Rh1CG113000

Amino-acid acetyltransferase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
Physical Location & Seq
Reverse (-)
22756838 .. 22757362
525 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG113000.1

Sequence Viewer

Length: 288 bp
ATGGCTAGGGTGACGGACCTCTCTGGAATAAGACAAATCATACAACCTTTAGAAGCAGCTGACACATTGGTTACGAGAACTGACGAAGAGCTACTTGAAGCATTGGATTCTTATGTTGTTGTCGAAAGAGAAGGTCAAATTATTGCATGTGCTGCTCTTTTTCCTTTCCAAGAGGAGAAATGTGCAGAGGTGGCTGCTATTGCAGTTTCTCCTGATTGCCGTGGACAAGGACAAGGAGATAAATTGCTTGGTGATTATAATAACATTGGCTGCAGAATTTGTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

95

Amino Acids

10.33

Weight (kDa)

4.31

Isoelectric Point (pI)

35.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acetyltransf_1 PF00583 30 - 83 1.5e-10 Acetyltransferase (GNAT) family
Acetyltransf_7 PF13508 37 - 84 3.1e-09 Acetyltransferase (GNAT) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0021110)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g16532
rosa_multiflora Rmu_sc0007406.1_g000004 Rmu_sc0013358.1_g000005
rosa_samantha Rh1AG118100 Rh1CG113000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 258
AcsI RAATTY 1 cut(s) 276
AgsI TTSAA 1 cut(s) 98
AluBI AGCT 2 cut(s) 59, 91
AluI AGCT 2 cut(s) 59, 91
ApeKI GCWGC 4 cut(s) 56, 152, 194, 270
ApoI RAATTY 1 cut(s) 276
AspS9I GGNCC 1 cut(s) 16
AsuHPI GGTGA 2 cut(s) 22, 263
AvaII GGWCC 1 cut(s) 16
BbvI GCAGC 4 cut(s) 68, 139, 181, 257
BceAI ACGGC 1 cut(s) 204
BfaI CTAG 1 cut(s) 6
BfmI CTRYAG 1 cut(s) 271
BisI GCNGC 4 cut(s) 57, 153, 195, 271
BlsI GCNGC 4 cut(s) 58, 154, 196, 272
Bme18I GGWCC 1 cut(s) 16
BmgT120I GGNCC 1 cut(s) 16
BsaJI CCNNGG 1 cut(s) 220
BseDI CCNNGG 1 cut(s) 220
BseRI GAGGAG 1 cut(s) 188
BseXI GCAGC 4 cut(s) 68, 139, 181, 257
BsgI GTGCAG 1 cut(s) 204
BspMAI CTGCAG 1 cut(s) 275
BspQI GCTCTTC 1 cut(s) 81
BssECI CCNNGG 1 cut(s) 220
Bst6I CTCTTC 1 cut(s) 81
BstAPI GCANNNNNTGC 1 cut(s) 152
BstDSI CCRYGG 1 cut(s) 220
BstMWI GCNNNNNNNGC 3 cut(s) 152, 191, 200
BstNSI RCATGY 1 cut(s) 150
BstSFI CTRYAG 1 cut(s) 271
BstV1I GCAGC 4 cut(s) 68, 139, 181, 257
BtgI CCRYGG 1 cut(s) 220
Cfr13I GGNCC 1 cut(s) 16
CviAII CATG 1 cut(s) 147
CviJI RGCY 5 cut(s) 5, 59, 91, 194, 270
CviKI_1 RGCY 5 cut(s) 5, 59, 91, 194, 270
Eam1104I CTCTTC 1 cut(s) 81
EarI CTCTTC 1 cut(s) 81
Eco47I GGWCC 1 cut(s) 16
FaeI CATG 1 cut(s) 150
FaiI YATR 4 cut(s) 41, 114, 148, 258
FalI AAGNNNNNCTT 2 cut(s) 78, 110
FatI CATG 1 cut(s) 146
Fnu4HI GCNGC 4 cut(s) 57, 153, 195, 271
Fsp4HI GCNGC 4 cut(s) 57, 153, 195, 271
FspBI CTAG 1 cut(s) 6
GluI GCNGC 4 cut(s) 57, 153, 195, 271
Hin1II CATG 1 cut(s) 150
HinfI GANTC 1 cut(s) 107
HphI GGTGA 2 cut(s) 22, 263
Hpy166II GTNNAC 1 cut(s) 224
Hpy188III TCNNGA 2 cut(s) 24, 212
Hpy8I GTNNAC 1 cut(s) 224
HpyAV CCTTC 1 cut(s) 125
HpyCH4V TGCA 4 cut(s) 146, 185, 203, 273
HpyF10VI GCNNNNNNNGC 3 cut(s) 152, 191, 200
Hsp92II CATG 1 cut(s) 150
LguI GCTCTTC 1 cut(s) 81
LpnPI CCDG 2 cut(s) 9, 225
Lsp1109I GCAGC 4 cut(s) 68, 139, 181, 257
MaeI CTAG 1 cut(s) 6
MaeIII GTNAC 2 cut(s) 10, 70
MboII GAAGA 1 cut(s) 98
MluCI AATT 3 cut(s) 138, 242, 276
MnlI CCTC 3 cut(s) 29, 166, 181
MspA1I CMGCKG 1 cut(s) 59
MwoI GCNNNNNNNGC 3 cut(s) 152, 191, 200
NlaIII CATG 1 cut(s) 150
NmuCI GTSAC 1 cut(s) 10
NspI RCATGY 1 cut(s) 150
PciSI GCTCTTC 1 cut(s) 81
PfeI GAWTC 1 cut(s) 107
PkrI GCNGC 4 cut(s) 58, 154, 196, 272
PsiI TTATAA 1 cut(s) 258
PspPI GGNCC 1 cut(s) 16
PstI CTGCAG 1 cut(s) 275
PvuII CAGCTG 1 cut(s) 59
SapI GCTCTTC 1 cut(s) 81
SatI GCNGC 4 cut(s) 57, 153, 195, 271
Sau96I GGNCC 1 cut(s) 16
SetI ASST 6 cut(s) 21, 49, 61, 93, 136, 192
SfcI CTRYAG 1 cut(s) 271
SinI GGWCC 1 cut(s) 16
Sse9I AATT 3 cut(s) 138, 242, 276
SspMI CTAG 1 cut(s) 6
TaqI TCGA 1 cut(s) 123
TasI AATT 3 cut(s) 138, 242, 276
TfiI GAWTC 1 cut(s) 107
TseFI GTSAC 1 cut(s) 10
TseI GCWGC 4 cut(s) 56, 152, 194, 270
Tsp45I GTSAC 1 cut(s) 10
TspGWI ACGGA 1 cut(s) 29
VpaK11BI GGWCC 1 cut(s) 16
XapI RAATTY 1 cut(s) 276
XceI RCATGY 1 cut(s) 150
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.