053, 1067, 1178, 1190, 1341
HpaII CCGG 2 cut(s) 159, 664
HphI GGTGA 3 cut(s) 292, 626, 798
Hpy166II GTNNAC 2 cut(s) 191, 673
Hpy188I TCNGA 6 cut(s) 259, 480, 500, 517, 1052, 1066
Hpy8I GTNNAC 2 cut(s) 191, 673
Hpy99I CGWCG 5 cut(s) 10, 31, 89, 134, 767
HpyAV CCTTC 6 cut(s) 575, 743, 880, 1000, 1168, 1360
HpyCH4III ACNGT 1 cut(s) 656
HpyCH4V TGCA 8 cut(s) 203, 254, 443, 447, 643, 718, 1101, 1433
HpyF10VI GCNNNNNNNGC 4 cut(s) 389, 1022, 1313, 1376
HpyF3I CTNAG 5 cut(s) 154, 861, 960, 1071, 1290
Hsp92I GRCGYC 3 cut(s) 99, 334, 1023
HspAI GCGC 3 cut(s) 334, 1023, 1207
KasI GGCGCC 2 cut(s) 333, 1022
Ksp22I TGATCA 1 cut(s) 517
Kzo9I GATC 3 cut(s) 517, 1029, 1137
LmnI GCTCC 3 cut(s) 117, 380, 1067
Lsp1109I GCAGC 5 cut(s) 796, 1177, 1291, 1417, 1445
LweI GCATC 2 cut(s) 263, 1056
MaeI CTAG 4 cut(s) 186, 494, 507, 971
MaeIII GTNAC 5 cut(s) 316, 614, 698, 737, 1298
MalI GATC 3 cut(s) 519, 1031, 1139
MbiI CCGCTC 2 cut(s) 1062, 1319
MboI GATC 3 cut(s) 517, 1029, 1137
MflI RGATCY 1 cut(s) 1029
MhlI GDGCHC 3 cut(s) 385, 493, 1448
MluCI AATT 7 cut(s) 223, 342, 421, 755, 847, 878, 1090
Mly113I GGCGCC 2 cut(s) 334, 1023
MlyI GAGTC 1 cut(s) 1172
Mph1103I ATGCAT 1 cut(s) 256
MroXI GAANNNNTTC 1 cut(s) 564
MseI TTAA 3 cut(s) 294, 843, 1332
MslI CAYNNNNRTG 1 cut(s) 984
MspA1I CMGCKG 1 cut(s) 943
MspI CCGG 2 cut(s) 159, 664
MspR9I CCNGG 4 cut(s) 116, 168, 330, 1038
Mva1269I GAATGC 1 cut(s) 256
MvaI CCWGG 4 cut(s) 116, 168, 330, 1038
MvnI CGCG 4 cut(s) 26, 129, 430, 1311
MwoI GCNNNNNNNGC 4 cut(s) 389, 1022, 1313, 1376
NarI GGCGCC 2 cut(s) 334, 1023
NcoI CCATGG 2 cut(s) 44, 979
NdeII GATC 3 cut(s) 517, 1029, 1137
NlaIV GGNNCC 8 cut(s) 113, 219, 335, 567, 1024, 1249, 1446, 1447
NmuCI GTSAC 3 cut(s) 614, 698, 1298
NruI TCGCGA 1 cut(s) 1311
NsiI ATGCAT 1 cut(s) 256
NspI RCATGY 4 cut(s) 43, 142, 447, 722
PaeI GCATGC 1 cut(s) 447
PagI TCATGA 1 cut(s) 882
PcsI WCGNNNNNNNCGW 6 cut(s) 14, 23, 81, 90, 99, 1308
PctI GAATGC 1 cut(s) 256
PdmI GAANNNNTTC 1 cut(s) 564
PfeI GAWTC 6 cut(s) 660, 912, 1053, 1067, 1190, 1341
PflFI GACNNNGTC 1 cut(s) 83
PfoI TCCNGGA 1 cut(s) 166
PkrI GCNGC 6 cut(s) 786, 1167, 1306, 1318, 1432, 1435
PleI GAGTC 1 cut(s) 1172
PluTI GGCGCC 2 cut(s) 337, 1026
PpsI GAGTC 1 cut(s) 1172
Psp6I CCWGG 4 cut(s) 114, 166, 328, 1036
PspGI CCWGG 4 cut(s) 114, 166, 328, 1036
PspN4I GGNNCC 8 cut(s) 113, 219, 335, 567, 1024, 1249, 1446, 1447
PspOMI GGGCCC 1 cut(s) 1444
PspPI GGNCC 8 cut(s) 161, 218, 550, 1236, 1278, 1294, 1444, 1445
PstI CTGCAG 1 cut(s) 1435
PsuI RGATCY 1 cut(s) 1029
PsyI GACNNNGTC 1 cut(s) 83
PvuII CAGCTG 1 cut(s) 943
RruI TCGCGA 1 cut(s) 1311
RsaI GTAC 2 cut(s) 59, 1109
RsaNI GTAC 2 cut(s) 58, 1108
RseI CAYNNNNRTG 1 cut(s) 984
SaqAI TTAA 3 cut(s) 294, 843, 1332
SatI GCNGC 6 cut(s) 785, 1166, 1305, 1317, 1431, 1434
Sau3AI GATC 3 cut(s) 517, 1029, 1137
Sau96I GGNCC 8 cut(s) 161, 218, 550, 1236, 1278, 1294, 1444, 1445
SchI GAGTC 1 cut(s) 1172
ScrFI CCNGG 4 cut(s) 116, 168, 330, 1038
SduI GDGCHC 3 cut(s) 385, 493, 1448
SfaNI GCATC 2 cut(s) 263, 1056
SfcI CTRYAG 1 cut(s) 1431
SfoI GGCGCC 2 cut(s) 335, 1024
SinI GGWCC 6 cut(s) 161, 218, 550, 1236, 1278, 1294
SmiMI CAYNNNNRTG 1 cut(s) 984
SmlI CTYRAG 4 cut(s) 779, 1124, 1185, 1231
SmoI CTYRAG 4 cut(s) 779, 1124, 1185, 1231
SpeI ACTAGT 1 cut(s) 185
SphI GCATGC 1 cut(s) 447
Sse9I AATT 7 cut(s) 223, 342, 421, 755, 847, 878, 1090
SsiI CCGC 7 cut(s) 24, 127, 400, 430, 1060, 1120, 1317
SspDI GGCGCC 2 cut(s) 333, 1022
SspMI CTAG 4 cut(s) 186, 494, 507, 971
StyD4I CCNGG 4 cut(s) 114, 166, 328, 1036
StyI CCWWGG 6 cut(s) 44, 979, 1353, 1410, 1425, 1440
TaaI ACNGT 1 cut(s) 656
TaqI TCGA 1 cut(s) 107
TaqII GACCGA 1 cut(s) 1295
TasI AATT 7 cut(s) 223, 342, 421, 755, 847, 878, 1090
TatI WGTACW 1 cut(s) 57
TauI GCSGC 1 cut(s) 1319
TfiI GAWTC 6 cut(s) 660, 912, 1053, 1067, 1190, 1341
Tru1I TTAA 3 cut(s) 294, 843, 1332
Tru9I TTAA 3 cut(s) 294, 843, 1332
TscAI CASTG 2 cut(s) 661, 817
TseFI GTSAC 3 cut(s) 614, 698, 1298
TseI GCWGC 5 cut(s) 784, 1165, 1304, 1430, 1433
Tsp45I GTSAC 3 cut(s) 614, 698, 1298
TspDTI ATGAA 4 cut(s) 372, 871, 899, 1045
TspGWI ACGGA 3 cut(s) 824, 1286, 1313
TspRI CASTG 2 cut(s) 661, 817
Tth111I GACNNNGTC 1 cut(s) 83
VpaK11BI GGWCC 6 cut(s) 161, 218, 550, 1236, 1278, 1294
XagI CCTNNNNNAGG 1 cut(s) 1041
XapI RAATTY 4 cut(s) 421, 755, 878, 1090
XbaI TCTAGA 1 cut(s) 506
XceI RCATGY 4 cut(s) 43, 142, 447, 722
XmiI GTMKAC 1 cut(s) 190
XmnI GAANNNNTTC 1 cut(s) 564
XspI CTAG 4 cut(s) 186, 494, 507, 971
Zsp2I ATGCAT 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.