Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007475.1

Orthogroup ID

OG0025617

Physical Location & Seq

Genomic Coordinates Forward (+)

24886 .. 25467

Gene Structure 582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007475.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

atggaccaactgaagcaaatgcatgctcaaaccattaaaacaggtttcgcatcggacccggccgcgctcaacaggatcatagtcttctgttgtacccatgaatttggtgacatgaagtatgcacgccaggtgtttgatagaattcctgaaccaagtgttttcatttgtaacaccatgatcaaaggctatagtaggatacattgcccccgttatggggtatctatgtattcagcaatgcagaggatgggtgtgaagcccgattgctatacatttccgttcttgttgaggggattttctcctgagattgcgttggaatgggggagagggttccatgctcatgtgttgaagtatggtttcgattctaatgttttcgttcacaatgcattggtgcagatgtactcatgttgtggtcaagttgatacggcacgtgtggtttttgacatggtcagtgagaaggatgttgctacttggaatgcaatgatctctgggtacaataagatcaagaagttcgatgagtcctggaagcttttccatgacatggagaagaagggagtgtttcccacttctgttacccttgtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

193

Amino Acids

22.14

Weight (kDa)

8.65

Isoelectric Point (pI)

29.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025617)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0007475.1_g000005
rosa_samantha	Rh2BG378900 Rh2CG357800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	538
AccII	CGCG	1 cut(s)	65
AciI	CCGC	1 cut(s)	63
AclWI	GGATC	1 cut(s)	83
AcoI	YGGCCR	1 cut(s)	60
AcsI	RAATTY	2 cut(s)	101, 141
AcuI	CTGAAG	1 cut(s)	32
AcvI	CACGTG	1 cut(s)	428
AfaI	GTAC	3 cut(s)	94, 398, 491
AfiI	CCNNNNNNNGG	4 cut(s)	212, 213, 214, 538
AflIII	ACRYGT	1 cut(s)	427
AgsI	TTSAA	1 cut(s)	346
AjnI	CCWGG	2 cut(s)	126, 518
AluBI	AGCT	1 cut(s)	526
AluI	AGCT	1 cut(s)	526
AlwI	GGATC	1 cut(s)	83
AoxI	GGCC	1 cut(s)	60
ApoI	RAATTY	2 cut(s)	101, 141
Asp700I	GAANNNNTTC	1 cut(s)	527
AspLEI	GCGC	1 cut(s)	67
AspS9I	GGNCC	2 cut(s)	4, 55
AsuC2I	CCSGG	1 cut(s)	59
AsuHPI	GGTGA	1 cut(s)	119
AvaII	GGWCC	2 cut(s)	4, 55
BbrPI	CACGTG	1 cut(s)	428
BbsI	GAAGAC	1 cut(s)	76
BccI	CCATC	1 cut(s)	238
BceAI	ACGGC	1 cut(s)	438
BciT130I	CCWGG	2 cut(s)	128, 520
BciVI	GTATCC	1 cut(s)	189
BclI	TGATCA	1 cut(s)	177
BcnI	CCSGG	1 cut(s)	59
BfmI	CTRYAG	1 cut(s)	187
BfuI	GTATCC	1 cut(s)	189
BisI	GCNGC	1 cut(s)	63
BlsI	GCNGC	1 cut(s)	64
Bme1390I	CCNGG	3 cut(s)	59, 128, 520
Bme18I	GGWCC	2 cut(s)	4, 55
BmgT120I	GGNCC	2 cut(s)	4, 55
BmiI	GGNNCC	2 cut(s)	57, 329
BmrFI	CCNGG	3 cut(s)	59, 128, 520
BmsI	GCATC	1 cut(s)	59
BpiI	GAAGAC	1 cut(s)	76
BpuMI	CCSGG	1 cut(s)	59
BsaAI	YACGTR	1 cut(s)	428
Bsc4I	CCNNNNNNNGG	4 cut(s)	212, 213, 214, 538
Bse3DI	GCAATG	3 cut(s)	199, 240, 483
BseBI	CCWGG	2 cut(s)	128, 520
BseGI	GGATG	2 cut(s)	249, 463
BseLI	CCNNNNNNNGG	4 cut(s)	212, 213, 214, 538
BseMI	GCAATG	3 cut(s)	199, 240, 483
BseMII	CTCAG	1 cut(s)	291
BseX3I	CGGCCG	1 cut(s)	60
BsgI	GTGCAG	1 cut(s)	410
Bsh1236I	CGCG	1 cut(s)	65
Bsh1285I	CGRYCG	1 cut(s)	63
BshFI	GGCC	1 cut(s)	62
BsiEI	CGRYCG	1 cut(s)	63
BsiSI	CCGG	1 cut(s)	59
BslI	CCNNNNNNNGG	4 cut(s)	212, 213, 214, 538
BsmI	GAATGC	1 cut(s)	478
BsnI	GGCC	1 cut(s)	62
Bsp143I	GATC	4 cut(s)	75, 177, 480, 498
BspACI	CCGC	1 cut(s)	63
BspANI	GGCC	1 cut(s)	62
BspCNI	CTCAG	1 cut(s)	292
BspFNI	CGCG	1 cut(s)	65
BspLI	GGNNCC	2 cut(s)	57, 329
BspPI	GGATC	1 cut(s)	83
BsrDI	GCAATG	3 cut(s)	199, 240, 483
BssMI	GATC	4 cut(s)	75, 177, 480, 498
Bst2UI	CCWGG	2 cut(s)	128, 520
BstBAI	YACGTR	1 cut(s)	428
BstC8I	GCNNGC	2 cut(s)	24, 124
BstDEI	CTNAG	1 cut(s)	300
BstF5I	GGATG	2 cut(s)	249, 463
BstFNI	CGCG	1 cut(s)	65
BstHHI	GCGC	1 cut(s)	67
BstKTI	GATC	4 cut(s)	78, 180, 483, 501
BstMBI	GATC	4 cut(s)	75, 177, 480, 498
BstMCI	CGRYCG	1 cut(s)	63
BstNI	CCWGG	2 cut(s)	128, 520
BstNSI	RCATGY	1 cut(s)	26
BstSCI	CCNGG	3 cut(s)	57, 126, 518
BstSFI	CTRYAG	1 cut(s)	187
BstUI	CGCG	1 cut(s)	65
BstV2I	GAAGAC	1 cut(s)	76
BstXI	CCANNNNNNTGG	1 cut(s)	104
BstZI	CGGCCG	1 cut(s)	60
BsuI	GTATCC	1 cut(s)	189
BsuRI	GGCC	1 cut(s)	62
BtsCI	GGATG	2 cut(s)	249, 463
BtsIMutI	CAGTG	1 cut(s)	454
Cac8I	GCNNGC	2 cut(s)	24, 124
CfoI	GCGC	1 cut(s)	67
Cfr13I	GGNCC	2 cut(s)	4, 55
Csp6I	GTAC	3 cut(s)	93, 397, 490
CviJI	RGCY	4 cut(s)	62, 186, 256, 526
CviKI_1	RGCY	4 cut(s)	62, 186, 256, 526
CviQI	GTAC	3 cut(s)	93, 397, 490
DdeI	CTNAG	1 cut(s)	300
DpnI	GATC	4 cut(s)	77, 179, 482, 500
DpnII	GATC	4 cut(s)	75, 177, 480, 498
EaeI	YGGCCR	1 cut(s)	60
EagI	CGGCCG	1 cut(s)	60
EclXI	CGGCCG	1 cut(s)	60
Eco47I	GGWCC	2 cut(s)	4, 55
Eco52I	CGGCCG	1 cut(s)	60
Eco57I	CTGAAG	1 cut(s)	32
Eco72I	CACGTG	1 cut(s)	428
EcoRI	GAATTC	1 cut(s)	141
EcoRII	CCWGG	2 cut(s)	126, 518
EcoT22I	ATGCAT	2 cut(s)	24, 385
FbaI	TGATCA	1 cut(s)	177
Fnu4HI	GCNGC	1 cut(s)	63
FokI	GGATG	2 cut(s)	256, 470
Fsp4HI	GCNGC	1 cut(s)	63
GlaI	GCGC	1 cut(s)	66
GluI	GCNGC	1 cut(s)	63
HaeIII	GGCC	1 cut(s)	62
HapII	CCGG	1 cut(s)	59
HhaI	GCGC	1 cut(s)	67
Hin6I	GCGC	1 cut(s)	65
HinP1I	GCGC	1 cut(s)	65
HindIII	AAGCTT	1 cut(s)	524
HinfI	GANTC	2 cut(s)	359, 515
HpaII	CCGG	1 cut(s)	59
HphI	GGTGA	1 cut(s)	119
Hpy166II	GTNNAC	1 cut(s)	376
Hpy188I	TCNGA	2 cut(s)	55, 581
Hpy188III	TCNNGA	3 cut(s)	146, 299, 502
Hpy8I	GTNNAC	1 cut(s)	376
HpyAV	CCTTC	2 cut(s)	448, 541
HpyCH4IV	ACGT	1 cut(s)	427
HpyCH4V	TGCA	6 cut(s)	22, 122, 238, 383, 391, 476
HpyF3I	CTNAG	1 cut(s)	300
HpySE526I	ACGT	1 cut(s)	427
HspAI	GCGC	1 cut(s)	65
Ksp22I	TGATCA	1 cut(s)	177
Kzo9I	GATC	4 cut(s)	75, 177, 480, 498
LweI	GCATC	1 cut(s)	59
MaeII	ACGT	1 cut(s)	427
MaeIII	GTNAC	3 cut(s)	107, 167, 568
MalI	GATC	4 cut(s)	77, 179, 482, 500
MboI	GATC	4 cut(s)	75, 177, 480, 498
MboII	GAAGA	2 cut(s)	76, 556
MluCI	AATT	2 cut(s)	101, 141
MlyI	GAGTC	1 cut(s)	524
MmeI	TCCRAC	1 cut(s)	291
MnlI	CCTC	3 cut(s)	234, 279, 317
Mph1103I	ATGCAT	2 cut(s)	24, 385
MroXI	GAANNNNTTC	1 cut(s)	527
MseI	TTAA	1 cut(s)	36
MslI	CAYNNNNRTG	1 cut(s)	336
MspI	CCGG	1 cut(s)	59
MspR9I	CCNGG	3 cut(s)	59, 128, 520
Mva1269I	GAATGC	1 cut(s)	478
MvaI	CCWGG	2 cut(s)	128, 520
MvnI	CGCG	1 cut(s)	65
NciI	CCSGG	1 cut(s)	59
NdeII	GATC	4 cut(s)	75, 177, 480, 498
NlaIV	GGNNCC	2 cut(s)	57, 329
NmuCI	GTSAC	1 cut(s)	107
NsiI	ATGCAT	2 cut(s)	24, 385
NspI	RCATGY	1 cut(s)	26
PaeI	GCATGC	1 cut(s)	26
PctI	GAATGC	1 cut(s)	478
PdmI	GAANNNNTTC	1 cut(s)	527
PfeI	GAWTC	1 cut(s)	359
PflFI	GACNNNGTC	1 cut(s)	443
PflMI	CCANNNNNTGG	1 cut(s)	538
PfoI	TCCNGGA	1 cut(s)	518
PkrI	GCNGC	1 cut(s)	64
PleI	GAGTC	1 cut(s)	523
PmaCI	CACGTG	1 cut(s)	428
PmlI	CACGTG	1 cut(s)	428
PpsI	GAGTC	1 cut(s)	523
Ppu21I	YACGTR	1 cut(s)	428
Psp6I	CCWGG	2 cut(s)	126, 518
PspCI	CACGTG	1 cut(s)	428
PspGI	CCWGG	2 cut(s)	126, 518
PspN4I	GGNNCC	2 cut(s)	57, 329
PspPI	GGNCC	2 cut(s)	4, 55
PsyI	GACNNNGTC	1 cut(s)	443
RsaI	GTAC	3 cut(s)	94, 398, 491
RsaNI	GTAC	3 cut(s)	93, 397, 490
RseI	CAYNNNNRTG	1 cut(s)	336
SaqAI	TTAA	1 cut(s)	36
SatI	GCNGC	1 cut(s)	63
Sau3AI	GATC	4 cut(s)	75, 177, 480, 498
Sau96I	GGNCC	2 cut(s)	4, 55
SchI	GAGTC	1 cut(s)	524
ScrFI	CCNGG	3 cut(s)	59, 128, 520
SetI	ASST	4 cut(s)	46, 132, 430, 528
SfaNI	GCATC	1 cut(s)	59
SfcI	CTRYAG	1 cut(s)	187
SinI	GGWCC	2 cut(s)	4, 55
SmiMI	CAYNNNNRTG	1 cut(s)	336
SphI	GCATGC	1 cut(s)	26
Sse9I	AATT	2 cut(s)	101, 141
SsiI	CCGC	1 cut(s)	63
StyD4I	CCNGG	3 cut(s)	57, 126, 518
TaiI	ACGT	1 cut(s)	430
TaqI	TCGA	2 cut(s)	357, 510
TasI	AATT	2 cut(s)	101, 141
TatI	WGTACW	1 cut(s)	396
TauI	GCSGC	1 cut(s)	65
TfiI	GAWTC	1 cut(s)	359
Tru1I	TTAA	1 cut(s)	36
Tru9I	TTAA	1 cut(s)	36
TscAI	CASTG	1 cut(s)	454
TseFI	GTSAC	1 cut(s)	107
Tsp45I	GTSAC	1 cut(s)	107
TspDTI	ATGAA	3 cut(s)	114, 128, 151
TspGWI	ACGGA	1 cut(s)	264
TspRI	CASTG	1 cut(s)	454
Tth111I	GACNNNGTC	1 cut(s)	443
Van91I	CCANNNNNTGG	1 cut(s)	538
VpaK11BI	GGWCC	2 cut(s)	4, 55
XapI	RAATTY	2 cut(s)	101, 141
XceI	RCATGY	1 cut(s)	26
XmnI	GAANNNNTTC	1 cut(s)	527
Zsp2I	ATGCAT	2 cut(s)	24, 385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.