Rmu_sc0007406.1_g000004

Amino-acid acetyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007406.1
OG0021110
Physical Location & Seq
Forward (+)
10250 .. 11909
1660 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007406.1_g000004.1.cds

Sequence Viewer

Length: 474 bp
atggctagggtgtcggacctctctggaataagacaaatcatacaacctttagaagcagctggcacattggttacgagaactgacgaagagctacttgaagcattggattcttatgttgttgtcgaaagagaaggtcaaattattgcatgtgctgctctttttcctttccaagaggagaaatgtgcagaggtggctgctattgcagtttctccggattgccgtggacaaggacaaggagataaattgcttgattacatggagaagaaggcatcttctcttggactggaaaagcttttcttgctaacaacccgaactgcagattggtttaagagacgtggattttctgaatgttcaattgaatcaataccagagaagcggagggaaaagattaatctatcccgtagatccaagtattatatgaagcagctgttacctgatacgagcggaattactgttgatagggtgttctcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00220 ko01100 ko01110 ko01130 ko01210 ko01230 map00220 map01100 map01110 map01130 map01210 map01230
Pfam Domains
Protein Families
AA_kinase Acetyltransf_1

Protein Analysis

157

Amino Acids

17.65

Weight (kDa)

5.68

Isoelectric Point (pI)

56.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021110)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g16532
rosa_multiflora Rmu_sc0007406.1_g000004 Rmu_sc0013358.1_g000005
rosa_samantha Rh1AG118100 Rh1CG113000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 444
AccIII TCCGGA 1 cut(s) 211
AciI CCGC 2 cut(s) 376, 444
AclWI GGATC 1 cut(s) 399
AgsI TTSAA 3 cut(s) 98, 354, 359
AjiI CACGTC 1 cut(s) 335
AjuI GAANNNNNNNTTGG 2 cut(s) 304, 336
AluBI AGCT 4 cut(s) 59, 91, 292, 427
AluI AGCT 4 cut(s) 59, 91, 292, 427
Alw26I GTCTC 1 cut(s) 325
AlwI GGATC 1 cut(s) 399
Aor13HI TCCGGA 1 cut(s) 211
ApeKI GCWGC 4 cut(s) 56, 152, 194, 424
AseI ATTAAT 1 cut(s) 390
AspS9I GGNCC 1 cut(s) 16
AvaII GGWCC 1 cut(s) 16
BbvI GCAGC 4 cut(s) 68, 139, 181, 436
BceAI ACGGC 1 cut(s) 204
BcoDI GTCTC 1 cut(s) 325
BfaI CTAG 1 cut(s) 6
BfmI CTRYAG 1 cut(s) 315
BisI GCNGC 4 cut(s) 57, 153, 195, 425
BlsI GCNGC 4 cut(s) 58, 154, 196, 426
Bme18I GGWCC 1 cut(s) 16
BmgBI CACGTC 1 cut(s) 335
BmgT120I GGNCC 1 cut(s) 16
BmsI GCATC 1 cut(s) 278
BsaJI CCNNGG 1 cut(s) 220
BsaWI WCCGGW 1 cut(s) 211
Bse1I ACTGG 1 cut(s) 288
BseAI TCCGGA 1 cut(s) 211
BseDI CCNNGG 1 cut(s) 220
BseNI ACTGG 1 cut(s) 288
BseRI GAGGAG 1 cut(s) 188
BseXI GCAGC 4 cut(s) 68, 139, 181, 436
BsgI GTGCAG 1 cut(s) 204
BsiSI CCGG 1 cut(s) 212
BsmAI GTCTC 1 cut(s) 325
BsmBI CGTCTC 1 cut(s) 325
Bsp13I TCCGGA 1 cut(s) 211
Bsp143I GATC 1 cut(s) 404
BspACI CCGC 2 cut(s) 376, 444
BspEI TCCGGA 1 cut(s) 211
BspMAI CTGCAG 1 cut(s) 319
BspPI GGATC 1 cut(s) 399
BspQI GCTCTTC 1 cut(s) 81
BsrBI CCGCTC 1 cut(s) 444
BsrI ACTGG 1 cut(s) 288
BssECI CCNNGG 1 cut(s) 220
BssMI GATC 1 cut(s) 404
Bst4CI ACNGT 1 cut(s) 454
Bst6I CTCTTC 1 cut(s) 81
BstAPI GCANNNNNTGC 1 cut(s) 152
BstC8I GCNNGC 1 cut(s) 61
BstDSI CCRYGG 1 cut(s) 220
BstKTI GATC 1 cut(s) 407
BstMAI GTCTC 1 cut(s) 325
BstMBI GATC 1 cut(s) 404
BstMWI GCNNNNNNNGC 4 cut(s) 152, 191, 200, 298
BstNSI RCATGY 1 cut(s) 150
BstSFI CTRYAG 1 cut(s) 315
BstV1I GCAGC 4 cut(s) 68, 139, 181, 436
BstX2I RGATCY 1 cut(s) 404
BstYI RGATCY 1 cut(s) 404
BtgI CCRYGG 1 cut(s) 220
BtrI CACGTC 1 cut(s) 335
Cac8I GCNNGC 1 cut(s) 61
Cfr13I GGNCC 1 cut(s) 16
CviAII CATG 2 cut(s) 147, 256
CviJI RGCY 6 cut(s) 5, 59, 91, 194, 292, 427
CviKI_1 RGCY 6 cut(s) 5, 59, 91, 194, 292, 427
DpnI GATC 1 cut(s) 406
DpnII GATC 1 cut(s) 404
Eam1104I CTCTTC 1 cut(s) 81
EarI CTCTTC 1 cut(s) 81
Eco47I GGWCC 1 cut(s) 16
Esp3I CGTCTC 1 cut(s) 325
FaeI CATG 2 cut(s) 150, 259
FaiI YATR 6 cut(s) 41, 114, 148, 257, 417, 419
FalI AAGNNNNNCTT 4 cut(s) 78, 110, 281, 313
FatI CATG 2 cut(s) 146, 255
Fnu4HI GCNGC 4 cut(s) 57, 153, 195, 425
Fsp4HI GCNGC 4 cut(s) 57, 153, 195, 425
FspBI CTAG 1 cut(s) 6
GluI GCNGC 4 cut(s) 57, 153, 195, 425
HapII CCGG 1 cut(s) 212
Hin1II CATG 2 cut(s) 150, 259
HindIII AAGCTT 1 cut(s) 290
HinfI GANTC 2 cut(s) 107, 359
HpaII CCGG 1 cut(s) 212
Hpy166II GTNNAC 1 cut(s) 224
Hpy188I TCNGA 2 cut(s) 16, 346
Hpy188III TCNNGA 3 cut(s) 24, 212, 471
Hpy8I GTNNAC 1 cut(s) 224
HpyAV CCTTC 2 cut(s) 125, 259
HpyCH4III ACNGT 1 cut(s) 454
HpyCH4IV ACGT 1 cut(s) 334
HpyCH4V TGCA 4 cut(s) 146, 185, 203, 317
HpyF10VI GCNNNNNNNGC 4 cut(s) 152, 191, 200, 298
HpySE526I ACGT 1 cut(s) 334
Hsp92II CATG 2 cut(s) 150, 259
Kpn2I TCCGGA 1 cut(s) 211
Kzo9I GATC 1 cut(s) 404
LguI GCTCTTC 1 cut(s) 81
LpnPI CCDG 6 cut(s) 9, 45, 225, 269, 381, 447
Lsp1109I GCAGC 4 cut(s) 68, 139, 181, 436
LweI GCATC 1 cut(s) 278
MaeI CTAG 1 cut(s) 6
MaeII ACGT 1 cut(s) 334
MaeIII GTNAC 2 cut(s) 70, 429
MalI GATC 1 cut(s) 406
MbiI CCGCTC 1 cut(s) 444
MboI GATC 1 cut(s) 404
MboII GAAGA 3 cut(s) 98, 264, 274
MfeI CAATTG 1 cut(s) 354
MflI RGATCY 1 cut(s) 404
MluCI AATT 4 cut(s) 138, 242, 354, 447
MnlI CCTC 4 cut(s) 29, 166, 181, 372
MroI TCCGGA 1 cut(s) 211
MseI TTAA 2 cut(s) 327, 390
MspA1I CMGCKG 2 cut(s) 59, 427
MspI CCGG 1 cut(s) 212
MunI CAATTG 1 cut(s) 354
MwoI GCNNNNNNNGC 4 cut(s) 152, 191, 200, 298
NdeII GATC 1 cut(s) 404
NlaIII CATG 2 cut(s) 150, 259
NspI RCATGY 1 cut(s) 150
PciSI GCTCTTC 1 cut(s) 81
PfeI GAWTC 2 cut(s) 107, 359
PkrI GCNGC 4 cut(s) 58, 154, 196, 426
PshBI ATTAAT 1 cut(s) 390
PspPI GGNCC 1 cut(s) 16
PstI CTGCAG 1 cut(s) 319
PsuI RGATCY 1 cut(s) 404
PvuII CAGCTG 2 cut(s) 59, 427
SapI GCTCTTC 1 cut(s) 81
SaqAI TTAA 2 cut(s) 327, 390
SatI GCNGC 4 cut(s) 57, 153, 195, 425
Sau3AI GATC 1 cut(s) 404
Sau96I GGNCC 1 cut(s) 16
SfaNI GCATC 1 cut(s) 278
SfcI CTRYAG 1 cut(s) 315
SinI GGWCC 1 cut(s) 16
Sse9I AATT 4 cut(s) 138, 242, 354, 447
SsiI CCGC 2 cut(s) 376, 444
SspMI CTAG 1 cut(s) 6
TaaI ACNGT 1 cut(s) 454
TaiI ACGT 1 cut(s) 337
TaqI TCGA 1 cut(s) 123
TasI AATT 4 cut(s) 138, 242, 354, 447
TfiI GAWTC 2 cut(s) 107, 359
Tru1I TTAA 2 cut(s) 327, 390
Tru9I TTAA 2 cut(s) 327, 390
TseI GCWGC 4 cut(s) 56, 152, 194, 424
TspDTI ATGAA 1 cut(s) 434
VpaK11BI GGWCC 1 cut(s) 16
VspI ATTAAT 1 cut(s) 390
XceI RCATGY 1 cut(s) 150
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.